| Literature DB >> 35974836 |
Mohcine Missioui1, Walid Guerrab1, Abdulsalam Alsubari2, Joel T Mague3, Youssef Ramli1.
Abstract
The asymmetric unit of the title compound, C8H7FN4O, consists of two independent mol-ecules differing in the orientation of the azido group. Each mol-ecule forms N-H⋯O hydrogen-bonded chains along along the c-axis direction with its symmetry-related counterparts and the chains are connected by C-F⋯π(ring), C=O⋯π(ring) and slipped π-stacking inter-actions. A Hirshfeld surface analysis of these inter-actions was performed. © Missioui et al. 2022.Entities:
Keywords: Hirshfeld surface; acetamide; azide; crystal structure; hydrogen bond
Year: 2022 PMID: 35974836 PMCID: PMC9361366 DOI: 10.1107/S2056989022006764
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit with labeling scheme and 50% probability ellipsoids. The C15=O2⋯Cg1 interaction is depicted by a dashed line.
Figure 2Overlay of the two molecules in the asymmetric unit. The yellow molecule contains O1 while the red one contains O2.
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C1–C6 and C9–C14 benzene rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1i | 0.86 | 2.17 | 2.921 (2) | 146 |
| N5—H5 | 0.86 | 2.13 | 2.885 (2) | 146 |
| C4—F1⋯ | 1.35 (1) | 3.76 (1) | 3.563 (2) | 72 (1) |
| C12—F2⋯ | 1.36 (1) | 3.98 (1) | 3.942 (2) | 79 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Perspective view of the chain structure with N—H⋯O hydrogen bonds and C15=O2⋯Cg1 interactions depicted, respectively, by violet and light-blue dashed lines. Non-interacting hydrogen atoms are omitted for clarity.
Figure 4Packing viewed along the c-axis direction showing the linking of chains via C—F⋯π(ring) (green dashed lines) and C15=O2⋯Cg1 (light-blue dashed lines) and slipped π-stacking (orange dashed lines) interactions. N—H⋯O hydrogen bonds and non-interacting hydrogen atoms are omitted for clarity.
Figure 5The (a) d norm and (b) shape-index surfaces for the molecule containing O1, and the (c) d norm and (d) shape-index surfaces for the molecule containing O2 together with the two closest molecules of each type.
Figure 6Fingerprint plots for the molecule containing O1 showing intermolecular interactions. (a) all; (b) N⋯H/H⋯N; (c) H⋯H; (d) O⋯H/H⋯O; (e) C⋯H/H⋯C; (f) F⋯H/H⋯F.
Figure 7Fingerprint plots for the molecule containing O2 showing intermolecular interactions. (a) all; (b) N⋯H/H⋯N; (c) H⋯H; (d) C⋯H/H⋯C; (e) F⋯H/H⋯F; (f) O⋯H/H⋯O.
Experimental details
| Crystal data | |
| Chemical formula | C8H7FN4O |
|
| 194.18 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 10.8398 (7), 19.0207 (11), 9.3307 (5) |
| β (°) | 112.378 (2) |
|
| 1778.93 (18) |
|
| 8 |
| Radiation type | Cu |
| μ (mm−1) | 1.00 |
| Crystal size (mm) | 0.47 × 0.25 × 0.15 |
| Data collection | |
| Diffractometer | Bruker D8 VENTURE PHOTON 100 CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.75, 0.87 |
| No. of measured, independent and observed [ | 12623, 3224, 2545 |
|
| 0.034 |
| (sin θ/λ)max (Å−1) | 0.603 |
| Refinement | |
|
| 0.053, 0.162, 1.06 |
| No. of reflections | 3224 |
| No. of parameters | 254 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.45, −0.24 |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT/5 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), DIAMOND (Brandenburg & Putz, 2012 ▸), and SHELXTL (Sheldrick, 2008 ▸).
