Literature DB >> 35972475

Perfecting antigen prediction.

David Hoyos1, Benjamin D Greenbaum1,2.   

Abstract

Advances in genomics and precision measurement have continued to demonstrate the importance of the immune system across many disease types. At the heart of many emerging approaches to leverage these insights for precision immunotherapies is the computational antigen prediction problem. We propose a threefold approach to improving antigen predictions: further defining the geometry of the antigen landscape, incorporating the coupling of antigen recognition to other cellular processes, and diversifying the training sets used for models that predict immunogenicity.
© 2022 Hoyos and Greenbaum.

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Year:  2022        PMID: 35972475      PMCID: PMC9386507          DOI: 10.1084/jem.20220846

Source DB:  PubMed          Journal:  J Exp Med        ISSN: 0022-1007            Impact factor:   17.579


  10 in total

Review 1.  Proteolysis, proteasomes and antigen presentation.

Authors:  A L Goldberg; K L Rock
Journal:  Nature       Date:  1992-06-04       Impact factor: 49.962

Review 2.  Influenza vaccines for the future.

Authors:  Linda C Lambert; Anthony S Fauci
Journal:  N Engl J Med       Date:  2010-11-18       Impact factor: 91.245

3.  Gapped sequence alignment using artificial neural networks: application to the MHC class I system.

Authors:  Massimo Andreatta; Morten Nielsen
Journal:  Bioinformatics       Date:  2015-10-29       Impact factor: 6.937

4.  Six-locus high resolution HLA haplotype frequencies derived from mixed-resolution DNA typing for the entire US donor registry.

Authors:  Loren Gragert; Abeer Madbouly; John Freeman; Martin Maiers
Journal:  Hum Immunol       Date:  2013-06-24       Impact factor: 2.850

Review 5.  Using T Cell Receptor Repertoires to Understand the Principles of Adaptive Immune Recognition.

Authors:  Philip Bradley; Paul G Thomas
Journal:  Annu Rev Immunol       Date:  2019-01-30       Impact factor: 28.527

6.  Cancer survival among US whites and minorities: a SEER (Surveillance, Epidemiology, and End Results) Program population-based study.

Authors:  Limin X Clegg; Frederick P Li; Benjamin F Hankey; Kenneth Chu; Brenda K Edwards
Journal:  Arch Intern Med       Date:  2002-09-23

7.  Guidelines for the evaluation of immune therapy activity in solid tumors: immune-related response criteria.

Authors:  Jedd D Wolchok; Axel Hoos; Steven O'Day; Jeffrey S Weber; Omid Hamid; Celeste Lebbé; Michele Maio; Michael Binder; Oliver Bohnsack; Geoffrey Nichol; Rachel Humphrey; F Stephen Hodi
Journal:  Clin Cancer Res       Date:  2009-11-24       Impact factor: 12.531

Review 8.  Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology.

Authors:  Dylan H Morris; Katelyn M Gostic; Simone Pompei; Trevor Bedford; Marta Łuksza; Richard A Neher; Bryan T Grenfell; Michael Lässig; John W McCauley
Journal:  Trends Microbiol       Date:  2017-10-30       Impact factor: 17.079

Review 9.  Current research status of HLA in immune-related diseases.

Authors:  Bingnan Liu; Yuanyuan Shao; Rong Fu
Journal:  Immun Inflamm Dis       Date:  2021-03-03

10.  Systematic pan-cancer analysis of tumour purity.

Authors:  Dvir Aran; Marina Sirota; Atul J Butte
Journal:  Nat Commun       Date:  2015-12-04       Impact factor: 14.919

  10 in total

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