Literature DB >> 36043870

Near-Complete Whole-Genome Sequencing of Two Burkholderia pseudomallei Strains Harbouring Novel Molecular Class D Beta-Lactamase Genes, Isolated from Malaysia.

Ummu Afeera Zainulabid1,2, Norirwanisyam Mohamad Zain3,4, Janaki Arumugam5, Norhidayah Kamarudin1, Muhammad 'Adil Zainal Abidin1, Abdullah Shamshir Abd Mokti5, Noorlina Nordin5, Ahmad Faizal Rakawi5, Aman Shah Abdul Majid4, Gnanasekaran Ashok4, Alex Lourdes Francis4, Darren Dean Tay2, Natesan Vijayalakshami4, How Soon Hin1, Hajar Fauzan Ahmad2.   

Abstract

Here, we present two 7.1- and 7.3-bp near-complete genome sequences of Burkholderia pseudomallei strains of HTAA077 and HRPB058, isolated from a pus culture from a confirmed melioidosis patient at Hospital Tengku Ampuan Afzan, Kuantan, Malaysia, and from blood culture from a patient at Hospital Raja Permaisuri Bainun, Ipoh, Malaysia, using a Nanopore MinION instrument.

Entities:  

Year:  2022        PMID： 36043870      PMCID： PMC9583775          DOI： 10.1128/mra.00468-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  10 in total

1.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors:  Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

2.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

3.  Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

Authors:  Ea Zankari; Henrik Hasman; Rolf Sommer Kaas; Anne Mette Seyfarth; Yvonne Agersø; Ole Lund; Mette Voldby Larsen; Frank M Aarestrup
Journal:  J Antimicrob Chemother       Date:  2012-12-11       Impact factor: 5.790

4.  Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences.

Authors:  Kortine Annina Kleinheinz; Katrine Grimstrup Joensen; Mette Voldby Larsen
Journal:  Bacteriophage       Date:  2014-01-22

5.  Melioidosis: clinical aspects.

Authors:  Panduka Karunanayake
Journal:  Clin Med (Lond)       Date:  2022-01       Impact factor: 2.659

6.  Fast and accurate de novo genome assembly from long uncorrected reads.

Authors:  Robert Vaser; Ivan Sović; Niranjan Nagarajan; Mile Šikić
Journal:  Genome Res       Date:  2017-01-18       Impact factor: 9.043

7.  Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.

Authors:  Alexandre Lomsadze; Karl Gemayel; Shiyuyun Tang; Mark Borodovsky
Journal:  Genome Res       Date:  2018-05-17       Impact factor: 9.438

8.  Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane.

Authors:  Hajar Fauzan Ahmad; Lars Schreiber; Ian P G Marshall; Philip Junker Andersen; Josué Leonardo Castro-Mejía; Dennis Sandris Nielsen
Journal:  Microbiol Resour Announc       Date:  2019-06-13

9.  Epidemiological and Clinical Characteristics of Melioidosis Caused by Gentamicin-Susceptible Burkholderia pseudomallei in Sarawak, Malaysia.

Authors:  Tonnii L L Sia; Anand Mohan; Mong-How Ooi; Su-Lin Chien; Lee-See Tan; Charles Goh; Daniel C L Pang; Bart J Currie; Jin-Shyan Wong; Yuwana Podin
Journal:  Open Forum Infect Dis       Date:  2021-09-03       Impact factor: 3.835

10.  The Epidemiology of Melioidosis and Its Association with Diabetes Mellitus: A Systematic Review and Meta-Analysis.

Authors:  Sukanta Chowdhury; Lovely Barai; Samira Rahat Afroze; Probir Kumar Ghosh; Farhana Afroz; Habibur Rahman; Sumon Ghosh; Muhammad Belal Hossain; Mohammed Ziaur Rahman; Pritimoy Das; Muhammad Abdur Rahim
Journal:  Pathogens       Date:  2022-01-25
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.