Literature DB >> 35963241

A unicellular walker controlled by a microtubule-based finite-state machine.

Ben T Larson1, Jack Garbus2, Jordan B Pollack2, Wallace F Marshall3.   

Abstract

Cells are complex biochemical systems whose behaviors emerge from interactions among myriad molecular components. Computation is often invoked as a general framework for navigating this cellular complexity. However, it is unclear how cells might embody computational processes such that the theories of computation, including finite-state machine models, could be productively applied. Here, we demonstrate finite-state-machine-like processing embodied in cells using the walking behavior of Euplotes eurystomus, a ciliate that walks across surfaces using fourteen motile appendages (cirri). We found that cellular walking entails regulated transitions among a discrete set of gait states. The set of observed transitions decomposes into a small group of high-probability, temporally irreversible transitions and a large group of low-probability, time-symmetric transitions, thus revealing stereotypy in the sequential patterns of state transitions. Simulations and experiments suggest that the sequential logic of the gait is functionally important. Taken together, these findings implicate a finite-state-machine-like process. Cirri are connected by microtubule bundles (fibers), and we found that the dynamics of cirri involved in different state transitions are associated with the structure of the fiber system. Perturbative experiments revealed that the fibers mediate gait coordination, suggesting a mechanical basis of gait control.
Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  broken detailed balance; cell motility; cellular behavior; cilia; ciliate; computation; decision-making; gait coordination; information processing; tubulin

Mesh:

Year:  2022        PMID: 35963241      PMCID: PMC9474717          DOI: 10.1016/j.cub.2022.07.034

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.900


  43 in total

1.  Chlamydomonas swims with two "gears" in a eukaryotic version of run-and-tumble locomotion.

Authors:  Marco Polin; Idan Tuval; Knut Drescher; J P Gollub; Raymond E Goldstein
Journal:  Science       Date:  2009-07-24       Impact factor: 47.728

2.  Time Irreversibility and Criticality in the Motility of a Flagellate Microorganism.

Authors:  Kirsty Y Wan; Raymond E Goldstein
Journal:  Phys Rev Lett       Date:  2018-08-03       Impact factor: 9.161

3.  Dynamics of the cytoskeleton during morphogenesis in the ciliate Euplotes I. Basal bodies related microtubular system.

Authors:  A Fleury
Journal:  Eur J Protistol       Date:  2011-11-02       Impact factor: 3.020

4.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

5.  Broken detailed balance at mesoscopic scales in active biological systems.

Authors:  Christopher Battle; Chase P Broedersz; Nikta Fakhri; Veikko F Geyer; Jonathon Howard; Christoph F Schmidt; Fred C MacKintosh
Journal:  Science       Date:  2016-04-29       Impact factor: 47.728

6.  Coupled Active Systems Encode an Emergent Hunting Behavior in the Unicellular Predator Lacrymaria olor.

Authors:  Scott M Coyle; Eliott M Flaum; Hongquan Li; Deepak Krishnamurthy; Manu Prakash
Journal:  Curr Biol       Date:  2019-10-31       Impact factor: 10.834

7.  TrakEM2 software for neural circuit reconstruction.

Authors:  Albert Cardona; Stephan Saalfeld; Johannes Schindelin; Ignacio Arganda-Carreras; Stephan Preibisch; Mark Longair; Pavel Tomancak; Volker Hartenstein; Rodney J Douglas
Journal:  PLoS One       Date:  2012-06-19       Impact factor: 3.240

8.  Unpredictability of escape trajectory explains predator evasion ability and microhabitat preference of desert rodents.

Authors:  Talia Y Moore; Kimberly L Cooper; Andrew A Biewener; Ramanarayan Vasudevan
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

9.  Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy.

Authors:  Derek Greenfield; Ann L McEvoy; Hari Shroff; Gavin E Crooks; Ned S Wingreen; Eric Betzig; Jan Liphardt
Journal:  PLoS Biol       Date:  2009-06-23       Impact factor: 8.029

Review 10.  Nonnegative matrix factorization: an analytical and interpretive tool in computational biology.

Authors:  Karthik Devarajan
Journal:  PLoS Comput Biol       Date:  2008-07-25       Impact factor: 4.475

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