| Literature DB >> 36039146 |
Benjamin I Perry1,2, Frederik Vandenberghe3, Nathalia Garrido-Torres4, Emanuele F Osimo1,2,5, Marianna Piras3, Javier Vazquez-Bourgon4,6, Rachel Upthegrove7,8, Claire Grosu3, Victor Ortiz-Garcia De La Foz6, Peter B Jones1,2, Nermine Laaboub3, Miguel Ruiz-Veguilla4, Jan Stochl1, Celine Dubath3, Manuel Canal-Rivero4, Pavan Mallikarjun7, Aurélie Reymond-Delacrétaz3, Nicolas Ansermot3, Emilio Fernandez-Egea1,2, Severine Crettol3, Franziska Gamma9, Kerstin J Plessen10, Philippe Conus11, Golam M Khandaker1,12,13, Graham K Murray1,2, Chin B Eap3,14,15,16, Benedicto Crespo-Facorro4.
Abstract
Background: Cardiometabolic dysfunction is common in young people with psychosis. Recently, the Psychosis Metabolic Risk Calculator (PsyMetRiC) was developed and externally validated in the UK, predicting up-to six-year risk of metabolic syndrome (MetS) from routinely collected data. The full-model includes age, sex, ethnicity, body-mass index, smoking status, prescription of metabolically-active antipsychotic medication, high-density lipoprotein, and triglyceride concentrations; the partial-model excludes biochemical predictors.Entities:
Keywords: Early Intervention; International Validation; Metabolic Syndrome; PAFIP; PsyMetab; Psychosis; Risk Prediction Algorithm
Year: 2022 PMID: 36039146 PMCID: PMC9418905 DOI: 10.1016/j.lanepe.2022.100493
Source DB: PubMed Journal: Lancet Reg Health Eur ISSN: 2666-7762
Original PsyMetRiC Algorithm Coefficients After Shrinkage for Optimism.
| PsyMetRiC Predictor | Full-Model | Partial-Model |
|---|---|---|
| Intercept | −6.439813 | −6.973829 |
| Age in years (continuous) | 0.006233226 | 0.00633115 |
| Black/African-Caribbean Ethnicity (yes/no) | 0.004258861 | 0.07548129 |
| Asian / Other Ethnicity (yes/no) | 0.211217746 | 0.29285950 |
| Male Sex (yes/no) | 0.222300765 | 0.31460036 |
| Body Mass Index (BMI) (kg/m2) (continuous) | 0.141186241 | 0.16912161 |
| Current Smoking Status (smoker, non-smoker) | 0.153691193 | 0.24751854 |
| Prescribed a Metabolically-Active Antipsychotic | 0.497552758 | 0.60013558 |
| High-Density Lipoprotein (HDL) (mmol/L) (continuous) | −0.399013329 | |
| Triglycerides (mmol/L) (continuous) | 0.343528440 |
See Supplementary Table 4.
Predictor not included in model.
Sociodemographic characteristics of the original psymetric development sample and included external validation samples.
