Literature DB >> 36002444

qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data.

Agah Karakuzu1,2, Stefan Appelhoff3, Tibor Auer4, Mathieu Boudreau5,6, Franklin Feingold7, Ali R Khan8, Alberto Lazari9, Chris Markiewicz7, Martijn Mulder10, Christophe Phillips11, Taylor Salo12, Nikola Stikov5,6,13, Kirstie Whitaker14, Gilles de Hollander15,16.   

Abstract

The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging.
© 2022. The Author(s).

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Year:  2022        PMID: 36002444      PMCID: PMC9402561          DOI: 10.1038/s41597-022-01571-4

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   8.501


  58 in total

1.  Actual flip-angle imaging in the pulsed steady state: a method for rapid three-dimensional mapping of the transmitted radiofrequency field.

Authors:  Vasily L Yarnykh
Journal:  Magn Reson Med       Date:  2007-01       Impact factor: 4.668

2.  Flexible real-time magnetic resonance imaging framework.

Authors:  Juan M Santos; Graham A Wright; John M Pauly
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

Review 3.  An overview of deep learning in medical imaging focusing on MRI.

Authors:  Alexander Selvikvåg Lundervold; Arvid Lundervold
Journal:  Z Med Phys       Date:  2018-12-13       Impact factor: 4.820

4.  Pulse sequence programming in a dynamic visual environment: SequenceTree.

Authors:  Jeremy F Magland; Cheng Li; Michael C Langham; Felix W Wehrli
Journal:  Magn Reson Med       Date:  2015-03-07       Impact factor: 4.668

Review 5.  On modeling.

Authors:  Dmitry S Novikov; Valerij G Kiselev; Sune N Jespersen
Journal:  Magn Reson Med       Date:  2018-03-01       Impact factor: 4.668

6.  Magnetization transfer contrast (MTC) and tissue water proton relaxation in vivo.

Authors:  S D Wolff; R S Balaban
Journal:  Magn Reson Med       Date:  1989-04       Impact factor: 4.668

7.  MP2RAGE, a self bias-field corrected sequence for improved segmentation and T1-mapping at high field.

Authors:  José P Marques; Tobias Kober; Gunnar Krueger; Wietske van der Zwaag; Pierre-François Van de Moortele; Rolf Gruetter
Journal:  Neuroimage       Date:  2009-10-09       Impact factor: 6.556

8.  The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Authors:  Krzysztof J Gorgolewski; Tibor Auer; Vince D Calhoun; R Cameron Craddock; Samir Das; Eugene P Duff; Guillaume Flandin; Satrajit S Ghosh; Tristan Glatard; Yaroslav O Halchenko; Daniel A Handwerker; Michael Hanke; David Keator; Xiangrui Li; Zachary Michael; Camille Maumet; B Nolan Nichols; Thomas E Nichols; John Pellman; Jean-Baptiste Poline; Ariel Rokem; Gunnar Schaefer; Vanessa Sochat; William Triplett; Jessica A Turner; Gaël Varoquaux; Russell A Poldrack
Journal:  Sci Data       Date:  2016-06-21       Impact factor: 6.444

9.  MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites.

Authors:  Oscar Esteban; Daniel Birman; Marie Schaer; Oluwasanmi O Koyejo; Russell A Poldrack; Krzysztof J Gorgolewski
Journal:  PLoS One       Date:  2017-09-25       Impact factor: 3.240

10.  Quantifying the local tissue volume and composition in individual brains with magnetic resonance imaging.

Authors:  Aviv Mezer; Jason D Yeatman; Nikola Stikov; Kendrick N Kay; Nam-Joon Cho; Robert F Dougherty; Michael L Perry; Josef Parvizi; Le H Hua; Kim Butts-Pauly; Brian A Wandell
Journal:  Nat Med       Date:  2013-11-03       Impact factor: 53.440

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