Literature DB >> 35955641

Objective Evaluation of Clinical Actionability for Genes Involved in Myopathies: 63 Genes with a Medical Value for Patient Care.

Maude Vecten1,2, Emmanuelle Pion3,4, Marc Bartoli2, Raul Juntas Morales5, Damien Sternberg6, John Rendu7, Tanya Stojkovic8,9, Cécile Acquaviva Bourdain10, Corinne Métay11, Isabelle Richard12, Mathieu Cerino2,13, Mathieu Milh2,14, Emmanuelle Campana-Salort2, Svetlana Gorokhova2,15, Nicolas Levy2,15, Xénia Latypova7, Gisèle Bonne9, Valérie Biancalana16, François Petit17, Annamaria Molon4, Aurélien Perrin3,18, Pascal Laforêt19, Shahram Attarian20, Martin Krahn2,15, Mireille Cossée3,18.   

Abstract

The implementation of high-throughput diagnostic sequencing has led to the generation of large amounts of mutational data, making their interpretation more complex and responsible for long delays. It has been important to prioritize certain analyses, particularly those of "actionable" genes in diagnostic situations, involving specific treatment and/or management. In our project, we carried out an objective assessment of the clinical actionability of genes involved in myopathies, for which only few data obtained methodologically exist to date. Using the ClinGen Actionability criteria, we scored the clinical actionability of all 199 genes implicated in myopathies published by FILNEMUS for the "National French consensus on gene Lists for the diagnosis of myopathies using next generation sequencing". We objectified that 63 myopathy genes were actionable with the currently available data. Among the 36 myopathy genes with the highest actionability scores, only 8 had been scored to date by ClinGen. The data obtained through these methodological tools are an important resource for strategic choices in diagnostic approaches and the management of genetic myopathies. The clinical actionability of genes has to be considered as an evolving concept, in relation to progresses in disease knowledge and therapeutic approaches.

Entities:  

Keywords:  actionability; diagnostic; genetics; myopathy; next generation sequencing

Mesh:

Year:  2022        PMID: 35955641      PMCID: PMC9369031          DOI: 10.3390/ijms23158506

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   6.208


1. Introduction

High-throughput sequencing revolutionized the possibilities of genetic analysis by allowing the simultaneous mutational screening of several genes, progressively extending to all the genes through exome and genome sequencing [1]. These technologies lead to the potential for the recognition of secondary findings unrelated to the indication for ordering the sequencing, but of medical value for patient care [2]. The concept of “actionable genes” has emerged in this context for diagnostic purposes. In 2013, the ACMG drafted initial recommendations on the principle of actionability and published a list of 59 actionable genes [2]. More recently, the ClinGen Actionability Working Group (AWG) proposed a semi-quantitative metric scoring to assess the clinical actionability of genes through four indicators: severity of disease, penetrance/likelihood of disease, effectiveness of intervention, and nature of intervention (https://www.clinicalgenome.org/site/assets/files/2180/actionability_sq_metric.png (accessed on 10 February 2020)) [3], combined with the indication of the level of evidence, to determine best practices regarding secondary findings [4]. Across these topics, the ClinGen AWG scored 213 outcome-intervention pairs from 127 genes associated with 78 disorders [4]. This semi-quantitative measure is set to evolve thanks to the contribution of the entire international community and should be considered as a starting point in the standardization of clinical actionability. In France, FILNEMUS was the first to publish the “gene-disease” correlations for 199 genes implicated in 223 myopathies [5] using the procedure published by the ClinGen Clinical Validity framework, in order to simplify the molecular diagnosis of myopathies [6]. Despite this, the use of next generation sequencing is faced with results delays, which are problematic for genes with medical value for patient care. ClinGen AWG listed some myopathy genes as actionable, such as the GAA gene responsible for Pompe disease, for which the prognosis may improve if the patient is treated quickly especially in its infantile form. However, actionability has not been assessed for all myopathy genes. Based on the ClinGen AWG recommendations, we carried out a clinical actionability objective assessment of the 199 genes implicated in 223 myopathies reported on the FILNEMUS list.

