Literature DB >> 36066260

Complete Genome Sequence of Bacteriophage Loca, Isolated on a Microbacterium foliorum Culture.

Aurod Ounsinegad1, Megan Ashcraft1, Emily Bliss1, Dasire Brawley1, Grace Clements1, Austin Densmore1, Alexis Gastin1, Marisol Luciano1, Cole Moore1, Virginia Munoz1, Aryana Pernarelli1, Maci Pitner1, Esmae Velsen1, Kara Wiggam1, Marlee Goppert1, Dustin Edwards1.   

Abstract

Microbacteriophage Loca was extracted from a shopping cart handle swab sample in Stephenville, TX, and isolated on a Microbacterium foliorum NRRL-24224 culture. The 17,475-bp double-stranded DNA genome contains 25 predicted protein-coding genes and has >96% nucleotide identity to bacteriophages Quaker and Livingwater.

Entities:  

Year:  2022        PMID： 36066260      PMCID： PMC9584219          DOI： 10.1128/mra.00783-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  16 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  An improved method for the small scale preparation of bacteriophage DNA based on phage precipitation by zinc chloride.

Authors:  M A Santos
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

4.  Consed: a graphical editor for next-generation sequencing.

Authors:  David Gordon; Phil Green
Journal:  Bioinformatics       Date:  2013-08-31       Impact factor: 6.937

5.  A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.

Authors:  Lukas Zimmermann; Andrew Stephens; Seung-Zin Nam; David Rau; Jonas Kübler; Marko Lozajic; Felix Gabler; Johannes Söding; Andrei N Lupas; Vikram Alva
Journal:  J Mol Biol       Date:  2017-12-16       Impact factor: 5.469

6.  Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.

Authors:  Daniel A Russell
Journal:  Methods Mol Biol       Date:  2018

7.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

8.  Genomic diversity of bacteriophages infecting Microbacterium spp.

Authors:  Deborah Jacobs-Sera; Lawrence A Abad; Richard M Alvey; Kirk R Anders; Haley G Aull; Suparna S Bhalla; Lawrence S Blumer; David W Bollivar; J Alfred Bonilla; Kristen A Butela; Roy J Coomans; Steven G Cresawn; Tom D'Elia; Arturo Diaz; Ashley M Divens; Nicholas P Edgington; Gregory D Frederick; Maria D Gainey; Rebecca A Garlena; Kenneth W Grant; Susan M R Gurney; Heather L Hendrickson; Lee E Hughes; Margaret A Kenna; Karen K Klyczek; Hari Kotturi; Travis N Mavrich; Angela L McKinney; Evan C Merkhofer; Jordan Moberg Parker; Sally D Molloy; Denise L Monti; Dana A Pape-Zambito; Richard S Pollenz; Welkin H Pope; Nathan S Reyna; Claire A Rinehart; Daniel A Russell; Christopher D Shaffer; Viknesh Sivanathan; Ty H Stoner; Joseph Stukey; C Nicole Sunnen; Sara S Tolsma; Philippos K Tsourkas; Jamie R Wallen; Vassie C Ware; Marcie H Warner; Jacqueline M Washington; Kristi M Westover; JoAnn L Whitefleet-Smith; Helen I Wiersma-Koch; Daniel C Williams; Kira M Zack; Graham F Hatfull
Journal:  PLoS One       Date:  2020-06-18       Impact factor: 3.240

9.  Complete Genome Sequence of Bacteriophage Fizzles, Isolated from Microbacterium foliorum.

Authors:  Skyler Adams; Gabrielle Spotz; Riley Babcock; Chloe Butler; Samantha Conger; Madison Crew; Stephanie Garcia; Joanna Gonzalez; Jocelyn Hodges; Alondra Martinez; Samuel Munoz; Chloe O'Grady; Abigail Quirl; Kristin Sefcik; Tanner Taylor; Gustavo Vazquez; Faith Cox; Dustin Edwards
Journal:  Microbiol Resour Announc       Date:  2022-01-06

10.  Complete Genome Sequence of Bacteriophage Finny, Isolated from a Microbacterium foliorum Culture.

Authors:  Tiffany Lee; Michaela Aguirre; Shey Andrews; Kayla Bahr; Abigail Ballard; Matthew Bristerpostma; Faith Cox; Leah Dowell; David Kiker; Tiffany Lujan; Stacy Luka; Abbigal Ramirez; Rheaven Sandoval; Kenneth Underhill; Haze Murphy; Cecilia Cabrera; Dustin Edwards
Journal:  Microbiol Resour Announc       Date:  2019-10-03
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