| Literature DB >> 36013573 |
Corina Iulia Cornean1, Andreea Catana2, Alma Aurelia Maniu1.
Abstract
Background andEntities:
Keywords: TERT; genetic susceptibility; glutathione S-transferases; laryngeal cancer; single-nucleotide polymorphism
Mesh:
Substances:
Year: 2022 PMID: 36013573 PMCID: PMC9415364 DOI: 10.3390/medicina58081106
Source DB: PubMed Journal: Medicina (Kaunas) ISSN: 1010-660X Impact factor: 2.948
Genotyping technique.
| Polymorphism | DNA Extraction Kit | Specific Primer Sequence | Temperature | Time | Cycles |
|---|---|---|---|---|---|
| TERTRs2736100 | Wizard Genomic DNA Purification Kit | GAAAAGCAGGGCGGGGGCACAAGCTA [A/C] AGAAACACTCAACACGGAAAACAAT | 95 °C | 10 min | X1 |
| 92 °C | 15 s | X40 | |||
| 60 °C | 1 min | ||||
| GSTM1 | TaqMan™ Genotyping Master Mix | PF 5′-GAACTCCCTGAAAAGCTAAAGC-3′ | 94 °C | 5 min | X1 |
| PR 5′-TTCCTTACTGGTCCTCACATCTC-3′ | 94 °C | 1 min | X35 | ||
| GSTT1 | PF 5′-TTCCTTACTGGTCCTCACATCTC-3′ | 58 °C | 1 min | ||
| PR 5′-TCACCGGATCATGGCCAGCA-3′ | 72 °C | 1 min | |||
| 72 °C | 10 min | Final extension | |||
: Abbreviations: forward primer (PF); reverse primer (PR); A: adenine; G: guanine; C: cytosine; T: thymine.
Distribution of patients and controls according to demographic characteristics.
| Variables | Cases | Controls | χ2 | |
|---|---|---|---|---|
| Gender | ||||
| Male | 87 (94.57%) | 92 (91.09%) | 0.86 | 0.41 |
| Female | 5 (5.43%) | 9 (8.91%) | ||
| Age (years) | ||||
| Mean | 60 ± 7.79 | 62 ± 6.59 | 3.85 | 0.06 |
| <62 | 54 (58.7%) | 45 (44.44%) | ||
| ≥62 | 38 (41.30%) | 56 (55.45%) | ||
| Tobacco consumption | ||||
| Mean | 29 ± 7.92 | 28 ± 7.21 | ||
| <29 years | 31 (33.70%) | 45 (44.55%) | 2.37 | 0.14 |
| ≥29 years | 61 (66.30%) | 56 (55.45%) | ||
Two-sided chi-square test (χ2). Tobacco consumption: light smoking (<29 years), heavy smoking (≥29 years).
Genotype and frequency distribution of TERTRs2736100, GSTM1, and GSTT1 genotypes in subjects and controls.