| Characteristic | Original PsyMetRiC Development Sample (UK) | PsyMetab External Validation Sample (Switzerland) | PAFIP External Validation Sample (Spain) | Between-Group Differences |
|---|---|---|---|---|
| Sample before Inclusion/Exclusion Criteria Applied | 1504 | 2852 | 885 | - |
| Included sample size | 651 (43.28) | 558 (19.57) | 466 (52.66) | - |
| Age in Years, mean (SD) | 24.52 (4.91) | 25·92 (5.32) | 25·51 (4.99) | F=12.22, |
| White European/NR Ethnicity, | 360 (55.3) | 446 (79.93) | 435 (93.34) | χ=219.67, |
| Black/African-Caribbean Ethnicity, | 109 (16.74) | 68 (12.19) | 15 (3.22) | χ=49.38, |
| Asian/Other Ethnicity, | 181 (27.80) | 44 (7.48) | 16 (3.43) | χ=159.67, |
| Male Sex, | 440 (67.59) | 345 (61.83) | 303 (65.16) | χ=4.38, |
| HDL at baseline, mmol/L, mean (SD) | 1.88 (0.57) | 1.33 (0.36) | 1.32 (0.34) | F=303.57, |
| Triglycerides at baseline, mmol/L, mean (SD) | 1.39 (1.06) | 1.16 (0.70) | 0.88 (0.40) | F=54.89, |
| BMI at baseline, kg/m2, mean (SD) | 23.63 (5.43) | 23.60 (5.00) | 22.50 (3.36) | F=9.14, |
| FPG at baseline (mmol/L), mean (SD) | 5.19 (1.28) | 4.95 (0.82) | 4.69 (0.55) | F=36.11, |
| Systolic BP at baseline (mmHg), mean (SD) | 120.65 (11.68) | 121.32 (14.00) | 119.86 (14.10) | F=1.56, |
| Prescribed a More-Metabolically-Active Antipsychotic | 455 (69.89) | 413 (74.01) | 234 (50.21) | χ=71.87, |
| Smoking at baseline, | 315 (48.39) | 362 (64.87) | 279 (59.90) | χ=35.40, |
| Follow-up time, years, mean (SD) | 1.86 (1.32) | 2.48 (1.40) | 2.59 (0.73) | F=61.47, |
| Antipsychotic Naïve at baseline, | NR | 361 (64.70) | 433 (92.92) | χ=114.53, |
| Metabolic Syndrome at baseline, | 49 (6.58) | 36 (6.06) | 31 (6.24) | χ=0.53, |
| Metabolic Syndrome at Follow-up, | 109 (16.74) | 103 (18.54) | 66 (14.16) | χ=3.40, |
HDL=high-density lipoprotein; BMI=body mass index; FPG=fasting plasma glucose; BP=blood pressure; NR=Not recorded; d.f.=degrees of freedom.
See Supplementary Figure 1 for a flow-chart of included participants in the study.
Definitions of Metabolically-active antipsychotics are listed in Supplementary Table 1.
Corresponds to percentage of sample before those participants were excluded.
Analysis of means was conducted using one-way ANOVA. Analysis of proportions was conducted using the chi-square equality of proportions test.
Predictive performance statistics of the PsyMetRiC full- and partial models before and after logistic calibration in PsyMetab and PAFIP.
| Measure of Predictive Performance | Primary Analysis, Estimate (95% C.I.) | After Logistic Calibration, Estimate (95% C.I.) | ||
|---|---|---|---|---|
| Full-Model | Partial-Model | Full-Model | Partial-Model | |
| C-Statistic | 0.73 (0.68, 0.79) | 0.68 (0.62, 0.74) | 0.73 (0.68, 0.79) | 0.68 (0.62, 0.74) |
| r2 | 0.10 (0.06, 0.14) | 0.08 (0.03, 0.13) | 0.12 (0.09, 0,15) | 0.08 (0.04, 0.12) |
| Calibration Intercept | 0.11 (−0.05, 0.26) | 0.12 (0.05, 0.19) | −0.01 (−0.01, −0.01) | −0.01 (−0.01, −0.01) |
| Calibration Slope | 0.77 (0.72, 0.82) | 0.93 (0.86, 1.00) | 1.02 (1.01, 1.04) | 1.03 (1.01, 1.05) |
| Brier Score | 0.13 (0.09, 0.17) | 0.14 (0.08, 0.20) | 0.13 (0.08, 0.16) | 0.14 (0.10, 0.18) |
| C-Statistic | 0.72 (0.66, 0.78) | 0.66 (0.60, 0.71) | 0.72 (0.66, 0.78) | 0.66 (0.60, 0.71) |
| r2 | 0.10 (0.05, 0.15) | 0.05 (0.02, 0.08) | 0.10 (0.05, 0.15) | 0.05 (0.02, 0.08) |
| Calibration Intercept | 0.24 (0.09, 0.38) | −0.30 (−0.38, −0.22) | 0.01 (0.00, 0.01) | 0.01 (0.00, 0.01) |
| Calibration Slope | 1.09 (0.99, 1.20) | 0.91 (0.80, 1.02) | 1.03 (1.01, 1.05) | 1.04 (1.01, 1.06) |
| Brier Score | 0.13 (0.08, 0.16) | 0.12 (0.09, 0.16) | 0.11 (0.07, 0.16) | 0.12 (0.09, 0.16) |
