Literature DB >> 36036589

An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas.

Jason E Stajich1,2, Brian Lovett3, Cassandra L Ettinger1,2, Derreck A Carter-House1,2, Tania Kurbessoian1,2, Matt T Kasson3.   

Abstract

A 1.488-Gb draft genome sequence was assembled for the fungus Massospora cicadina, an obligate parasite of periodical cicadas. The M. cicadina genome has experienced massive expansion via transposable elements (TEs), which account for 92% of the genome.

Entities:  

Year:  2022        PMID： 36036589      PMCID： PMC9584336          DOI： 10.1128/mra.00367-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  37 in total

1.  A combined transmembrane topology and signal peptide prediction method.

Authors:  Lukas Käll; Anders Krogh; Erik L L Sonnhammer
Journal:  J Mol Biol       Date:  2004-05-14       Impact factor: 5.469

2.  UniRef: comprehensive and non-redundant UniProt reference clusters.

Authors:  Baris E Suzek; Hongzhan Huang; Peter McGarvey; Raja Mazumder; Cathy H Wu
Journal:  Bioinformatics       Date:  2007-03-22       Impact factor: 6.937

3.  Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

Authors:  Mario Stanke; Mark Diekhans; Robert Baertsch; David Haussler
Journal:  Bioinformatics       Date:  2008-01-24       Impact factor: 6.937

4.  Repbase Update, a database of repetitive elements in eukaryotic genomes.

Authors:  Weidong Bao; Kenji K Kojima; Oleksiy Kohany
Journal:  Mob DNA       Date:  2015-06-02

5.  Metagenome-Assembled Genomes of Bacteria Associated with Massospora cicadina Fungal Plugs from Infected Brood VIII Periodical Cicadas.

Authors:  Cassandra L Ettinger; Brian Lovett; Matt T Kasson; Jason E Stajich
Journal:  Microbiol Resour Announc       Date:  2022-08-29

6.  Evolutionary relationships among Massospora spp. (Entomophthorales), obligate pathogens of cicadas.

Authors:  Angie M Macias; David M Geiser; Jason E Stajich; Piotr Łukasik; Claudio Veloso; DeAnna C Bublitz; Matthew C Berger; Greg R Boyce; Kathie Hodge; Matt T Kasson
Journal:  Mycologia       Date:  2020-05-15       Impact factor: 2.696

7.  InterProScan 5: genome-scale protein function classification.

Authors:  Philip Jones; David Binns; Hsin-Yu Chang; Matthew Fraser; Weizhong Li; Craig McAnulla; Hamish McWilliam; John Maslen; Alex Mitchell; Gift Nuka; Sebastien Pesseat; Antony F Quinn; Amaia Sangrador-Vegas; Maxim Scheremetjew; Siew-Yit Yong; Rodrigo Lopez; Sarah Hunter
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

8.  Fast and accurate de novo genome assembly from long uncorrected reads.

Authors:  Robert Vaser; Ivan Sović; Niranjan Nagarajan; Mile Šikić
Journal:  Genome Res       Date:  2017-01-18       Impact factor: 9.043

9.  Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.

Authors:  Brian J Haas; Steven L Salzberg; Wei Zhu; Mihaela Pertea; Jonathan E Allen; Joshua Orvis; Owen White; C Robin Buell; Jennifer R Wortman
Journal:  Genome Biol       Date:  2008-01-11       Impact factor: 13.583
View more
  1 in total

1.  Metagenome-Assembled Genomes of Bacteria Associated with Massospora cicadina Fungal Plugs from Infected Brood VIII Periodical Cicadas.

Authors:  Cassandra L Ettinger; Brian Lovett; Matt T Kasson; Jason E Stajich
Journal:  Microbiol Resour Announc       Date:  2022-08-29
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.