| Polymorphism | Cases | Controls | χ2 | |
|---|---|---|---|---|
| AA | 24 (26.09%) | 26 (25.74%) | 1.51 | 0.46 |
| AC | 32 (34.78%) | 43 (42.57%) | ||
| CC | 36 (39.13%) | 32 (31.68%) | ||
| Alele C | 104 (%) | 107 (%) | 0.49 | 0.53 |
| Alele A | 80 (%) | 95 (7%) | ||
| positive (+) | 41 (44.57%) | 52 (51.49%) | 0.92 | 0.38 |
| null (−) | 51 (55.43%) | 49 (48.51%) | ||
| positive (+) | 61 (66.30%) | 81 (80.20%) | 4.78 | 0.03 |
| null (−) | 31 (33.70%) | 20 (19.80%) | ||
| Genotype 00 | 28 (30.43%) | 43 (42.57%) | 5.67 | 0.12 |
| Genotype 01 | 12 (13.04%) | 9 (8.91%) | ||
| Genotype 10 | 33(35.87%) | 38 (37.62%) | ||
| Genotype 11 | 19 (20.65%) | 11 (10.89%) | ||
Two-sided chi-square test (χ2). TERT genotypes: homozygote wild-type (AA); mutant heterozygote (AC); mutant homozygote (CC). GSTM1 genotypes: GSTM1(−), null genotype (deletion); GSTM1(+), positive genotype (no deletion); GSTT1 genotypes: GSTT1(−), null genotype (deletion); GSTT1(+), positive genotype (no deletion). Concurrent GSTM1/GSTT1 genotypes: wild-type genotype [GSTM1(+)/GSTT1 (+)], noted genotype 00; positive GSTM1-null GSTT1[GSTM1(+)/GSTT1(−)], noted genotype 01; null GSTM1-positive GSTT1[GSTM1(−)/GSTT1(+)], noted genotype 10; double deletion [GSTM1(−)/GSTT1(−), noted genotype 11]. Bold values indicate statistical significance per Fisher’s exact test after application of false discovery rate (FDR) correction, p < 0.05.
Relationship between TERTRs2736100, GSTM1, and GSTT1 genotypes, and laryngeal cancer susceptibility.
| Genetic Model | Crude OR | Adjusted OR | ||
|---|---|---|---|---|
|
| ||||
| AA | (Ref) 1.00 | (Ref) 1.00 | ||
| AC | 0.80 (0.36–1.76) | 0.58 | 0.80 (0.39–1.65) | 0.55 |
| CC | 1.21 (0.55–2.70) | 0.7 | 1.21 (0.58–2.53) | 0.59 |
| Dominant | 0.98 (0.49–1.97) | 1 | 0.98 (0.51–1.87) | 0.95 |
| Recessive | 1.38 (0.73–2.61) | 0.29 | 1.38 (0.76–2.50) | 0.27 |
| Allele C | (Ref) 1.00 | 0.53 | (Ref) 1.00 | 0.48 |
| Allele A | 1.15 (0.75–1.75) | 1.15 (0.77–1.72) | ||
|
| ||||
| GSTM1(+) | (Ref) 1.00 | (Ref) 1.00 | ||
| GSTM1(−) | 1.31 (0.72–2.42) | 0.38 | 1.34 (0.76–2.36) | 0.3 |
|
| ||||
| GSTT1(+) | (Ref) 1.00 | (Ref) 1.00 | ||
| GSTT1(−) | 2.05 (1.02–4.19) | 0.03 | 2.05 (1.07–3.95) | |
|
| ||||
| GSTM1(+)/GSTT1(+) | (Ref) 1.00 | (Ref) 1.00 | ||
| GSTM1(+)/GSTT1(−) | 2.03 (0.68–6.25) | 0.21 | 2.04 (0.76–5.49) | 0.15 |
| GSTM1(−)/GSTT1(+) | 1.33 (0.64–2.74) | 0.49 | 1.33 (0.68–2.59) | 0.39 |
| GSTM1(−)/GSTT1(−) | 2.62 (1.01–7.12) | 0.03 | 2.65 (1.09–6.40) | 0.02 |
OR: odds ratio; 95% CI: 95% confidence interval. TERT genotypes: dominant ((AC + CC) vs. AA), recessive (CC vs. (AA + AC)). Reference categories (OR = 1): the wild-type genotype and allele for each individual polymorphism. Adjusted OR, calculated in a logistic regression model without control for gender, age, or tobacco consumption. Bold values indicate statistical significance after application of FDR correction, p < 0.05.
