Literature DB >> 27477482

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Sayoni Das, David Lee, Ian Sillitoe, Natalie L Dawson, Jonathan G Lees, Christine A Orengo.   

Abstract

Year:  2016        PMID： 27477482      PMCID： PMC5018379          DOI： 10.1093/bioinformatics/btw473

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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Bioinformatics (2015) 31(21):3460–3467. Author, Sayoni Das, would like to report a typographical error in Equation (2) in the above article. Equation (2), on page 3462, should read as follows:
  8 in total

1.  Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici).

Authors:  Mohd Aamir; Vinay Kumar Singh; Manish Kumar Dubey; Sarvesh Pratap Kashyap; Andleeb Zehra; Ram Sanmukh Upadhyay; Surendra Singh
Journal:  PLoS One       Date:  2018-04-30       Impact factor: 3.240

2.  Accurate protein function prediction via graph attention networks with predicted structure information.

Authors:  Boqiao Lai; Jinbo Xu
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 11.622

3.  Functional characterization of two WD40 family proteins, Alr0671 and All2352, from Anabaena PCC 7120 and deciphering their role in abiotic stress management.

Authors:  Krishna Kumar Rai; Shilpi Singh; Ruchi Rai; L C Rai
Journal:  Plant Mol Biol       Date:  2022-08-23       Impact factor: 4.335

4.  BUSCA: an integrative web server to predict subcellular localization of proteins.

Authors:  Castrense Savojardo; Pier Luigi Martelli; Piero Fariselli; Giuseppe Profiti; Rita Casadio
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

5.  Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.

Authors:  Mohd Aamir; Vinay K Singh; Mukesh Meena; Ram S Upadhyay; Vijai K Gupta; Surendra Singh
Journal:  Front Plant Sci       Date:  2017-05-29       Impact factor: 5.753

6.  Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.

Authors:  Khader Shameer; Benjamin S Glicksberg; Rachel Hodos; Kipp W Johnson; Marcus A Badgeley; Ben Readhead; Max S Tomlinson; Timothy O'Connor; Riccardo Miotto; Brian A Kidd; Rong Chen; Avi Ma'ayan; Joel T Dudley
Journal:  Brief Bioinform       Date:  2018-07-20       Impact factor: 11.622

7.  In silico Prediction, Characterization, Molecular Docking, and Dynamic Studies on Fungal SDRs as Novel Targets for Searching Potential Fungicides Against Fusarium Wilt in Tomato.

Authors:  Mohd Aamir; Vinay Kumar Singh; Manish Kumar Dubey; Mukesh Meena; Sarvesh Pratap Kashyap; Sudheer Kumar Katari; Ram Sanmukh Upadhyay; Amineni Umamaheswari; Surendra Singh
Journal:  Front Pharmacol       Date:  2018-10-22       Impact factor: 5.810

8.  Gene3D: Extensive prediction of globular domains in proteins.

Authors:  Tony E Lewis; Ian Sillitoe; Natalie Dawson; Su Datt Lam; Tristan Clarke; David Lee; Christine Orengo; Jonathan Lees
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971
  8 in total

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