| Literature DB >> 36009736 |
Yan Meng1, Yuding Fan1, Nan Jiang1, Mingyang Xue1, Yiqun Li1, Wenzhi Liu1, Lingbing Zeng1, Yong Zhou1.
Abstract
Amphibians, including Andrias davidianus, are declining worldwide partly due to infectious diseases. The Myxovirus resistance (Mx) gene is a typical interferon (IFN)-stimulated gene (ISG) involved in the antiviral immunity. Therefore, knowledge regarding the antiviral immunity of A. davidianus can be used for improved reproduction in captivity and protection in the wild. In this study, we amplified and characterized four different A. davidianus Mx genes (adMx) and generated temporal mRNA expression profiles in healthy and Chinese giant salamander iridovirus (GSIV) infected A. davidianus by qualitative real-time PCR (qPCR). The four adMx genes ranged in length from 2008 to 2840 bp. The sequences revealed conserved protein domains including the dynamin superfamily signature motif and the tripartite guanosine-5-triphosphate (GTP)-binding motif. Gene and deduced amino acid sequence alignment revealed relatively high sequence identity with the Mx genes and proteins of other vertebrates. In phylogenetic analysis, the adMx genes clustered together, but also clustered closely with those of fish species. The four adMx genes were broadly expressed in healthy A. davidianus, but were differentially expressed in the spleen during the GSIV infection. Our results show that the adMx genes share major structural features with their homologs, suggesting similar functions to those in other species.Entities:
Keywords: Andrias davidianus; Chinese giant salamander; Chinese giant salamander iridovirus (GSIV) infection; Mx; characterization; myxovirus resistance
Year: 2022 PMID: 36009736 PMCID: PMC9405346 DOI: 10.3390/ani12162147
Source DB: PubMed Journal: Animals (Basel) ISSN: 2076-2615 Impact factor: 3.231
Primers used in this study.
| Primer | Sequence (5′–3′) | Purpose |
|---|---|---|
| TGGAGGTTGTTGGAGCACAACAGAA | 3′-RACE | |
| TTGTGGTGCCAAGTAATGTGGATAT | ||
| GGTTGCTCAAACAAATGCAGAGTCTGAA | ||
| GCAGCCTGTGGAGAAGACATTTGTTCTAA | ||
| TCTCTCCGCCGGGATCCACCAGTCG | 5′-RACE | |
| GCAATCCCAGGAAGGTCAATCAGTG | ||
| CCACATTTCTTTAGTTCCTCTTTCGCTAC | ||
| ACAAATGTCTTCTCCACAGGCTGCGTT | ||
| ATCCCGCTGAAGAAGGGTTAC | qPCR | |
| CGTTTGCTGCGTCAAGTTTCT | ||
| TTCCCAGAGGCAGTGGTATTG | ||
| ACTTCTAAGGGCATTGTCAGG | ||
| CGAGGAGATGAATGGAGTGGG | ||
| CCACTCCTCCACCAGCCAGA | ||
| AGAGGCACTAGAAATGGCACG | ||
| TGTCCTGGATGTCCTGTTGC | ||
| EF1-αF | GGACAGACCCGTGAACATGC | Internal reference |
| EF1-αR | CTTCCTTAGTGATCTCCTCGTAGC |
Details of the four adMx cDNA sequences and relative indexes.
| Gene | Length | 5′-UTR | ORF | 3′-UTR | Amino Acids | MW | pI |
|---|---|---|---|---|---|---|---|
|
| 2808 | 1–54 | 55–2070 | 2071–2808 | 671 | 76,688.82 | 8.09 |
|
| 2635 | 1–53 | 54–1145 | 1146–2635 | 363 | 39,786.77 | 6.53 |
|
| 2840 | 1–124 | 125–2236 | 2237–2840 | 703 | 79,105.06 | 5.23 |
|
| 2008 | 1–38 | 39–1925 | 1926–2008 | 628 | 71,301.06 | 6.42 |
MW: Molecular weight; pI: Isoelectric point; ORF: Open reading frame; UTR: Untranslated region.
Figure 1Multiple sequence alignment of the adMx proteins. The ATP/GTP binding sequence is indicated with a red frame. The dynamin signature sequence is indicated by a red helix. Conserved amino acids are shaded as indicated with a purple frame. Dots indicate positions of amino acid deletion.
Figure 2The NJ phylogenic tree of different species based on Mx protein sequences constructed using MEGA. Sequence accession numbers used in the analysis are shown. Bootstrap percentages are shown on interior branches with the bootstrap values based on 1000 replications. Bars indicate genetic distances according to the 0.050 scale. (A, B, C, D) represent the four groups. The adMx1, adMx2, adMx3, and adMx4 proteins are indicated by a pale blue oval.
Figure 3The expression profiles of four adMx genes in different tissues from A. davidianus. Data represent the mean ± SE (n = 3). The letters above the columns indicate significant differences (p < 0.05). (A–D) represent the gene expression of adMx1, adMx2, adMx3, and adMx4 in different tissues.
Figure 4The adMx1, adMx2, adMx3, and adMx4 transcript levels in A. davidianus spleen following GSIV infection. Data represent the mean ± SE (n = 3). Different letters indicate significant differences (p < 0.05). (A–D) represent the gene expression of adMx1, adMx2, adMx3, and adMx4 in spleen treatment with GSIV.