2. Results

We used the semi-quantitative actionability metric established by ClinGen [3,4] to score the clinical actionability of 199 genes implicated in 223 myopathies published by FILNEMUS [5]. We choose to offer an overall score for each gene-associated disorder, to mark the most severe phenotype and not each symptom (cardiac involvement, muscle damage, etc.). The four indicators, severity of disease, penetrance/likelihood of disease, effectiveness of specific intervention, and nature of intervention, were each scored from 0 to 3, from a low level to a high level of actionability [3]. For example, the score severity is 0 if the disease has minimal health impact or no morbidity and 3 if there is sudden death or inevitable death; the score penetrance is 0 if <1% chance or unknown, 3 if >40% chance; effectiveness of specific intervention is 0 if ineffective/no intervention, 3 if highly effective; nature of intervention is 0 if high risk/poorly acceptable/intensive or no intervention, and 3 if low risk/medically acceptable/low intensity intervention [3,4]. All scores have been reviewed by the French FILNEMUS expert-network (clinicians and geneticists). The 223 myopathy genes/disorders were scored from 1 to 12 (Supplemental Material S1). More than 45% of the scores were distributed between 4 and 6, while the scores for genes/disorders of the ClinGen AWG genes list were between 5 and 12, with >50% of them greater than or equal to 9 (Figure 1a).
Figure 1

Actionability scores for myopathy genes and ACMG genes.

The four indicators of actionability were severity of disease, penetrance/likelihood of disease, effectiveness of specific intervention, and nature of intervention. These indicators were each scored from 0 to 3, from a low level to a high level of actionability [3]. a/Total scores for the 223 myopathy genes/disorders (from the 199 genes reported by FILNEMUS [5]) and for the 213 ClinGen AWG genes/outcome-intervention pairs (from the 127 genes scored by ClinGen AWG [4]). b/Distribution of the four indicators for the 223 myopathy genes/disorders. c/Distribution of the four indicators for the 213 ClinGen AWG genes/outcome-intervention pairs. d/Distribution of the four indicators for the 43 myopathy genes/disorders (36 genes) with a global score ≥ 9. e/Distribution of the four indicators for the 125 ClinGen AWG genes/outcome-intervention pairs (111 genes) with a global score ≥ 9. We evaluated the scores distribution of the four indicators for the myopathy genes/disorders (Figure 1b). Concerning the severity indicator: 43% had very high mortality rates (score 3), 29% had moderate severity (score 2), and 28% low severity (score 1). For the disease penetrance indicator (likelihood): the information was available for only 27% of the myopathy genes/disorders, leading to an artificial score of 0 for 73% of them. For the effectiveness of intervention: 36% were highly or moderate effective (score ≥ 2). The nature of intervention was evenly distributed between the different scores, with a great or high risk (scores 0 and 1) in 44% of cases. By filtering the two care indicators, effectiveness of specific intervention with a score ≥ 2 and nature of intervention ≥ 1, we retained 63 myopathy genes corresponding to 78 disorders that could be actionable on their management (Table 1). Final scores of actionability of these genes/disorders were between 5 and 12, with the majority ≥ 9 (43/78, 55%). The intervention included either the availability of drugs or a specific cardiac management (defibrillator/pacemaker).
Table 1

The 63 myopathy genes with a medical value for patient care. The 63 genes of myopathies were selected based on effectiveness of the treatment with a score ≥ 2 and nature of the intervention ≥ 1. The global score indicated also takes into account the scores of severity and penetrance/likelihood. Genes with a global score ≥ 9 are highlighted in grey. LGMD old/new names according to the LGMD nomenclature are indicated.