| C8H7FN4O | |
| Monoclinic, | Cu |
| Cell parameters from 8481 reflections | |
| θ = 2.3–68.3° | |
| µ = 1.00 mm−1 | |
| β = 112.378 (2)° | |
| Thick plate, colourless | |
| 0.47 × 0.25 × 0.15 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 3224 independent reflections |
| Radiation source: INCOATEC IµS micro–focus source | 2545 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 68.5°, θmin = 4.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 12623 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3224 reflections | Δρmax = 0.45 e Å−3 |
| 254 parameters | Δρmin = −0.24 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: dual | Extinction coefficient: 0.0033 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. |
| F1 | 0.75450 (16) | 0.51934 (8) | 0.5506 (2) | 0.1053 (6) | |
| O1 | 0.37628 (16) | 0.27865 (8) | 0.11857 (16) | 0.0704 (5) | |
| N1 | 0.38854 (15) | 0.30447 (8) | 0.36111 (17) | 0.0528 (4) | |
| H1 | 0.357573 | 0.292390 | 0.429765 | 0.063* | |
| N2 | 0.23792 (19) | 0.15768 (11) | 0.1118 (2) | 0.0780 (6) | |
| N3 | 0.1406 (2) | 0.15796 (10) | −0.0097 (2) | 0.0673 (5) | |
| N4 | 0.0587 (3) | 0.15058 (17) | −0.1238 (3) | 0.1192 (11) | |
| C1 | 0.48107 (18) | 0.36020 (10) | 0.4020 (2) | 0.0494 (4) | |
| C2 | 0.5065 (2) | 0.40201 (11) | 0.2943 (2) | 0.0614 (5) | |
| H2 | 0.461604 | 0.394037 | 0.188729 | 0.074* | |
| C3 | 0.5994 (2) | 0.45573 (12) | 0.3457 (3) | 0.0725 (6) | |
| H3 | 0.617810 | 0.483972 | 0.274916 | 0.087* | |
| C4 | 0.6637 (2) | 0.46685 (11) | 0.5015 (3) | 0.0702 (6) | |
| C5 | 0.6383 (2) | 0.42787 (12) | 0.6092 (3) | 0.0675 (6) | |
| H5 | 0.681609 | 0.437309 | 0.714400 | 0.081* | |
| C6 | 0.54707 (19) | 0.37419 (11) | 0.5590 (2) | 0.0569 (5) | |
| H6 | 0.529166 | 0.346752 | 0.631306 | 0.068* | |
| C7 | 0.34277 (18) | 0.26790 (10) | 0.2280 (2) | 0.0517 (5) | |
| C8 | 0.2417 (2) | 0.21221 (12) | 0.2228 (3) | 0.0655 (6) | |
| H8A | 0.265262 | 0.191575 | 0.324847 | 0.079* | |
| H8B | 0.154166 | 0.233482 | 0.193244 | 0.079* | |
| F2 | 1.2344 (2) | 0.51818 (12) | 0.9845 (3) | 0.1438 (9) | |
| O2 | 0.86230 (17) | 0.27797 (9) | 0.55142 (18) | 0.0760 (5) | |
| N5 | 0.87105 (16) | 0.30220 (9) | 0.79296 (17) | 0.0546 (4) | |
| H5A | 0.839332 | 0.289670 | 0.860681 | 0.065* | |
| N6 | 0.6704 (2) | 0.18385 (13) | 0.4918 (2) | 0.0899 (7) | |
| N7 | 0.5847 (2) | 0.14001 (11) | 0.4654 (2) | 0.0670 (5) | |
