Literature DB >> 36066262

Genome Sequence of the Cluster CD Gordonia Phage Widow.

Ben Curtis1, Bayarjavkhlan Ganbaatar1, Griffin Lawrence1, Wyatt Oglesby1, Jaylee Rice1, Emelia Tremblay1, Melissa Maginnis1, Sally D Molloy1,2, Melody N Neely1.   

Abstract

Widow is a novel cluster CD bacteriophage isolated from a soil sample using the bacterial host Gordonia terrae. The Widow genome is 43,656 bp in length and encodes 64 protein-coding genes and no tRNAs. The genome shares 52 to 92% gene content with other cluster CD members.

Entities:  

Year:  2022        PMID： 36066262      PMCID： PMC9583811          DOI： 10.1128/mra.00695-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  16 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  Purification of nucleic acids by extraction with phenol:chloroform.

Authors:  Joseph Sambrook; David W Russell
Journal:  CSH Protoc       Date:  2006-06-01

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  PhagesDB: the actinobacteriophage database.

Authors:  Daniel A Russell; Graham F Hatfull
Journal:  Bioinformatics       Date:  2017-03-01       Impact factor: 6.937

7.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

8.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

10.  Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.

Authors:  Welkin H Pope; Charles A Bowman; Daniel A Russell; Deborah Jacobs-Sera; David J Asai; Steven G Cresawn; William R Jacobs; Roger W Hendrix; Jeffrey G Lawrence; Graham F Hatfull
Journal:  Elife       Date:  2015-04-28       Impact factor: 8.140
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