Stratification analysis of the association between TERTRs2736100 and laryngeal cancer.
| TERTRs2736100 C/A | |||||||
|---|---|---|---|---|---|---|---|
| Variables | Number of Cases/Controls | Adjusted OR | |||||
| AA | AC | CC | AC vs. AA | CC vs. AA | (AC + CC) vs. AA | CC vs. (AA + AC) | |
| Gender | |||||||
| Male | 23/24 | 31/37 | 33/31 | 1.11 (0.52–2.35), | 0.82 (0.42–1.62), | 1.27 (0.68–2.35), | |
| Female | 1/2 | 1/6 | 3/1 | 0.33 (0.01–8.15), | 5.99 (0.22–162.17), | 1.14 (0.07–16.91), | 12 (0.77–186.36), |
| Age (in years) | |||||||
| <62 | 16/13 | 17/16 | 21/16 | 0.86 (0.31–2.34), | 1.07 (0.40–2.88), | 0.96 (0.40–2.30), | 1.27 (0.56–2.86), |
| ≥62 | 8/13 | 15/27 | 15/16 | 0.90 (0.30–2.66), | 1.52 (0.49–4.70), | 1.47 (0.53–4.05), | 1.63 (0.68–3.89), |
| Smoking status (in years) | |||||||
| <29 | 7/12 | 8/17 | 16/16 | 0.80 (0.23–2.82), | 1.71 (0.53–5.47), | 1.24 (0.42–3.63), | 1.933 (0.76–4.91), |
| 17/14 | 24/26 | 20/16 | 0.76 (0.30–1.86), | 1.02 (0.39–2.70), | 0.90 (0.39–2.07), | 1.21 (0.55–2.68), | |
Abbreviations: OR: odds ratio; 95% CI: 95% confidence interval. Adjusted OR for covariates such as gender, age (in years), and tobacco consumption (in years) in a logistic regression model for each stratum. TERT genotypes: homozygote wild-type (AA); mutant heterozygote (AC); mutant homozygote (CC); dominant ((AC + CC) vs. AA), recessive (CC vs. (AA + AC)). Bold values indicate statistical significance after application of FDR correction, p < 0.05.
Stratification analysis of the association between the concurrent GSTM1/GSTT1 genotypes and laryngeal cancer.
| Combined GSTM1/GSTT1 | |||||||
|---|---|---|---|---|---|---|---|
| Variables | Number of Cases/Controls | Adjusted OR | |||||
| Genotype 00 | Genotype 01 | Genotype 10 | Genotype 11 | Genotype 01 vs. Genotype 00 | Genotype 10 vs. Genotype 00 | Genotype 11 vs. Genotype 00 | |
| Gender | |||||||
| Male | 26/40 | 11/7 | 32/34 | 18/11 | 2.41 (0.83–7.03), | ||
| Female | 2/3 | 1/2 | 1/4 | 1/0 | 0.75 (0.03–14.99), | 0.37 (0.03–17.50) |
|
| Age (in years) | |||||||
| <62 | 15/17 | 8/4 | 22/20 | 9/4 | 2.26 (0.56–9.06), | 1.24 (0.49–3.13), | 2.73 (0.69–10.78), |
| ≥62 | 13/26 | 4/5 | 11/18 | 10/7 | 1.60 (0.36–6.98), | 1.22 (0.44–3.33), | 2.85 (0.88–9.23), |
| Smoking status (in years) | |||||||
| <29 | 8/23 | 6/4 | 16/14 | 1/4 | 2.87 (0.57–14.27), | 3.28 (1.11–9.64), | 0.71 (0.06–7.41), |
| ≥29 | 20/20 | 6/5 | 17/24 | 18/7 | 1.19 (0.31–4.57), | 2.57 (0.88–7.49), | 0.70 (0.29–1.70), |
Abbreviations: OR: odds ratio; 95% CI: 95% confidence interval. Adjusted OR for covariates such as gender, age (in years), and tobacco consumption (in years) in a logistic regression model for each stratum. Concurrent GSTM1/GSTT1 genotypes: reference genotype noted genotype 00; positive GSTM1/null GSTT1 noted genotype 01; null GSTM1/positive GSTT1 noted genotype 10; double deletion noted genotype 11. OR could not be calculated due to zero values in one category. Bold values indicate statistical significance after application of FDR correction, p < 0.05.