| N8 | 0.5019 (2) | 0.10061 (15) | 0.4215 (3) | 0.0952 (8) | |
| C9 | 0.96341 (19) | 0.35814 (10) | 0.8354 (2) | 0.0536 (5) | |
| C10 | 0.9881 (2) | 0.40031 (12) | 0.7283 (3) | 0.0644 (5) | |
| H10 | 0.943298 | 0.392439 | 0.622692 | 0.077* | |
| C11 | 1.0801 (3) | 0.45421 (14) | 0.7798 (4) | 0.0827 (7) | |
| H11 | 1.098105 | 0.482845 | 0.709361 | 0.099* | |
| C12 | 1.1445 (3) | 0.46493 (15) | 0.9364 (4) | 0.0907 (8) | |
| C13 | 1.1195 (3) | 0.42528 (16) | 1.0435 (3) | 0.0904 (8) | |
| H13 | 1.162906 | 0.434404 | 1.148769 | 0.108* | |
| C14 | 1.0292 (2) | 0.37163 (13) | 0.9929 (3) | 0.0713 (6) | |
| H14 | 1.011492 | 0.343792 | 1.064795 | 0.086* | |
| C15 | 0.82697 (19) | 0.26628 (10) | 0.6592 (2) | 0.0539 (5) | |
| C16 | 0.7313 (2) | 0.20775 (12) | 0.6530 (2) | 0.0636 (5) | |
| H16A | 0.778421 | 0.169287 | 0.719587 | 0.076* | |
| H16B | 0.662987 | 0.224593 | 0.687969 | 0.076* |
| F1 | 0.0904 (10) | 0.0706 (9) | 0.1334 (15) | −0.0264 (8) | 0.0185 (10) | 0.0103 (9) |
| O1 | 0.0994 (11) | 0.0750 (10) | 0.0495 (8) | −0.0053 (8) | 0.0428 (8) | −0.0079 (7) |
| N1 | 0.0596 (9) | 0.0653 (10) | 0.0411 (8) | −0.0057 (7) | 0.0275 (7) | −0.0050 (7) |
| N2 | 0.0694 (11) | 0.0849 (14) | 0.0739 (13) | 0.0008 (10) | 0.0208 (10) | −0.0273 (10) |
| N3 | 0.0781 (12) | 0.0777 (12) | 0.0517 (11) | 0.0052 (9) | 0.0310 (10) | −0.0057 (8) |
| N4 | 0.1118 (19) | 0.160 (3) | 0.0615 (14) | 0.0438 (19) | 0.0055 (14) | −0.0281 (15) |
| C1 | 0.0507 (10) | 0.0542 (10) | 0.0484 (9) | 0.0043 (8) | 0.0247 (8) | −0.0003 (8) |
| C2 | 0.0684 (12) | 0.0663 (13) | 0.0534 (11) | 0.0030 (10) | 0.0276 (9) | 0.0079 (9) |
| C3 | 0.0763 (14) | 0.0614 (13) | 0.0873 (16) | 0.0025 (11) | 0.0396 (13) | 0.0198 (11) |
| C4 | 0.0589 (12) | 0.0535 (12) | 0.0897 (17) | −0.0022 (9) | 0.0186 (11) | 0.0052 (11) |
| C5 | 0.0646 (12) | 0.0637 (13) | 0.0652 (13) | −0.0030 (10) | 0.0146 (10) | −0.0036 (10) |
| C6 | 0.0621 (11) | 0.0621 (12) | 0.0484 (10) | −0.0026 (9) | 0.0231 (9) | −0.0008 (8) |
| C7 | 0.0568 (10) | 0.0593 (11) | 0.0429 (9) | 0.0079 (8) | 0.0234 (8) | −0.0033 (8) |
| C8 | 0.0651 (12) | 0.0739 (13) | 0.0620 (12) | −0.0080 (10) | 0.0292 (10) | −0.0187 (10) |
| F2 | 0.1302 (15) | 0.1254 (16) | 0.174 (2) | −0.0711 (13) | 0.0557 (15) | −0.0489 (15) |
| O2 | 0.1083 (13) | 0.0784 (10) | 0.0623 (9) | −0.0201 (9) | 0.0561 (9) | −0.0135 (7) |
