Literature DB >> 36036606

Genome Sequence of the Edible Green Alga Ulva prolifera, Originating from the Yoshinogawa River in Japan.

Keita Tamura1,2, Hidemasa Bono1,2.   

Abstract

We report the genome sequence of Ulva prolifera, which originated from the Yoshinogawa River in Japan, using Oxford Nanopore Technologies MinION and Illumina sequencing reads. The genome assembly size is 103.8 Mbp, consisting of 142 scaffolds with an N50 value of 4.11 Mbp.

Entities:  

Year:  2022        PMID： 36036606      PMCID： PMC9584216          DOI： 10.1128/mra.00430-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  10 in total

1.  Minimap2: pairwise alignment for nucleotide sequences.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2018-09-15       Impact factor: 6.937

2.  Assembly scaffolding with PE-contaminated mate-pair libraries.

Authors:  Kristoffer Sahlin; Rayan Chikhi; Lars Arvestad
Journal:  Bioinformatics       Date:  2016-03-02       Impact factor: 6.937

3.  Comparative study on mitogenomes of green tide algae.

Authors:  Chuner Cai; Feng Liu; Ting Jiang; Lingke Wang; Rui Jia; Lingjie Zhou; Kai Gu; Jianfeng Ren; Peimin He
Journal:  Genetica       Date:  2018-10-30       Impact factor: 1.082

4.  Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.

Authors:  Olivier De Clerck; Shu-Min Kao; Kenny A Bogaert; Jonas Blomme; Fatima Foflonker; Michiel Kwantes; Emmelien Vancaester; Lisa Vanderstraeten; Eylem Aydogdu; Jens Boesger; Gianmaria Califano; Benedicte Charrier; Rachel Clewes; Andrea Del Cortona; Sofie D'Hondt; Noe Fernandez-Pozo; Claire M Gachon; Marc Hanikenne; Linda Lattermann; Frederik Leliaert; Xiaojie Liu; Christine A Maggs; Zoë A Popper; John A Raven; Michiel Van Bel; Per K I Wilhelmsson; Debashish Bhattacharya; Juliet C Coates; Stefan A Rensing; Dominique Van Der Straeten; Assaf Vardi; Lieven Sterck; Klaas Vandepoele; Yves Van de Peer; Thomas Wichard; John H Bothwell
Journal:  Curr Biol       Date:  2018-09-13       Impact factor: 10.834

5.  BESST--efficient scaffolding of large fragmented assemblies.

Authors:  Kristoffer Sahlin; Francesco Vezzi; Björn Nystedt; Joakim Lundeberg; Lars Arvestad
Journal:  BMC Bioinformatics       Date:  2014-08-15       Impact factor: 3.169

6.  fastp: an ultra-fast all-in-one FASTQ preprocessor.

Authors:  Shifu Chen; Yanqing Zhou; Yaru Chen; Jia Gu
Journal:  Bioinformatics       Date:  2018-09-01       Impact factor: 6.937

7.  Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.

Authors:  Michael J Roach; Simon A Schmidt; Anthony R Borneman
Journal:  BMC Bioinformatics       Date:  2018-11-29       Impact factor: 3.169

8.  Efficient assembly of nanopore reads via highly accurate and intact error correction.

Authors:  Ying Chen; Fan Nie; Shang-Qian Xie; Ying-Feng Zheng; Qi Dai; Thomas Bray; Yao-Xin Wang; Jian-Feng Xing; Zhi-Jian Huang; De-Peng Wang; Li-Juan He; Feng Luo; Jian-Xin Wang; Yi-Zhi Liu; Chuan-Le Xiao
Journal:  Nat Commun       Date:  2021-01-04       Impact factor: 14.919

9.  BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.

Authors:  Mosè Manni; Matthew R Berkeley; Mathieu Seppey; Felipe A Simão; Evgeny M Zdobnov
Journal:  Mol Biol Evol       Date:  2021-09-27       Impact factor: 16.240
  10 in total

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