Literature DB >> 34335117

Resources and Practices to Improve Diatom Data Quality.

Janice Alers-García1, Sylvia S Lee2, Sarah A Spaulding3.   

Abstract

Environmental programs in the United States face technical challenges that inhibit the ability to use diatoms in water quality monitoring and assessment projects. Specifically, inconsistent taxonomy can obscure diatom responses to environmental variables. Problems are the result of (1) limited access to a common set of taxonomic references, especially those that are geographically relevant, (2) inefficient enumeration protocols, (3) lack of complete and transparent documentation of taxa, and (4) limited opportunities for continued education, training, and knowledge sharing. However, robust resources and practices are available to improve diatom data quality and interpretation. Several resources improve diatom data quality, including a publicly accessible taxonomic reference (diatoms.org) and recommended practices. These practices include adoption of the voucher floras, random sample assignment, replicate microscope slides, and improved quality control. Finally, the Society for Freshwater Science Diatom Taxonomic Certification Committee is developing educational materials and certification exams to support practitioner training and to increase the diatom research knowledge base. The resources and practices in this article are broadly applicable to improving basic and applied research on diatoms worldwide.

Entities:  

Year:  2021        PMID: 34335117      PMCID: PMC8318116          DOI: 10.1002/lob.10433

Source DB:  PubMed          Journal:  Limnol Oceanogr Bull        ISSN: 1539-607X


  4 in total

1.  Reduction of taxonomic bias in diatom species data.

Authors:  Meredith A Tyree; Ian W Bishop; Charles P Hawkins; Richard Mitchell; Sarah A Spaulding
Journal:  Limnol Oceanogr Methods       Date:  2020-02-13       Impact factor: 2.634

2.  Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization.

Authors:  Bonnie Bailet; Laure Apothéloz-Perret-Gentil; Ana Baričević; Teofana Chonova; Alain Franc; Jean-Marc Frigerio; Martyn Kelly; Demetrio Mora; Martin Pfannkuchen; Sebastian Proft; Mathieu Ramon; Valentin Vasselon; Jonas Zimmermann; Maria Kahlert
Journal:  Sci Total Environ       Date:  2020-07-18       Impact factor: 7.963

3.  Taxonomic harmonization may reveal a stronger association between diatom assemblages and total phosphorus in large datasets.

Authors:  Sylvia S Lee; Ian W Bishop; Sarah A Spaulding; Richard M Mitchell; Lester L Yuan
Journal:  Ecol Indic       Date:  2019-07-01       Impact factor: 4.958

Review 4.  Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive.

Authors:  Daniel Hering; Angel Borja; J Iwan Jones; Didier Pont; Pieter Boets; Agnes Bouchez; Kat Bruce; Stina Drakare; Bernd Hänfling; Maria Kahlert; Florian Leese; Kristian Meissner; Patricia Mergen; Yorick Reyjol; Pedro Segurado; Alfried Vogler; Martyn Kelly
Journal:  Water Res       Date:  2018-03-20       Impact factor: 11.236

  4 in total
  2 in total

1.  Genus-level, trait-based multimetric diatom indices for assessing the ecological condition of rivers and streams across the conterminous United States.

Authors:  Luisa Riato; Ryan A Hill; Alan T Herlihy; David V Peck; Philip R Kaufmann; John L Stoddard; Steven G Paulsen
Journal:  Ecol Indic       Date:  2022-08       Impact factor: 6.263

2.  Diatoms.org: supporting taxonomists, connecting communities.

Authors:  Sarah A Spaulding; Marina G Potapova; Ian W Bishop; Sylvia S Lee; Tim S Gasperak; Elena Jovanoska; Paula C Furey; Mark B Edlund
Journal:  Diatom Res       Date:  2022-01-11       Impact factor: 1.386

  2 in total

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