The C-statistic is a measure of discrimination and estimates the probability that a randomly selected ‘case’ will have a higher predicted probability than a randomly selected non-case. Scores of 1.0 indicate perfect discrimination; scores of >0.70 are generally considered acceptable. The calibration intercept (ideally close to 0) and calibration slope (ideally close to 1) are estimates of model calibration (i.e., the agreement between the observed proportion and predicted risk). The Brier score (ideally close to 0, with scores >0.25 indicating poor performance) is an overall measure of algorithm performance. For comparison, results from the original PsyMetRiC external validation in the UK were: full-model: C=0.75 (95% C.I., 0.69–0.80; r2=0.21 (95% CI., 0.18–0.25); Brier score=0.07 (95% C.I., 0.04–0.10); intercept=-0.05 (95% C.I., −0.08, −0.02); partial-model: C=0.74 (95% C.I., 0.67–0.79); r2=0.17 (95% C.I., 0.14–0.20); Brier score=0.08 (95% C.I., 0.05–0.11); intercept=-0.07 (95% C.I., −0.11, −0.03). See the original PsyMetRiC manuscript for further details.
Figure 1Calibration Plots of PsyMetRiC in PsyMetab (Switzerland). A = Primary Analysis - Full Model; B = After Logistic Calibration – Full Model; C = Primary Analysis – Partial Model; D = After Logistic Calibration – Partial Model.
Calibration plots illustrate agreement between the observed (y axis) and predicted risk (x axis). Perfect agreement would trace the red line. Algorithm calibration is illustrated by the black line. Triangles denote grouped observations for participants at deciles of predicted risk, with 95% C.I.’s indicated by the vertical black lines.
aLogistic calibration takes into account differences in baseline risk that may exist between populations by re-estimating the intercept term, and also re-estimates the slope term thus assuming similar relative effects of the predictors but allowing for a larger or smaller absolute effect of the predictors. See Methods. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Figure 2Calibration Plots of PsyMetRiC in PAFIP (Spain). A = Primary Analysis - Full Model; B = After Logistic Calibration – Full Model; C = Primary Analysis – Partial Model; D = After Logistic Calibration – Partial Model.
Calibration plots illustrate agreement between the observed (y axis) and predicted risk (x axis). Perfect agreement would trace the red line. Algorithm calibration is illustrated by the black line. Triangles denote grouped observations for participants at deciles of predicted risk, with 95% C.I.’s indicated by the vertical black lines.
aLogistic calibration takes into account differences in baseline risk that may exist between populations by re-estimating the intercept term, and also re-estimates the slope term thus assuming similar relative effects of the predictors but allowing for a larger or smaller absolute effect of the predictors. See Methods. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Figure 3Clinical Usefulness of PsyMetRiC in The PsyMetab and PAFIP Samples Before and After Logistic Calibration. A = Full-Model – PsyMetab (Switzerland); B = Full-Model – PAFIP (Spain); C = Partial-Model – PsyMetab (Switzerland); D = Partial-Model – PAFIP (Spain).
The plot reports net benefit (y axis) of PsyMetRiC Full- and Partial-Models (blue dotted line = original PsyMetRiC algorithm applied to the sample; red solid line = recalibrated site-specific version) across a range of risk thresholds (x axis) compared with intervening in all (grey solid line) or intervening in none (black solid line). In Decision Curve Analysis, it is customary to consider only the range of risk-thresholds that may reasonably be considered in clinical practice. Our upper bound of 0.30 represents around a one-in-three chance of developing MetS should nothing change, and it is unlikely that risk thresholds greater would be tolerated. Net harm (i.e., more false positives than true positives exposed to an intervention at a selected risk threshold) is indicated when the decision curve line is plotted at y<0. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)