GeneDisorderInterventionEffectivenessNature of InterventionGlobal ScoreClingen Scoring
ACAD9 Mitochondrial complex I deficiency due to ACAD9 deficiencyRiboflavine226
ACADVL Acyl-CoA dehydrogenase (very long chain) deficiency (VLCAD deficiency)Hygienic and dietetic measures +/− triheptanoin acid/Medium cahin triglyceride/N-acetylcystein Prevention of rhabdomyolysis219
AGL Glycogen storage disease type IIIa-GSD IIIaGlycogen storage disease type IIIb-GSD IIIb Glycogen storage disease type IIIc-GSD IIIc Glycogen storage disease type IIId-GSD IIIdHygienic and dietetic measures with specific diet Vital disease screening because healthy measures can prevent hypoglycaemia and cardiac complication226
AGRN Congenital myasthenic syndrome 8, with pre- and postsynaptic defectsSalbutamol, ephedrine3312
AMPD1 Myopathy due to myoadenylate deaminase deficiencySymptomatic treatment/D-ribose214
BAG3 Myofibrillar myopathy 6Symptomatic treatment: Implantable Cardioverter-Defibrillator (ICD)/ventilation23119 AD myopathy myofibrillar (adult)
Susceptibility to malignant hyperthermiaAvoidance of triggering anesthetics331010 DB malignant hyperthermia susceptibility
Hypokalemic periodic paralysis, type 1 (mutational hotspots in exons 4, 11, 21, 30)Acétazolamide, treatment and prevention of paralytic attacks339
CHAT Congenital myasthenic syndrome 6 (presynaptic)Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine3211
CHRNA1 Congenital myasthenic syndrome 1A Congenital myasthenic syndrome 1B Multiple pterygium syndrome, lethal typeFluoxetine, quinidine2311
CHRNB1 Congenital myasthenic syndrome 2C, associated with acetylcholine receptor deficiency Congenital myasthenic syndrome 2A + Fetal akinesia deformation sequenceFluoxetine, quinidine2311
CHRND Congenital myasthenic syndrome 3A Congenital myasthenic syndrome 3B Congenital myasthenic syndrome 3C Multiple pterygium syndrome, lethal type Fluoxetine, quinidine2311
CHRNE Congenital myasthenic syndrome 4A, slow-channel Fluoxetine, quinidine2311
Congenital myasthenic syndrome 4B, fast-channel Acetylcholinesterase inhibitors, salbutamol, ephedrine, 3,4-diaminopyridine3312
Congenital myasthenic syndrome 4C, associated with acetylcholine receptor deficiencyAcetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine3312
CLCN1 Thomsen Myotonia congenita Becker congenita MyotoniaMexiletine (side effect including abdominal pain)/lamotrigine/Ranolazine227
Myotonia congenita (recessive)Mexiletine, carbamazepine337
Myotonia congenita (dominant)Mexiletine, carbamazepine337
COL13A1 Congenital myasthenic syndrome 193,4-Diaminopyridine Salbutamol3312
COL3A1 Ehlers-Danlos syndrome, hypermobileSymptomatic and prophylactic treatment221010 CA Ehlers-Danlos type IV, adult, pediatric
COLQ Congenital myasthenic syndrome 5Salbutamol and Ephedrine3312
CPT2 CPT II deficiency, infantile CPT II deficiency, lethal neonatal CPT II deficiency, myopathic, stress-inducedHygienic and dietetic measures: the need to abandon total diet for a low-fat diet with high carbohydrates +/− L-carnitine. Adult/muscular forms screening utility for rhabdomyolysis prevention (avoid fever, fast and long physical effort). Emergency form is given to the patient227
DES LGMD1E/Myofibrillar myopathy LGMD2R/Myofibrillar myopathyCardiac risks prevention/Defibrillator if needed23810 AD myopathy myofibrillar (adult)
Scapuloperoneal syndrome, neurogenic, Kaeser typeCardiac risks prevention/Defibrillator if needed238
Myopathy, myofibrillar, 1 Symptomatic treatment: prevention of cardiac risks. ++ Defibrillator treatment if necessary2311
DOK7 Congenital myasthenic syndrome 10 Fetal akinesia deformation sequenceSalbutamol, ephedrine3312
DPAGT1 Congenital myasthenic syndrome 13, with tubular aggregates DPAGT1-CDG/ALG7-CDGAcetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine3312
EMD Emery-Dreifuss muscular dystrophy 1, X-linkedSymptomatic treatment +/− orthopedic surgery, pacemaker, heart transplant2387 DC Emery-Dreifuss muscular dystrophy (adult)
ETFA Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIA)Hygienic diet plus symptomatic treatment339