| N5 | 0.0633 (10) | 0.0632 (10) | 0.0437 (8) | −0.0014 (7) | 0.0276 (7) | 0.0018 (7) |
| N6 | 0.1168 (17) | 0.1021 (17) | 0.0610 (12) | −0.0385 (14) | 0.0453 (12) | −0.0225 (11) |
| N7 | 0.0765 (12) | 0.0788 (12) | 0.0501 (9) | −0.0018 (11) | 0.0292 (9) | −0.0103 (9) |
| N8 | 0.0906 (15) | 0.123 (2) | 0.0712 (13) | −0.0231 (15) | 0.0300 (12) | −0.0307 (13) |
| C9 | 0.0530 (10) | 0.0571 (11) | 0.0538 (10) | 0.0049 (8) | 0.0239 (8) | −0.0017 (8) |
| C10 | 0.0691 (13) | 0.0655 (13) | 0.0654 (13) | −0.0018 (10) | 0.0334 (10) | 0.0007 (10) |
| C11 | 0.0871 (17) | 0.0708 (15) | 0.106 (2) | −0.0101 (13) | 0.0538 (16) | −0.0003 (14) |
| C12 | 0.0779 (16) | 0.0806 (18) | 0.112 (2) | −0.0217 (13) | 0.0351 (16) | −0.0251 (16) |
| C13 | 0.0863 (17) | 0.096 (2) | 0.0774 (17) | −0.0134 (15) | 0.0181 (14) | −0.0200 (15) |
| C14 | 0.0750 (14) | 0.0762 (15) | 0.0578 (12) | −0.0036 (11) | 0.0201 (10) | −0.0046 (11) |
| C15 | 0.0615 (11) | 0.0580 (11) | 0.0472 (10) | 0.0029 (8) | 0.0262 (9) | 0.0004 (8) |
| C16 | 0.0717 (13) | 0.0722 (13) | 0.0502 (11) | −0.0077 (10) | 0.0270 (9) | −0.0008 (9) |
| F1—C4 | 1.353 (3) | F2—C12 | 1.358 (3) |
| O1—C7 | 1.224 (2) | O2—C15 | 1.225 (2) |
| N1—C7 | 1.343 (2) | N5—C15 | 1.341 (2) |
| N1—C1 | 1.409 (2) | N5—C9 | 1.411 (3) |
| N1—H1 | 0.8600 | N5—H5A | 0.8600 |
| N2—N3 | 1.220 (3) | N6—N7 | 1.202 (3) |
| N2—C8 | 1.455 (3) | N6—C16 | 1.465 (3) |
| N3—N4 | 1.105 (3) | N7—N8 | 1.120 (3) |
| C1—C2 | 1.389 (3) | C9—C10 | 1.385 (3) |
| C1—C6 | 1.390 (3) | C9—C14 | 1.391 (3) |
| C2—C3 | 1.386 (3) | C10—C11 | 1.382 (3) |
| C2—H2 | 0.9300 | C10—H10 | 0.9300 |
| C3—C4 | 1.368 (4) | C11—C12 | 1.374 (4) |
| C3—H3 | 0.9300 | C11—H11 | 0.9300 |
| C4—C5 | 1.359 (3) | C12—C13 | 1.358 (4) |
| C5—C6 | 1.374 (3) | C13—C14 | 1.368 (4) |
| C5—H5 | 0.9300 | C13—H13 | 0.9300 |
| C6—H6 | 0.9300 | C14—H14 | 0.9300 |
| C7—C8 | 1.511 (3) | C15—C16 | 1.508 (3) |
| C8—H8A | 0.9700 | C16—H16A | 0.9700 |
| C8—H8B | 0.9700 | C16—H16B | 0.9700 |
| C7—N1—C1 | 127.90 (16) | C15—N5—C9 | 127.53 (16) |
| C7—N1—H1 | 116.0 | C15—N5—H5A | 116.2 |
| C1—N1—H1 | 116.0 | C9—N5—H5A | 116.2 |
| N3—N2—C8 | 116.02 (19) | N7—N6—C16 | 115.87 (19) |
| N4—N3—N2 | 171.2 (3) | N8—N7—N6 | 171.2 (2) |
| C2—C1—C6 | 119.27 (18) | C10—C9—C14 | 119.6 (2) |
| C2—C1—N1 | 123.51 (17) | C10—C9—N5 | 123.08 (18) |
