| Literature DB >> 36038828 |
Ruoyang Feng1, Mengnan Lu2, Jiawen Xu3, Feng Zhang4, Mingyi Yang1, Pan Luo1, Ke Xu1, Peng Xu5.
Abstract
BACKGROUND: The incidence of pulmonary embolism complications in the literature ranges from 10 to 50%, with a 0.5-10% risk of fatal pulmonary embolism. However, the biological cause of pulmonary embolism is unknown.Entities:
Keywords: Genetic correlation; Genome-wide association study; Human blood metabolites; Pulmonary embolism
Mesh:
Substances:
Year: 2022 PMID: 36038828 PMCID: PMC9422150 DOI: 10.1186/s12863-022-01082-6
Source DB: PubMed Journal: BMC Genom Data ISSN: 2730-6844
Genetic correlation between human blood metabolites and pulmonary embolism (P value < 0.05)
| Blood metabolites | Gene | Genetic Correlation | ||
|---|---|---|---|---|
| pulmonary embolism | 1-stearoylglycerophosphoethanolamine | LIPC | 0.0047 | 0.008 |
| X-12100--hydroxytryptophan | USE1 | 0.0045 | 0.0435 | |
| N1-methyladenosine | SPATA20 | 0.185 | 0.0439 | |
| valine | GYPA | 0.1569 | 0.0274 | |
| X-12029 | CRISP2 | 0.0134 | 0.0073 | |
| X-11412 | AT1B2 | 0.1288 | 0.0476 |
GWAS data for pulmonary embolism were derived from a European cohort study of 448,312 pulmonary embolism cases and 3952 controls. GWAS data for human blood metabolites were also derived from a European cohort study involving 529 metabolites in plasma or serum of 7824 adults. We used LD score regression software (https://github.com/bulik/ldsc) to complete genetic correlation analysis between pulmonary embolism and blood metabolites
Fig. 1Scatter plot of the results obtained by genetic correlation analysis between pulmonary embolism and human blood metabolites. A scatter plot was used to analyze the genetic correlation between pulmonary embolism and human blood metabolites. Each dot represents a blood metabolite. The X-axis represents the blood metabolites, and the Y-axis represents the -log of the p-value of the analysis results
The results of causal analysis of human blood metabolites (exposure) and pulmonary embolism (outcome)
| Exposure group | Number of SNP | Analytical method | Beta | SE | 95%CI | P |
|---|---|---|---|---|---|---|
| 1-stearoylglycerophosphoethanolamine | 1 | Wald ratio | −0.009597 | 0.007869 | (−0.0250, 0.0059) | 0.2226 |
| X-12100--hydroxytryptophan | 2 | IVW | −0.0294 | 0.01056 | (−0.0087, − 0.0500) | 0.005349 |
| X-11412 | 1 | Wald ratio | −0.01947 | 0.0178 | (−0.0543,0.0154) | 0.274 |
| X-12029 | 1 | NA | ||||
| N1-methyladenosine | 1 | Wald ratio | −0.006814 | 0.0306 | (−0.0668,0.0532 | 0.8238 |
| valine | 1 | Wald ratio | −0.02911 | 0.02328 | (−0.0747,0.0165 | 0.211 |
Tests were considered statistically significant at P values < 0.05. The MR base platform (http://app.mrbase.org/) was used for MR analyses
Fig. 2Forest map of the causal relationship between X-12100-hydroxytryptophan-associated SNPs and pulmonary embolism. Causality between X-12100-- Hydroxy Tryptophan) and Pulmonary embolism (outcome) was analyzed using an IVW model by MR analysis, and a significant causal relationship was found (β = − 0.0294, Se = 0.01056, P = 0.005349)
Results of causal analysis of pulmonary embolism (exposure) and human blood metabolites (outcome)
| Exposure group | Outcome group | Methods | Beta | SE | 95%CI | |
|---|---|---|---|---|---|---|
| pulmonary embolism | 1-stearoylglycerophosphoethanolamine | MR Egger | − 0.01012 | 2.555 | (− 5.0179,4.9977) | 0.9971 |
| Weighted median | −0.02833 | 0.9651 | (−1.9199,1.8633) | 0.9766 | ||
| Inverse variance weighted | 0.2539 | 0.8356 | (−1.4192,1.8917) | 0.7612 | ||
| pulmonary embolism | X-12100--hydroxytryptophan | MR Egger | −1.129 | 1.59 | (−4.2454,1.9874) | 0.5288 |
| Weighted median | −0.3097 | 0.6186 | (−1.5222,0.9028) | 0.6166 | ||
| Inverse variance weighted | 0.08013 | 0.5019 | (−0.9036,1.0639) | 0.8732 | ||
| pulmonary embolism | X-12029 | MR Egger | −1.365 | 1.078 | (−3.4779,0.7479) | 0.2946 |
| Weighted median | 0.007778 | 0.4192 | (−0.8139,0.8294) | 0.9852 | ||
| Inverse variance weighted | 0.3129 | 0.4308 | (−0.5315,1.1573) | 0.4675 | ||
| pulmonary embolism | X-11412 subunit beta-2 | MR Egger | −1.613 | 1.609 | (−4.7666,1.5406) | 0.3899 |
| Weighted median | −0.456 | 0.6179 | (−1.6671,0.7551) | 0.4605 | ||
| Inverse variance weighted | −0.1042 | 0.5212 | (−1.1258,0.9174) | 0.8415 | ||
| pulmonary embolism | N1-methyladenosine | MR Egger | 0.1411 | 0.9921 | (−1.8034,2.0856) | 0.8959 |
| Weighted median | −0.3065 | 0.3746 | (−1.0407,0.4277) | 0.4133 | ||
| Inverse variance weighted | −0.3298 | 0.3075 | (−0.9325,0.2729) | 0.2835 | ||
| pulmonary embolism | valine | MR Egger | −0.2964 | 1.072 | (−2.3975,1.8047) | 0.8002 |
| Weighted median | 0.4962 | 0.3983 | (−0.2844,1.2769) | 0.2129 | ||
| Inverse variance weighted | 0.5772 | 0.3468 | (−0.1025,1.2569) | 0.09607 |
Tests were considered statistically significant at P values < 0.05. Horizontal lines denote 95% confidence intervals. The MR base platform (http://app.mrbase.org/) was used for MR analyses
Fig. 3Heat map of differentially expressed genes between patients with pulmonary embolism and healthy control individuals. GSE19151, a dataset of microarray expression profiles downloaded from GEO, contained 10 pulmonary embolism samples and 7 healthy subjects. To analyze pulmonary embolism and differentially expressed genes (DEGs) among healthy people, we used GEO2R as a GEO analysis tool (https://www.ncbi.nlm.nih.gov/geo/geo2r/). We output the results into a heat map, where blue represents upregulated expression and green represents downregulated expression
Differential expression of genes encoding six blood metabolites proteins in pulmonary embolism
| Plasma protein | Gene | LogFC | |
|---|---|---|---|
| 1-stearoylglycerophosphoethanolamine | LIPC | 0.696 | 0.022751 |
| X-12100--hydroxytryptophan | IDO1 | 0.0337 | −0.210549 |
| N1-methyladenosine | NAT2 | 0.0025 | 0.0978175 |
GSE19151, a dataset of microarray expression profiles downloaded from GEO, contained 70 pulmonary embolism samples and 53 healthy subjects. To analyze pulmonary embolism and differentially expressed genes (DEGs) among healthy people, we used GEO2R as a GEO analysis tool (https://www.ncbi.nlm.nih.gov/geo/geo2r/)). We then looked for genes encoding six blood metabolites in DEGs