| Literature DB >> 36052262 |
Meilin Jiang1, Pei Yang2,3, Jing Li4, Wenying Peng5, Xingxiang Pu1, Bolin Chen1, Jia Li1, Jingyi Wang1, Lin Wu1.
Abstract
Background: Biomarkers that predict the efficacy of first-line tyrosine kinase inhibitors (TKIs) are pivotal in epidermal growth factor receptor (EGFR) mutant advanced lung adenocarcinoma. Imaging-based biomarkers have attracted much attention in anticancer therapy. This study aims to use the machine learning method to distinguish EGFR mutation status and further explores the predictive role of EGFR mutation-related radiomics features in response to first-line TKIs.Entities:
Keywords: computed tomography; epidermal growth factor receptor mutation status; lung adenocarcinoma; machine learning; radiomic response biomarker
Year: 2022 PMID: 36052262 PMCID: PMC9424619 DOI: 10.3389/fonc.2022.985284
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Images show study processing of radiomics. Computed tomography (CT) data were retrospectively collected. Region of interest was manually segmented in axial view by a clinical doctor using imaging biomarker explorer software. Eight categories of radiomics features were extracted from region of interest (ROI) in CT images and next, the top 13 features to train support vector machine classifier and validate it on independent set (n = 178). Experiment 1 is for developing radiomics signature for epidermal growth factor receptor (EGFR) mutational status in lung adenocarcinoma. Experiment 2 is for analyzing the relationship between progression-free survival and the top 13 features.
Clinical characteristics of all patients included in the study.
| Factors | Training cohort |
| Validation cohort |
| ||
|---|---|---|---|---|---|---|
| EGFR-wild | EGFR-mutant | EGFR-wild | EGFR-mutant | |||
| Subject ( | 514 | 178 | ||||
| Age (years) | 57 ± 9 | 55 ± 4 | <0.001 | 57 ± 11 | 59 ± 9 | <0.001 |
| Gender | <0.001 | <0.001 | ||||
| Male | 171 | 136 | 76 | 40 | ||
| Female | 78 | 129 | 12 | 50 | ||
| Smoking history | <0.001 | <0.001 | ||||
| Yes | 158 | 95 | 67 | 29 | ||
| No | 91 | 170 | 21 | 61 | ||
| Family history | 0.417 | 0.565 | ||||
| Yes | 31 | 26 | 11 | 15 | ||
| No | 218 | 239 | 77 | 75 | ||
| TNM stage | 0.717 | 0.076 | ||||
| I | 2 | 2 | 0 | 1 | ||
| II | 5 | 3 | 2 | 0 | ||
| III | 42 | 38 | 11 | 4 | ||
| IV | 200 | 222 | 75 | 85 | ||
| Tumor position | 0.853 | 0.116 | ||||
| RUL | 81 | 87 | 18 | 27 | ||
| RML | 20 | 27 | 12 | 16 | ||
| RLL | 45 | 52 | 14 | 16 | ||
| LUL | 66 | 63 | 17 | 18 | ||
| LLL | 37 | 36 | 27 | 13 | ||
| EGFR mutation type | 0 | 265 | 0 | 90 | ||
| Wild type | 249 | 0 | 88 | 0 | ||
| Exon 19 deletion | 0 | 167 | 0 | 58 | ||
| Exon 21 insertion | 0 | 89 | 0 | 31 | ||
| Other types | 0 | 9 | 0 | 1 | ||
EGFR, epidermal growth factor receptor; RUL, right upper lung; RML, right middle lung; RLL, right lower lung; LUL, left upper lung; LLL, left lower lung.
Based on American Joint Committee on Cancer (AJCC) 8th edition.
Only statistically significant (p < 0.05) results are reported for analysis.
Clinical characteristics of patients included in treatment response analysis.