ETFB Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIB)Hygienic diet plus symptomatic treatment339
ETFDH Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIC)Hygienic diet plus +/− riboflavin plus symptomatic treatment216
FHL1 Reducing body myopathy, X-linked 1a, severe, infantile or early childhood onset/Emery-Dreifuss muscular dystrophy 6, X-linked/myopathy x-linked with postural atrophy/scapuloperitonael myopathy X-linkedSymptomatic treatment: physiotherapist, orthopaedic surgery (tendon retraction), cardiological treatment + defibrillator + under medical supervision2387 DC Emery-Dreifuss muscular dystrophy (adult)
FKRP LGMD2I/LGMD R9 Dystroglycan-related Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 5 Muscular dystrophy-dystroglycanopathy (congenital with or without mental retardation), type B, 5Curative treatment: frequent heart damage with proposed transplants, palliative treatment216
FKTN LGMD2M/LGMD R13 Dystroglycan-related Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4 Muscular dystrophy-dystroglycanopathy (congenital without mental retardation), type B, 4Curative treatment: frequent heart damage with proposed transplants, palliative treatment216
FLAD1 Lipid storage myopathy due to flavin adenine dinucleotide synthetase deficiencySymptomatic treatment +/− riboflavine216
FLNC Myopathy, distal, 4 Myopathy, myofibrillar, 5Symptomatic treatment: physiotherapy, cardiological treatment23109 AD myopathy myofibrillar (adult)
GAA Glycogen storage disease Type II (Pompe disease)-GSDII LGMD2V (Adult onset LGMD2 related to GAA deficiency)/Pompe diseaseSpecific treatment: enzyme replacement therapy (allergic reaction to enzyme replacement, less effective in early pediatric forms), IV/15 days2299 CB (adult)
GBE1 Glycogen storage disease type IV Polyglucosan body disease, adult formSymptomatic treatment214
GFPT1 Congenital myasthenia 12, with tubular aggregatesAcetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine3312
GMPPB Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14 LGMD2TAcetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine2311
HSPG2 Dyssegmental dysplasia, Silverman-Handmaker type Schwartz-Jampel syndrome, type 1Carbamazepine2310
ISCU Myopathy with lactic acidosis, hereditarySymptomatic treatment: diagnosis is vital for handing emergency form to the patient (in case of rhabdomyolysis: hospitalized in ICU)2 26
KCNA1 Myokymia with or without episodic ataxia type 1Acetazolamide to decrease severity attacks decrease +/− antiepileptic, physiotherapist228
KCNJ2 Andersen-Tawil syndromeAcetazolamide, dichlorphenamide, antiarythmic therapeutics.Treatment and prevention of paralytic attacks, cardiac arythmias, malformation3311
KCNQ2 Epileptic encephalopathy, early infantile, 7 MyokymiaTegretol (depend of the type of mutation)2310
LAMB2 Pierson syndromePalliative treatment, treatment of renal failure, Ephedrine for myasthenic syndrome2210
LMNA LGMD1B/Emery-Dreifuss muscular dystrophy Congenital muscular dystrophy due to LMNA defect Symptomatic treatment: physiotherapist, orthopaedic surgery (tendon retraction), cardiological treatment, implantable Cardioverter-Defibrillator (ICD), Efficiency for preventing fatal ventricular tachycardia Heart transplantation 33129-10 BN Dilated cardiomyopathy 7 DC Emery-Dreifuss muscular dystrophy
MUSK Congenital myasthenic syndrome 9, associated with acetylcholine receptor deficiency Fetal akinesia deformation sequenceSalbutamol, +/− 3,4-Diaminopyridine/Ephedrine (partially effective)3312
PGM1 PGM1-CDG (Congenital Disorder of Glycosylation)/Glycogen storage disease type XIVSymptomatic treatment. Possible improvement with galactose intake reinforcing the importance of screening214
PHKA1 Glycogen storage disease type IXd (ex type VIII) or X-linked muscle phosphorylase kinase deficiencyHygienodietic rules, physiotherapy337
PHKB Glycogen storage disease type IxbHygienodietic rules, physiotherapy337