| C6—C1—N1 | 117.20 (17) | C14—C9—N5 | 117.35 (18) |
| C3—C2—C1 | 119.3 (2) | C11—C10—C9 | 119.4 (2) |
| C3—C2—H2 | 120.3 | C11—C10—H10 | 120.3 |
| C1—C2—H2 | 120.3 | C9—C10—H10 | 120.3 |
| C4—C3—C2 | 119.4 (2) | C12—C11—C10 | 119.1 (3) |
| C4—C3—H3 | 120.3 | C12—C11—H11 | 120.4 |
| C2—C3—H3 | 120.3 | C10—C11—H11 | 120.4 |
| F1—C4—C5 | 118.5 (2) | C13—C12—F2 | 119.4 (3) |
| F1—C4—C3 | 119.0 (2) | C13—C12—C11 | 122.5 (2) |
| C5—C4—C3 | 122.4 (2) | F2—C12—C11 | 118.2 (3) |
| C4—C5—C6 | 118.4 (2) | C12—C13—C14 | 118.5 (3) |
| C4—C5—H5 | 120.8 | C12—C13—H13 | 120.7 |
| C6—C5—H5 | 120.8 | C14—C13—H13 | 120.7 |
| C5—C6—C1 | 121.11 (19) | C13—C14—C9 | 120.9 (2) |
| C5—C6—H6 | 119.4 | C13—C14—H14 | 119.6 |
| C1—C6—H6 | 119.4 | C9—C14—H14 | 119.6 |
| O1—C7—N1 | 124.23 (19) | O2—C15—N5 | 124.02 (19) |
| O1—C7—C8 | 122.15 (17) | O2—C15—C16 | 121.86 (18) |
| N1—C7—C8 | 113.61 (16) | N5—C15—C16 | 114.10 (16) |
| N2—C8—C7 | 110.25 (17) | N6—C16—C15 | 107.63 (17) |
| N2—C8—H8A | 109.6 | N6—C16—H16A | 110.2 |
| C7—C8—H8A | 109.6 | C15—C16—H16A | 110.2 |
| N2—C8—H8B | 109.6 | N6—C16—H16B | 110.2 |
| C7—C8—H8B | 109.6 | C15—C16—H16B | 110.2 |
| H8A—C8—H8B | 108.1 | H16A—C16—H16B | 108.5 |
| C7—N1—C1—C2 | 22.8 (3) | C15—N5—C9—C10 | 23.2 (3) |
| C7—N1—C1—C6 | −158.76 (19) | C15—N5—C9—C14 | −158.3 (2) |
| C6—C1—C2—C3 | 1.5 (3) | C14—C9—C10—C11 | 1.4 (3) |
| N1—C1—C2—C3 | 179.95 (18) | N5—C9—C10—C11 | 179.8 (2) |
| C1—C2—C3—C4 | −0.4 (3) | C9—C10—C11—C12 | −0.3 (4) |
| C2—C3—C4—F1 | 179.9 (2) | C10—C11—C12—C13 | −1.2 (5) |
| C2—C3—C4—C5 | −1.3 (4) | C10—C11—C12—F2 | 180.0 (2) |
| F1—C4—C5—C6 | −179.38 (19) | F2—C12—C13—C14 | −179.6 (3) |
| C3—C4—C5—C6 | 1.8 (4) | C11—C12—C13—C14 | 1.6 (5) |
| C4—C5—C6—C1 | −0.6 (3) | C12—C13—C14—C9 | −0.5 (4) |
| C2—C1—C6—C5 | −1.0 (3) | C10—C9—C14—C13 | −1.0 (4) |
| N1—C1—C6—C5 | −179.57 (18) | N5—C9—C14—C13 | −179.5 (2) |
| C1—N1—C7—O1 | −0.3 (3) | C9—N5—C15—O2 | −0.3 (3) |
| C1—N1—C7—C8 | −178.95 (18) | C9—N5—C15—C16 | 178.13 (18) |
| N3—N2—C8—C7 | −106.1 (2) | N7—N6—C16—C15 | −175.4 (2) |
| O1—C7—C8—N2 | 24.7 (3) | O2—C15—C16—N6 | −13.6 (3) |
| N1—C7—C8—N2 | −156.63 (18) | N5—C15—C16—N6 | 168.00 (19) |
| H··· | ||||
| N1—H1···O1i | 0.86 | 2.17 | 2.921 (2) | 146 |
| N5—H5 | 0.86 | 2.13 | 2.885 (2) | 146 |
| C4—F1··· | 1.35 (1) | 3.76 (1) | 3.563 (2) | 72 (1) |
| C12—F2··· | 1.36 (1) | 3.98 (1) | 3.942 (2) | 79 (1) |