Literature DB >> 35976422

Coumarin 6H-fused fluorescent probe for highly sensitive detection of coralyne using oligonucleotide-modified silver nanoparticles.

Hatice Müge Usta1, Mehrdad Forough1, Özgül Persil Çetinkol2.   

Abstract

In this study, a novel, rapid, and sensitive fluorescence sensing platform was developed for the detection of coralyne (COR) by the conjugation of coumarin 6H (C6H) fluorescent dye with oligonucleotide-modified silver nanoparticles [(dT)32-AgNPs]. In the presence of COR, a remarkable and rapid decrease in the fluorescence signal of the probe with a quenching efficiency of around 62% was observed. The quenching response of the system towards COR was possibly due to the displacement of thymidine-rich deoxyoligonucleotides by COR on the surface of AgNPs. The complementary experiments with an adenine-rich single strand as well as with two different secondary structures (i.e., duplex and triplex) revealed a favorable sequence specificity of the sensing platform. The influence of key parameters including the incubation time and temperature was evaluated and optimized to achieve the highest performance. The linear range of 10-183 nM with a correlation coefficient of R = 0.9982 and a limit of detection of 5.24 nM were obtained under the optimized conditions. The selectivity of the proposed probe towards COR was revealed by the evaluation of its response to other small molecules that have molecular structures similar to COR. Finally, the successful applicability of the system was shown with the obtained average recoveries in the range of 87.28-104.52% in human urine samples.
© 2022. Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Coralyne; Coumarin 6H; Fluorescent probe; Silver nanoparticles

Mesh:

Substances:

Year:  2022        PMID: 35976422     DOI: 10.1007/s00216-022-04282-2

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.478


  48 in total

1.  Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding.

Authors:  Ozgül Persil; Catherine T Santai; Swapan S Jain; Nicholas V Hud
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

2.  Investigations on the interaction of the phototoxic alkaloid coralyne with serum albumins.

Authors:  Asma Yasmeen Khan; Maidul Hossain; Gopinatha Suresh Kumar
Journal:  Chemosphere       Date:  2012-02-02       Impact factor: 7.086

3.  A label-free and colorimetric turn-on assay for coralyne based on coralyne-induced formation of peroxidase-mimicking split DNAzyme.

Authors:  Ting Hou; Xiuzhong Wang; Xiaojuan Liu; Shufeng Liu; Zongfeng Du; Feng Li
Journal:  Analyst       Date:  2013-07-19       Impact factor: 4.616

4.  Combining DNA-stabilized silver nanocluster synthesis with exonuclease III amplification allows label-free detection of coralyne.

Authors:  Cheng-Yu Lee; Shun-Wen Lin; Yi-Hsuan Wu; You-Zung Hsieh
Journal:  Anal Chim Acta       Date:  2018-08-18       Impact factor: 6.558

5.  Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne.

Authors:  Matjaz Polak; Nicholas V Hud
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

6.  Sequence and structural selectivity of nucleic acid binding ligands.

Authors:  J Ren; J B Chaires
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

7.  Synergistic effects of coralyne and paclitaxel on cell migration and proliferation of breast cancer cells lines.

Authors:  Seema Kumari; Anil Kumar Badana; G Murali Mohan; G Shailender Naik; RamaRao Malla
Journal:  Biomed Pharmacother       Date:  2017-05-02       Impact factor: 6.529

8.  Molecular recognition of nucleic acids: coralyne binds strongly to poly(A).

Authors:  Feifei Xing; Guangtao Song; Jinsong Ren; Jonathan B Chaires; Xiaogang Qu
Journal:  FEBS Lett       Date:  2005-09-12       Impact factor: 4.124

9.  Identification of topoisomerase I as the cytotoxic target of the protoberberine alkaloid coralyne.

Authors:  B Gatto; M M Sanders; C Yu; H Y Wu; D Makhey; E J LaVoie; L F Liu
Journal:  Cancer Res       Date:  1996-06-15       Impact factor: 12.701

10.  Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex.

Authors:  In Suk Joung; Ozgül Persil Cetinkol; Nicholas V Hud; Thomas E Cheatham
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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