| Literature DB >> 36035880 |
Ahmed M Sallam1, Aymen A Gad-Allah2, Essam M Albetar2.
Abstract
The objective of this study was to investigate the genetic polymorphisms in the keratin-associated protein (KAP22-1) gene in Barki ( n = 206 ), Rahmani ( n = 28 ) and Ossimi ( n = 28 ) as the three major sheep breeds in Egypt. Subsequently, the detected variants were correlated with important wool traits. The traits included greasy fleece weight (GFW, g), staple length (SL, cm), prickle factor (PF, %), medullated fiber (MF, %), fiber diameter (FD, µ m), crimp percentage (CR, %) and the standard deviation of FD (SD fd , µ m), as well as the subjectively assessed traits of kemp score (KS), handle grade (HG), greasy color grade (GCG), bulk grade (BG), luster grade (LG) and staple structure (SST). Animals were genotyped by polymerase chain reaction (PCR) - single strand conformation polymorphism (SSCP). Five SSCP banding patterns representing three different nucleotide variants (A, B and C) were detected. DNA sequencing confirmed three single nucleotide polymorphisms (SNPs). Animal age significantly affected GFW ( P = 0.007 ), SD fd ( P = 0.006 ), SL ( P = 0.002 ), CR ( P = 0.006 ), KS ( P = 0.001 ), LG ( P = 0.006 ) and SST ( P = 0.013 ). Likewise, the breed had a significant effect on all studied traits except HG and BG, which was not significant. Results showed significant associations between the KAP22-1 variants and CR ( P = 0.01 ), SL ( P = 0.012 ), KS ( P < 0.001 ) and GCG ( P = 0.01 ). Interestingly, animals with BB genotypes tended to produce more wool yield ( 1163.63 ± 65.91 g) with high SL ( 8.38 ± 0.20 cm), CR ( 8.38 ± 0.21 %) and KS ( 1.98 ± 1.88 ). Results of this study strongly recommend the KAP22-1 gene as a candidate gene for wool production traits in Egyptian sheep, with new useful insights into the visually assessed wool traits. The identified genetic markers may be incorporated into breeding strategies and genetic improvement programs of wool traits in Egyptian sheep. Copyright:Entities:
Year: 2022 PMID: 36035880 PMCID: PMC9399921 DOI: 10.5194/aab-65-293-2022
Source DB: PubMed Journal: Arch Anim Breed ISSN: 0003-9438
Phenotypic characteristics of wool production traits in Egyptian sheep.
| Traits | Breeds | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Barki (206) | Rahmani (28) | Ossimi (28) | ||||||||||
| Av. | SD | Min. | Max. | Av. | SD | Min. | Max. | Av. | SD | Min. | Max. | |
| GFW, g | 1128.22 | 379.38 | 300 | 1900 | NA | NA | NA | NA | NA | NA | NA | NA |
| SL, cm | 8.01 | 1.75 | 4.33 | 13.00 | 8.61 | 1.41 | 6.5 | 11 | 7.15 | 2.06 | 4 | 12.66 |
| FD, | 26.55 | 4.48 | 18.35 | 49.68 | 25.83 | 3.11 | 18.85 | 29.88 | 30.28 | 3.43 | 23.28 | 38.76 |
| SD | 15.26 | 8.13 | 7.37 | 48.64 | 11.56 | 3.14 | 6.95 | 9.13 | 14.66 | 4.55 | 8.06 | 23.86 |
| MF% | 13.69 | 9.76 | 0.6 | 42.4 | 13.24 | 5.61 | 5.2 | 25.4 | 10.86 | 5.57 | 4.6 | 25.6 |
| PF% | 26.00 | 3.88 | 10.11 | 63.18 | 21.1 | 10.46 | 1.4 | 40.6 | 33.34 | 10.69 | 49.2 | 12 |
| CR% | 1.11 | 0.38 | 0.25 | 1.65 | 0.78 | 0.14 | 0.48 | 1.01 | 0.62 | 0.15 | 0.9 | 0.39 |
GFW: greasy fleece weight (g); SL: staple length (cm); FD: fiber diameter (m); SD: the standard deviation of FD; MF: modulated fiber; PF: pickle factor; CR: crimp percentage %. Av.: average; SD: standard deviation; Min.: minimum; Max.: maximum; NA: not available.
Genotypic and allelic frequencies of the amplified region of the ovine KAP22-1 in Egyptian sheep breeds.
| Breed | Allele frequency | Genotype frequency | ||||||
|---|---|---|---|---|---|---|---|---|
| A | B | C | AA | AB | BB | BC | CC | |
| Barki | 0.48 | 0.52 | 0 | 0.2 | 0.58 | 0.22 | 0 | 0 |
| Rahmani | 0.45 | 0.55 | 0 | 0.31 | 0.33 | 0.36 | 0 | 0 |
| Ossimi | 0.44 | 0.41 | 0.15 | 0.28 | 0.36 | 0.18 | 0.07 | 0.11 |
| Total | 0.48 | 0.51 | 0.01 | 0.22 | 0.54 | 0.23 | 0.007 | 0.01 |
Frequency in the whole studied population.
