| Literature DB >> 36033857 |
Xinlu Liu1,2,3, Zhiwei Wang1,2,3, Jianjian Xiao1,2,3, Xin Zhou1,2,3, Yong Xu1,2,3.
Abstract
Gluconobacter oxydans has been widely acknowledged as an ideal strain for industrial bio-oxidations with fantastic yield and productivity. Even 600 g/L xylose can be catalyzed efficiently in a sealed and compressed oxygen-supplying bioreactor. Therefore, the present study seeks to explore the osmotic stress tolerance against extra-high titer of representative lignocellulosic sugars like glucose. Gluconobacter oxydans can well adapted and fermented with initial 600 g/L glucose, exhibiting the highest bio-tolerance in prokaryotic strains and the comparability to the eukaryotic strain of Saccharomyces cerevisiae. 1,432 differentially expressed genes corresponding to osmotic pressure are detected through transcriptome analysis, involving several genes related to the probable compatible solutes (trehalose and arginine). Gluconobacter oxydans obtains more energy by enhancing the substrate-level phosphorylation, resulting in the increased glucose consumption rate after fermentation adaption phase. This study will provide insights into further investigation of biological tolerance and response to extra-high titers of glucose of G. oxydans.Entities:
Keywords: Gluconobacter oxydans; extra-high titers of glucose; lignocellulosic sugar fermentation; osmotic stress tolerance; transcriptome analysis
Year: 2022 PMID: 36033857 PMCID: PMC9412170 DOI: 10.3389/fmicb.2022.977024
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
Primers used for qRT-PCR in this study.
| Gene | Sequence (5′–3′) |
|---|---|
| 16S-F | AGGACCTGATTACTGTCTTCGG |
| 16S-R | TTCCACGCACCATTTCTTC |
| VZ55_RS06850-F | GTTGGACAGGCTGTTGCG |
| VZ55_RS06850-R | TAGGGGGAGATATTCGGG |
| VZ55_RS10065-F | GAACCTCGTTTACATCCCA |
| VZ55_RS10065-R | GACAGCTTACCCGTCTCTG |
| VZ55_RS08395-F | CGGTGAGATTGAGTGGGC |
| VZ55_RS08395-R | ATCGGCAGGTAAAGCAGG |
| VZ55_RS05735-F | TGGACAGCACCAAGAGCA |
| VZ55_RS05735-R | CCCGAGAGGAGCATCAGA |
| VZ55_RS08235-F | ACACCGACCAACAAACCT |
| VZ55_RS08235-R | ATTCCAAGCGGGACGTAA |
F/R: forward primer/reverse primer.
Figure 1Spot assays of the E. coli (A) grown on LB medium, S. cerevisiae grown on YPG medium (B), and G. oxydans (C) grown on YS medium at different glucose titers.
Figure 2Glucose consumption of the E. coli (A), S. cerevisiae (B), and G. oxydans (C) at different glucose titers.
Figure 3The production of GA, 2-KGA and 5-KGA in various glucose titers. (A) Initial 100 g/L glucose; (B) initial 200 g/L glucose; (C) initial 400 g/L glucose; (D) initial 600 g/L glucose.
Figure 4The effect of glucose titers on the viable count of the G. oxydans (*p < 0.05, **p < 0.01).
Figure 5The effect of glucose titers on the whole-cell activity of the G. oxydans (*p < 0.05).
Figure 6The effect of glucose titers on the intra-cellular ATP concentration of the G. oxydans.
Figure 7Radar map (A) and Venn diagram (B) of DEGs in G. oxydans responding to extra-high titers of glucose (400 and 600 g/L) with 100 g/L as control. The filter criteria of DEGs were q < 0.05 and |log2FC| > 1. A parallel experiment was conducted in triplicate. (A) The outermost circle are the gene name and log2FC; the yellow and sky-blue circle represent up-regulated and down-regulated genes, respectively, and the size of the circle represents the size of the log2FC value; outer data of third circle represents the average expression amount of the initial 100 g/L glucose and inner data of third circle represents the average expression amount of the initial 400 g/L (or 600 g/L) glucose; the irregular shapes in the circles are the expression abundance on each axis for initial 100 g/L glucose and initial 400 g/L (or 600 g/L) glucose; the innermost circle center indicates the legend.
Figure 8KEGG enrichment analysis of the DEGs obtained at 400 g/L (A) and 600 g/L (B) glucose with 100 g/L as control. A parallel experiment was conducted in triplicate.
Figure 9Compared transcription levels of genes of interest by qPCR and RNA-Seq. (A) Gene expression levels in qPCR. (B) Comparison of gene expression level between qPCR and RNA-Seq. A parallel experiment was conducted in triplicate.