Literature DB >> 35958044

Diatoms.org: supporting taxonomists, connecting communities.

Sarah A Spaulding1, Marina G Potapova2, Ian W Bishop3, Sylvia S Lee4, Tim S Gasperak5, Elena Jovanoska6, Paula C Furey7, Mark B Edlund8.   

Abstract

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve, because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. First, literature is often inaccessible because of cost, or its location in journals that are not widely circulated. Second, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notice of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification, but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an "extended electronic book" has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org, document key elements of the project, examine ongoing challenges, and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Entities:  

Keywords:  North America; content curation community; online flora; taxonomic consistency; website

Year:  2022        PMID: 35958044      PMCID: PMC9359083          DOI: 10.1080/0269249X.2021.2006790

Source DB:  PubMed          Journal:  Diatom Res        ISSN: 0269-249X            Impact factor:   1.386


  18 in total

1.  Life cycle size dynamics in Didymosphenia geminata (Bacillariophyceae).

Authors:  Ian W Bishop; Sarah A Spaulding
Journal:  J Phycol       Date:  2017-04-04       Impact factor: 2.923

2.  Integrating biodiversity distribution knowledge: toward a global map of life.

Authors:  Walter Jetz; Jana M McPherson; Robert P Guralnick
Journal:  Trends Ecol Evol       Date:  2011-10-21       Impact factor: 17.712

3.  Reduction of taxonomic bias in diatom species data.

Authors:  Meredith A Tyree; Ian W Bishop; Charles P Hawkins; Richard Mitchell; Sarah A Spaulding
Journal:  Limnol Oceanogr Methods       Date:  2020-02-13       Impact factor: 2.634

4.  Taxonomic harmonization may reveal a stronger association between diatom assemblages and total phosphorus in large datasets.

Authors:  Sylvia S Lee; Ian W Bishop; Sarah A Spaulding; Richard M Mitchell; Lester L Yuan
Journal:  Ecol Indic       Date:  2019-07-01       Impact factor: 4.958

5.  Resources and Practices to Improve Diatom Data Quality.

Authors:  Janice Alers-García; Sylvia S Lee; Sarah A Spaulding
Journal:  Limnol Oceanogr Bull       Date:  2021-03-26

6.  Global priorities for an effective information basis of biodiversity distributions.

Authors:  Carsten Meyer; Holger Kreft; Robert Guralnick; Walter Jetz
Journal:  Nat Commun       Date:  2015-09-08       Impact factor: 14.919

7.  Trends in access of plant biodiversity data revealed by Google Analytics.

Authors:  Timothy Mark Jones; David G Baxter; Gregor Hagedorn; Ben Legler; Edward Gilbert; Kevin Thiele; Yalma Vargas-Rodriguez; Lowell E Urbatsch
Journal:  Biodivers Data J       Date:  2014-11-11

8.  Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.

Authors:  Lorena Endara; Hong Cui; J Gordon Burleigh
Journal:  Appl Plant Sci       Date:  2018-03-31       Impact factor: 1.936

9.  The tempo and mode of the taxonomic correction process: How taxonomists have corrected and recorrected North American bird species over the last 127 years.

Authors:  Gaurav Vaidya; Denis Lepage; Robert Guralnick
Journal:  PLoS One       Date:  2018-04-19       Impact factor: 3.240

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  1 in total

1.  A web-based tool for assessing the condition of benthic diatom assemblages in streams and rivers of the conterminous United States.

Authors:  Daren M Carlisle; Sarah A Spaulding; Meredith A Tyree; Nicholas O Schulte; Sylvia S Lee; Richard M Mitchell; Amina A Pollard
Journal:  Ecol Indic       Date:  2022-02       Impact factor: 6.263

  1 in total

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