Effect of breed on the studied wool traits in Egyptian sheep.
| Traits | Breed | |||
|---|---|---|---|---|
| Barki (206) | Rahmani (28) | Ossimi (23) | ||
| GFW, g | 1021.25 | NA | NA | NA |
| SL, cm | 7.66 | 7.28 | 8.52 | 0.013 |
| MF% | 14.31 | 8.89 | 11.89 | 0.05 |
| PF% | 22.74 | 33.16 | 20.18 | 0.001 |
| FD, | 26.92 | 30.95 | 26.24 | 0.0001 |
| SD | 16.55 | 16.27 | 12.59 | 0.042 |
| CR% | 1.10 | 0.63 | 0.77 | 0.001 |
| KS | 1.6 | 0.001 | ||
| HG | 0.74 | 0.07 | ||
| LG | 0.003 | |||
| BG | 0.029 | 0.8 | ||
| GCG | 1.51 | NA | 0.04 | 0.004 |
| SST | 0.001 | |||
Predicted least-square means and standard errors from GLMs. The significance values 0.05 are in bold. NA: not available; GFW: greasy fleece weight (g); SL: staple length (cm); PF: prickle factor; MF: modulated fiber; FD: fiber diameter (m); SD: the standard deviation of FD; KS: kemp score; HG: handle grade; CR: crimp percentage %; GCG: greasy color grade; BG: bulk grade; LG: luster grade; SST: staple structure.
Predicted least-square means and standard errors of the effect of age of ewe on the studied wool traits in Barki sheep.
| Traits | Age of ewe (N) | |||||
|---|---|---|---|---|---|---|
| First (76) | Second (72) | Third (28) | Fourth (6) | Fifth (12) | ||
| GFW, g | 1208.96 | 1135.02 | 1150.06 | 661.96 | 953.14 | 0.007 |
| SL, cm | 8.14 | 8.39 | 8.34 | 7.01 | 7.21 | 0.002 |
| MF% | 12.14 | 9.62 | 14.04 | 12.63 | 10.06 | 0.15 |
| PF% | 26.99 | 26.88 | 26.48 | 21.82 | 24.63 | 0.27 |
| FD, | 28.75 | 27.70 | 28.66 | 27.21 | 27.87 | 0.38 |
| SD | 17.95 | 13.65 | 14.85 | 14.75 | 14.58 | 0.006 |
| CR% | 1.10 | 1.17 | 0.87 | 0.76 | 0.9 | 0.006 |
| KS | 0.63 | 1.09 | 1.40 | 1.95 | 1.99 | 0.001 |
| HG | 0.36 | |||||
| LG | 0.11 | 0.32 | 0.68 | 0.72 | 0.006 | |
| BG | 0.46 | |||||
| GCG | 0.73 | 0.61 | 0.52 | 0.25 | ||
| SST | 0.37 | 0.24 | 1.01 | 1.67 | 1.72 | 0.013 |
The significance values 0.05 are in bold. GFW: greasy fleece weight (g); SL: staple length (cm); MF: modulated fiber; PF: prickle factor; FD: fiber diameter (m); SD: the standard deviation of FD; CR: crimp percentage %; KS: kemp score; HG: handle grade; LG: luster grade; BG: bulk grade; GCG: greasy color grade; SST: staple structure.
Predicted least-square means and standard errors of the effect of KAP22-1 genotypes on the studied wool traits in Egyptian sheep.
| Traits | Genotypes | |||
|---|---|---|---|---|
| AA (40) | AB (111) | BB (43) | ||
| GFW, g | 1054.76 | 1141.53 | 1163.63 | 0.28 |
| SL, cm | 8.27 | 7.95 | 8.38 | 0.012 |
| MF% | 12.6 | 13.55 | 12.49 | 0.77 |
| PF% | 26.19 | 26.35 | 24.57 | 0.78 |
| FD, | 26.43 | 26.99 | 26.80 | 0.20 |
| SD | 13.69 | 14.89 | 14.85 | 0.51 |
| CR% | 0.97 | 7.95 | 8.38 | 0.01 |
| KS | 0.45 | 0.39 | 1.98 | 0.01 |
| HG | 0.54 | 0.58 | 0.74 | |
| LG | 0.22 | 0.73 | ||
| BG | 0.71 | 1.18 | 0.98 | 0.75 |
| GCG | 0.40 | 0.25 | 0.01 | |
| SST | 0.1 | |||
The significance values 0.05 are in bold. GFW: greasy fleece weight (g); SL: staple length (cm); MF: medullated fiber; PF: prickle factor; FD: fiber diameter (m); SD: the standard deviation of FD; CR: crimp percentage %; KS: kemp score; HG: handle grade; LG: luster grade; BG: bulk grade; GCG: greasy color grade; SST: staple structure.