Literature DB >> 36050568

J-aggregation of 5, 10, 15, 20-tetraphenyl-21H, 23H-porphinetetrasulfonic acid in a molecular crowding environment simulated using dextran.

Akihisa Miyagawa1, Kiyoharu Nakatani2.   

Abstract

In a molecular crowding environment, different thermodynamics is often observed in a dilute solution. One such example is the promotion of the formation of amyloids, which are causal agents of Alzheimer's disease. Although a considerable number of molecular crowding studies have been reported, its effect remains unclear. In this study, we investigated a J-aggregation of a porphyrin derivative, 5, 10, 15, 20-tetraphenyl-21H,23H-porphinetetrasulfonic acid (TPPS), in a molecular crowding environment simulated by dextran (Dex) in HClO4, HCl, and NaCl solutions. The changes in the number of monomers in the J-aggregate (n) with the concentration of Dex (CDex) depended on the type of solution. No change in n was observed in the NaCl solution, which indicated that the Dex solution did not affect the J-aggregation because of the ionic strength effect. In the HCl solution, the aggregation behavior changed with the pH. Further, at a low pH, the electrostatic interactions promoted J-aggregation by the volume exclusion of Dex, while the aggregation was suppressed at a high pH owing to steric hindrance. A different aggregation mechanism, involving the hydrogen bonding between NH in the center of the TPPS macrocyclic frame and the SO3H and ClO4- functional groups, was responsible for the J-aggregation in the HClO4 solution. Moreover, the n value increased owing to the volume exclusion effect. We expect that this study will be useful for further elucidation of the molecular crowding effect.
© 2022. The Author(s), under exclusive licence to The Japan Society for Analytical Chemistry.

Entities:  

Keywords:  Dextran; J-aggregation; Molecular crowding

Year:  2022        PMID: 36050568     DOI: 10.1007/s44211-022-00185-5

Source DB:  PubMed          Journal:  Anal Sci        ISSN: 0910-6340            Impact factor:   1.967


  34 in total

Review 1.  Macromolecular crowding: obvious but underappreciated.

Authors:  R J Ellis
Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

Review 2.  Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges.

Authors:  Damien Hall; Allen P Minton
Journal:  Biochim Biophys Acta       Date:  2003-07-30

3.  Protein aggregation in crowded environments.

Authors:  Duncan A White; Alexander K Buell; Tuomas P J Knowles; Mark E Welland; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

Review 4.  Biochemical effects of molecular crowding.

Authors:  N A Chebotareva; B I Kurganov; N B Livanova
Journal:  Biochemistry (Mosc)       Date:  2004-11       Impact factor: 2.487

5.  Mixed macromolecular crowding inhibits amyloid formation of hen egg white lysozyme.

Authors:  Bing-Rui Zhou; Zheng Zhou; Qing-Lian Hu; Jie Chen; Yi Liang
Journal:  Biochim Biophys Acta       Date:  2008-01-18

Review 6.  Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

Authors:  Shu-ichi Nakano; Daisuke Miyoshi; Naoki Sugimoto
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

Review 7.  Crowding effects on diffusion in solutions and cells.

Authors:  James A Dix; A S Verkman
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Compaction and self-association of megabase-sized chromatin are induced by anionic protein crowding.

Authors:  Anatoly Zinchenko; Qinming Chen; Nikolay V Berezhnoy; Sai Wang; Lars Nordenskiöld
Journal:  Soft Matter       Date:  2020-05-13       Impact factor: 3.679

9.  Effects of macromolecular crowding on genetic networks.

Authors:  Marco J Morelli; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

Review 10.  Modeling Crowded Environment in Molecular Simulations.

Authors:  Natalia Ostrowska; Michael Feig; Joanna Trylska
Journal:  Front Mol Biosci       Date:  2019-09-11
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