Literature DB >> 35997919

Functional characterization of two WD40 family proteins, Alr0671 and All2352, from Anabaena PCC 7120 and deciphering their role in abiotic stress management.

Krishna Kumar Rai1, Shilpi Singh1, Ruchi Rai1, L C Rai2.   

Abstract

WD40 domain-containing proteins are one of the eukaryotes' most ancient and ubiquitous protein families. Little is known about the presence and function of these proteins in cyanobacteria in general and Anabaena in particular. In silico analysis confirmed the presence of WD40 repeats. Gene expression analysis indicated that the transcript levels of both the target proteins were up-regulated up to 4 fold in Cd and drought and 2-3 fold in heat, salt, and UV-B stress. Using a fluorescent oxidative stress indicator, we showed that the recombinant proteins were scavenging reactive oxygen species (ROS) (4-5 fold) more efficiently than empty vectors. Chromatin immunoprecipitation analysis (ChIP) and electrophoretic mobility shift assay (EMSA) revealed that the target proteins function as transcription factors after binding to the promoter sequences. The presence of kinase activity (2-4 fold) in the selected proteins indicated that these proteins could modulate the functions of other cellular proteins under stress conditions by inducing phosphorylation of specific amino acids. The chosen proteins also demonstrated interaction with Zn, Cd, and Cu (1.4-2.5 fold), which might stabilize the proteins' structure and biophysical functions under multiple abiotic stresses. The functionally characterized Alr0671 and All2352 proteins act as transcription factors and offer tolerance to agriculturally relevant abiotic stresses.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Abiotic stress tolerance; Anabaena; ChIP; EMSA; Promoter analysis; WD40 proteins

Year:  2022        PMID: 35997919     DOI: 10.1007/s11103-022-01306-4

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.335


  48 in total

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2.  Improved eco-friendly recombinant Anabaena sp. strain PCC7120 with enhanced nitrogen biofertilizer potential.

Authors:  Akhilesh Kumar Chaurasia; Shree Kumar Apte
Journal:  Appl Environ Microbiol       Date:  2010-11-05       Impact factor: 4.792

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Authors:  C Colovos; T O Yeates
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4.  QMEAN server for protein model quality estimation.

Authors:  Pascal Benkert; Michael Künzli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

5.  Structural determinants of metal specificity in the zinc transport protein ZnuA from synechocystis 6803.

Authors:  Soojay Banerjee; Baoxian Wei; Maitrayee Bhattacharyya-Pakrasi; Himadri B Pakrasi; Thomas J Smith
Journal:  J Mol Biol       Date:  2003-11-07       Impact factor: 5.469

6.  The PMDB Protein Model Database.

Authors:  Tiziana Castrignanò; Paolo D'Onorio De Meo; Domenico Cozzetto; Ivano Giuseppe Talamo; Anna Tramontano
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  MEME: discovering and analyzing DNA and protein sequence motifs.

Authors:  Timothy L Bailey; Nadya Williams; Chris Misleh; Wilfred W Li
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  A Novel Aldo-Keto Reductase (AKR17A1) of Anabaena sp. PCC 7120 Degrades the Rice Field Herbicide Butachlor and Confers Tolerance to Abiotic Stresses in E. coli.

Authors:  Chhavi Agrawal; Sonia Sen; Shivam Yadav; Shweta Rai; Lal Chand Rai
Journal:  PLoS One       Date:  2015-09-15       Impact factor: 3.240

9.  Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Authors:  Sayoni Das; David Lee; Ian Sillitoe; Natalie L Dawson; Jonathan G Lees; Christine A Orengo
Journal:  Bioinformatics       Date:  2016-07-31       Impact factor: 6.937

10.  The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria.

Authors:  Samujjal Bhattacharjee; Arun Kumar Mishra
Journal:  J Exp Bot       Date:  2020-08-06       Impact factor: 6.992

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