Literature DB >> 36043289

Neural operator learning of heterogeneous mechanobiological insults contributing to aortic aneurysms.

Somdatta Goswami1, David S Li2, Bruno V Rego2, Marcos Latorre3, Jay D Humphrey2, George Em Karniadakis1,4.   

Abstract

Thoracic aortic aneurysm (TAA) is a localized dilatation of the aorta that can lead to life-threatening dissection or rupture. In vivo assessments of TAA progression are largely limited to measurements of aneurysm size and growth rate. There is promise, however, that computational modelling of the evolving biomechanics of the aorta could predict future geometry and properties from initiating mechanobiological insults. We present an integrated framework to train a deep operator network (DeepONet)-based surrogate model to identify TAA contributing factors using synthetic finite-element-based datasets. For training, we employ a constrained mixture model of aortic growth and remodelling to generate maps of local aortic dilatation and distensibility for multiple TAA risk factors. We evaluate the performance of the surrogate model for insult distributions varying from fusiform (analytically defined) to complex (randomly generated). We propose two frameworks, one trained on sparse information and one on full-field greyscale images, to gain insight into a preferred neural operator-based approach. We show that this continuous learning approach can predict the patient-specific insult profile associated with any given dilatation and distensibility map with high accuracy, particularly when based on full-field images. Our findings demonstrate the feasibility of applying DeepONet to support transfer learning of patient-specific inputs to predict TAA progression.

Entities:  

Keywords:  deep learning; growth and remodelling; operator-based neural network; thoracic aortic aneurysm

Mesh:

Year:  2022        PMID: 36043289      PMCID: PMC9428523          DOI: 10.1098/rsif.2022.0410

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.293


  37 in total

1.  Differential ascending and descending aortic mechanics parallel aneurysmal propensity in a mouse model of Marfan syndrome.

Authors:  C Bellini; A Korneva; L Zilberberg; F Ramirez; D B Rifkin; J D Humphrey
Journal:  J Biomech       Date:  2015-12-22       Impact factor: 2.712

Review 2.  Therapeutics Targeting Drivers of Thoracic Aortic Aneurysms and Acute Aortic Dissections: Insights from Predisposing Genes and Mouse Models.

Authors:  Dianna M Milewicz; Siddharth K Prakash; Francesco Ramirez
Journal:  Annu Rev Med       Date:  2017-01-14       Impact factor: 13.739

Review 3.  Marfan syndrome; A connective tissue disease at the crossroads of mechanotransduction, TGFβ signaling and cell stemness.

Authors:  Francesco Ramirez; Cristina Caescu; Elisabeth Wondimu; Josephine Galatioto
Journal:  Matrix Biol       Date:  2017-08-04       Impact factor: 11.583

Review 4.  Therapies for Thoracic Aortic Aneurysms and Acute Aortic Dissections.

Authors:  Dianna M Milewicz; Francesco Ramirez
Journal:  Arterioscler Thromb Vasc Biol       Date:  2019-02       Impact factor: 8.311

5.  A machine learning approach to investigate the relationship between shape features and numerically predicted risk of ascending aortic aneurysm.

Authors:  Liang Liang; Minliang Liu; Caitlin Martin; John A Elefteriades; Wei Sun
Journal:  Biomech Model Mechanobiol       Date:  2017-04-06

6.  A machine learning approach for predicting complications in descending and thoracoabdominal aortic aneurysms.

Authors:  Nicolai P Ostberg; Mohammad A Zafar; Sandip K Mukherjee; Bulat A Ziganshin; John A Elefteriades
Journal:  J Thorac Cardiovasc Surg       Date:  2022-01-11       Impact factor: 5.209

7.  Simulating progressive intramural damage leading to aortic dissection using DeepONet: an operator-regression neural network.

Authors:  Minglang Yin; Ehsan Ban; Bruno V Rego; Enrui Zhang; Cristina Cavinato; Jay D Humphrey; George Em Karniadakis
Journal:  J R Soc Interface       Date:  2022-02-09       Impact factor: 4.118

8.  Prediction of Distal Aortic Enlargement after Proximal Repair of Aortic Dissection Using Machine Learning.

Authors:  Min Zhou; Zhenyu Shi; Xu Li; Liang Cai; Yong Ding; Yi Si; Hongwen Deng; Weiguo Fu
Journal:  Ann Vasc Surg       Date:  2021-04-03       Impact factor: 1.466

9.  Numerical knockouts-In silico assessment of factors predisposing to thoracic aortic aneurysms.

Authors:  M Latorre; J D Humphrey
Journal:  PLoS Comput Biol       Date:  2020-10-20       Impact factor: 4.475

10.  Deep learning enables genetic analysis of the human thoracic aorta.

Authors:  James P Pirruccello; Mark D Chaffin; Elizabeth L Chou; Stephen J Fleming; Honghuang Lin; Mahan Nekoui; Shaan Khurshid; Samuel F Friedman; Alexander G Bick; Alessandro Arduini; Lu-Chen Weng; Seung Hoan Choi; Amer-Denis Akkad; Puneet Batra; Nathan R Tucker; Amelia W Hall; Carolina Roselli; Emelia J Benjamin; Shamsudheen K Vellarikkal; Rajat M Gupta; Christian M Stegmann; Dejan Juric; James R Stone; Ramachandran S Vasan; Jennifer E Ho; Udo Hoffmann; Steven A Lubitz; Anthony A Philippakis; Mark E Lindsay; Patrick T Ellinor
Journal:  Nat Genet       Date:  2021-11-26       Impact factor: 41.307

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