Literature DB >> 35958029

Centered Partition Processes: Informative Priors for Clustering (with Discussion).

Sally Paganin1, Amy H Herring2, Andrew F Olshan3, David B Dunson2.   

Abstract

There is a very rich literature proposing Bayesian approaches for clustering starting with a prior probability distribution on partitions. Most approaches assume exchangeability, leading to simple representations in terms of Exchangeable Partition Probability Functions (EPPF). Gibbs-type priors encompass a broad class of such cases, including Dirichlet and Pitman-Yor processes. Even though there have been some proposals to relax the exchangeability assumption, allowing covariate-dependence and partial exchangeability, limited consideration has been given on how to include concrete prior knowledge on the partition. For example, we are motivated by an epidemiological application, in which we wish to cluster birth defects into groups and we have prior knowledge of an initial clustering provided by experts. As a general approach for including such prior knowledge, we propose a Centered Partition (CP) process that modifies the EPPF to favor partitions close to an initial one. Some properties of the CP prior are described, a general algorithm for posterior computation is developed, and we illustrate the methodology through simulation examples and an application to the motivating epidemiology study of birth defects.

Entities:  

Keywords:  Bayesian clustering; Bayesian nonparametrics; Dirichlet Process; centered process; exchangeable probability partition function; mixture model; product partition model

Year:  2020        PMID: 35958029      PMCID: PMC9364237          DOI: 10.1214/20-BA1197

Source DB:  PubMed          Journal:  Bayesian Anal        ISSN: 1931-6690            Impact factor:   3.396


  17 in total

1.  Prepregnancy obesity as a risk factor for structural birth defects.

Authors:  D Kim Waller; Gary M Shaw; Sonja A Rasmussen; Charlotte A Hobbs; Mark A Canfield; Anna-Maria Siega-Riz; M Shayne Gallaway; Adolfo Correa
Journal:  Arch Pediatr Adolesc Med       Date:  2007-08

2.  Bayesian hierarchical functional data analysis via contaminated informative priors.

Authors:  Bruno Scarpa; David B Dunson
Journal:  Biometrics       Date:  2009-01-23       Impact factor: 2.571

3.  A Product Partition Model With Regression on Covariates.

Authors:  Peter Müller; Fernando Quintana; Gary L Rosner
Journal:  J Comput Graph Stat       Date:  2011-03-01       Impact factor: 2.302

4.  The National Birth Defects Prevention Study.

Authors:  P W Yoon; S A Rasmussen; M C Lynberg; C A Moore; M Anderka; S L Carmichael; P Costa; C Druschel; C A Hobbs; P A Romitti; P H Langlois; L D Edmonds
Journal:  Public Health Rep       Date:  2001       Impact factor: 2.792

5.  Data augmentation for models based on rejection sampling.

Authors:  Vinayak Rao; Lizhen Lin; David B Dunson
Journal:  Biometrika       Date:  2016-05-06       Impact factor: 2.445

6.  Cardiovascular malformations: changes in prevalence and birth status, 1972-1990.

Authors:  A E Lin; A H Herring; K S Amstutz; M N Westgate; R V Lacro; M Al-Jufan; L Ryan; L B Holmes
Journal:  Am J Med Genet       Date:  1999-05-21

7.  Guidelines for case classification for the National Birth Defects Prevention Study.

Authors:  Sonja A Rasmussen; Richard S Olney; Lewis B Holmes; Angela E Lin; Kim M Keppler-Noreuil; Cynthia A Moore
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2003-03

8.  Centered Partition Processes: Informative Priors for Clustering (with Discussion).

Authors:  Sally Paganin; Amy H Herring; Andrew F Olshan; David B Dunson
Journal:  Bayesian Anal       Date:  2020-02-13       Impact factor: 3.396

9.  Diabetes mellitus and birth defects.

Authors:  Adolfo Correa; Suzanne M Gilboa; Lilah M Besser; Lorenzo D Botto; Cynthia A Moore; Charlotte A Hobbs; Mario A Cleves; Tiffany J Riehle-Colarusso; D Kim Waller; E Albert Reece
Journal:  Am J Obstet Gynecol       Date:  2008-07-31       Impact factor: 8.661

10.  Bayesian semiparametric multiple shrinkage.

Authors:  Richard F Maclehose; David B Dunson
Journal:  Biometrics       Date:  2009-06-08       Impact factor: 2.571

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  1 in total

1.  Centered Partition Processes: Informative Priors for Clustering (with Discussion).

Authors:  Sally Paganin; Amy H Herring; Andrew F Olshan; David B Dunson
Journal:  Bayesian Anal       Date:  2020-02-13       Impact factor: 3.396

  1 in total

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