| Factors | Training cohort | Validation cohort |
|
|---|---|---|---|
| N (%) | N (%) | ||
| Subject( | 187 (100) | 38 (100) | |
| Age(years) | 0.114 | ||
| Median | 55 | 57 | |
| Range | 29–80 | 37–75 | |
| Gender | 0.707 | ||
| Male | 80 (42.8) | 15 (39.5) | |
| Female | 107 (57.2) | 23 (60.5) | |
| Smoking history | 0.894 | ||
| Yes | 57 (30.5) | 12 (31.6) | |
| No | 130 (69.5) | 26 (68.4) | |
| Family history | 0.469 | ||
| Yes | 19 (10.2) | 6 (15.8) | |
| No | 168 (89.8) | 32 (84.2) | |
| TNM stage | 0.083 | ||
| III | 19 (10.2) | 0 (0) | |
| IV | 168 (89.8) | 38 (100) | |
| Tumor position | 0.466 | ||
| RUL | 57 (30.5) | 9 (23.7) | |
| RML | 17 (9.1) | 9 (23.7) | |
| RLL | 33 (17.7) | 9 (23.7) | |
| LUL | 53 (28.3) | 7 (18.4) | |
| LLL | 27 (14.4) | 4 (10.5) | |
| EGFR-TKI therapy | 0.718 | ||
| Gefitinib | 66 | 13 | |
| Erlotinib | 62 | 15 | |
| Icotinib | 59 | 10 | |
| Median PFS (months) | 12 | 11.8 | 0.304 |
PFS, progression-free survival; RUL, right upper lung; RML, right middle lung; RLL, right lower lung; LUL, left upper lung; LLL, left lower lung; EGFR, epidermal growth factor receptor; TKI, tyrosine kinase inhibitor.
Based on American Joint Committee on Cancer (AJCC) 8th edition.
Figure 2The performance of epidermal growth factor receptor (EGFR) status-related radiomics signature was evaluated by the area under the curve (AUC) of the receiver operating characteristic (ROC) curve.
Figure 3Analysis of epidermal growth factor receptor (EGFR) mutation-associated features from computed tomography (CT) imaging before treatment and the best clinical response to tyrosine kinase inhibitor (TKI) first-line therapy. All patients were divided into two groups according to the cutoff of skewness and 10th percentile.
Figure 4Kaplan–Maier survival curves of progression-free survival under biomarker-defined subgroups. In the tyrosine kinase inhibitor (TKI) therapy training cohort, (A) stratification by the skewness of first-order category (low ≤ 0.882 versus high > 0.882); (B) stratification by the 10th percentile of first-order category (low ≤ 21.132 versus high > 21.132). In the TKI therapy validation cohort, (C) stratification by the skewness of first-order category (low ≤ 0.882 versus high > 0.882). p-Values are calculated with multivariate Cox models adjusted by age, gender, smoking history, family history, TNM stage, and tumor position.
Multivariate analysis of the categorization of two features and PFS.
| Factors | Categorization | Training cohort ( | Validation cohort ( | ||
|---|---|---|---|---|---|
| HR (95% CI) |
| HR (95% CI) |
| ||
| Age | Continuous | 0.992 (0.976–1.009) | 0.368 | 1.015 (0.976–1.055) | 0.461 |
| Gender | Female | 1.181 (0.751–1.856) | 0.471 | 0.719 (0.154–3.360) | 0.675 |
| Smoking history | No | 0.994 (0.609–1.621) | 0.98 | 0.822 (0.180–3.744) | 0.8 |
| Family history | No | 1.246 (0.764–2.031) | 0.378 | 1.019 (0.357–2.907) | 0.972 |
| TNM stage | III | 0.854 (0.517–1.413) | 0.54 | 0 | 0 |
| Tumor position | RUL | 0.980 (0.887–1.083) | 0.695 | 0.879 (0.671–1.153) | 0.352 |
| Skewness | ≤Cutoff1 | 1.722 (1.261–2.352) | 0.001 | 3.343 (1.337–8.361) | 0.01 |
| Age | Male | 0.995 (0.979–1.012) | 0.579 | 0.998 (0.961–1.036) | 0.905 |
| Gender | Continuous | 1.154 (0.740–1.800) | 0.528 | 1.694 (0.425–6.748) | 0.455 |
| Smoking history | 0 or 1 | 0.870 (0.534–1.416) | 0.575 | 0.437 (0.109–1.751) | 0.243 |
| Family history | No | 1.128 (0.694–1.833) | 0.628 | 0.638 (0.237–1.718) | 0.374 |
| TNM stage | First | 0.682 (0.418–1.111) | 0.124 | 0 | 0 |
| Tumor position | RUL | 0.996 (0.902–1.101) | 0.943 | 1.013 (0.798–1.285) | 0.919 |
| 10th percentile | ≤Cutoff2 | 1.466 (1.085–1.981) | 0.013 | 1.122 (0.492–2.561) | 0.784 |
PFS, progression-free survival; EGFR, epidermal growth factor receptor; TKI, tyrosine kinase inhibitor; RUL, right upper lung; RML, right middle lung; RLL, right lower lung; LUL, left upper lung; LLL, left lower lung; HR, hazard ratio; CI, confidence interval.
Based on American Joint Committee on Cancer (AJCC) 8th edition.
Only statistically significant (p < 0.05) results are reported for analysis.
Cutoff1 = 0.882; Cutoff2 = 21.132.