PLEC Congenital myasthenic syndrome with epidermolysis bullosa Epidermolysis bullosa simplex with muscular dystrophy LGMD2Q/LGMD R17 Plectin-relatedSymptomatic treatment 2311
PREPL Congenital myasthenic syndrome 22Acetylcholinesterase inhibitor2311
PRKAG2 Glycogen storage disease of heart, lethal congenital Cardiomyopathy, familial hypertrophic, with Wolff-Parkinson-white syndrome-CMH6Prevention interest of arrhythmias and sudden death32810 NN cardiomyopathy familial hypertrophic
PYGM Glycogen storage disease Type V (McArdle disease)Measures to prevent episodes of rhabdomyolysis (avoid intense efforts) plus prevention in case of anesthesia and during pregnancies. Effectiveness on the phenomenon of the second wind of taking sugars by mouth before exercise2269 NC Glycogen storage disease V (adult)
RAPSN Congenital myasthenic syndrome 11, associated with acetylcholine receptor deficiency Fetal akinesia deformation sequenceAcetylcholinesterase inhibitors, salbutamol3312
RYR1 Susceptibility to malignant hyperthermiaAvoidance of triggering anesthetics331010 DB malignant hyperthermia susceptibility
SCN4A Hyperkalemic periodic paralysisAcetazolamide339
Paramyotonia congenitaMexiletine, carbamazepine339
Potassium-aggravated myotonias (myotonia fluctuans)Mexiletine, carbamazepine, acetazolamide339
Potassium-aggravated myotonias (myotonia permanens, severe neonatal episodic laryngospasm)Mexiletine, carbamazepine, acetazolamide2311
Congenital myasthenic syndrome type 16Acetylcholinesterase inhibitors, acetazolamide2311
SLC22A5 Primary systemic carnitine deficiencyL-carnitine per-os. Crucial importance of diagnosis as severe cardiomyopathy treatable by carnitine supplementation227
SLC25A1 Combined D-2- and L-2-hydroxyglutaric aciduria (Impaired neuromuscular transmission due to mitochondrial citrate carrier mutations)Acetylcholinesterase inhibitors, 3,4-diaminopyridine2311
SLC25A32 Riboflavin-responsive exercise intolerance (RREI)Riboflavine plus symptomatic treatment214
SLC5A7 Congenital myasthenic syndrome 20, presynaptic Distal hereditary motor neuronopathy type VIIAAcetylcholinesterase inhibitors, salbutamol3312
SNAP25 Congenital myasthenic syndrome 183,4-Diaminopyrimidine2311
STIM1 Tubular aggregate myopathy 1 Stormorken syndromeMonitoring of Stormorken syndrome thrombopenia, haemorrhage, thrombosis225
SYT2 Congenital myasthenic syndrome 7, presynaptic (Lambert-Eaton myasthenic syndrome and nonprogressive motor neuropathy)3,4-Diaminopyrimidine2311
TNNI2 Distal arthrogryposis multiplex congenita type 2BSymptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy)214
TNNT3 Distal arthorgryposis type 2BSymptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy)214
TRIP4 Muscular dystrophy, congenital, davignon-chauveau typeSymptomatic treatment + orthopedic surgery216
TRPV4 Congenital distal spinal muscular atrophy, non progressiveSymptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy)214
TTN EOMFC-Salih myopathy Early-Onset Myopathy with Fatal CardiomyopathyCardiac monitoring/pacemaker238
Congenital myopathy with cores and cardiopathyCardiac monitoring/nocturnal ventilation/pacemaker237
Congenital myopathy with central nucleiNocturnal ventilation/Cardiac monitoring237
Emery-Dreifuss muscular dystrophy-likeNocturnal ventilation/Cardiac monitoring237
LGMD 2J/LGMDR10 Titin-related Cardiac monitoring/pacemaker238
HMERFCardiac monitoring and non-invasive ventilation238
LGMD 2J/LGMDR10 Titin-related, with cardiomyopathy Nocturnal ventilation/Cardiac monitoring237
We also evaluated the distribution of actionability scores within the 43 pairs genes/disorders (36 myopathy genes) with higher actionability global scores (≥9) (Figure 1c), of which only 8 had already been scored by ClinGen (Table 1). For the severity indicator: 77% had very high mortality rates, 14% had moderate severity, and 9% low severity. For the disease penetrance indicator: the information was available for 95% of the genes and mostly with full penetrance (81%). The effectiveness of intervention was moderate (score 2) or high (score 3) for all genes. The nature of intervention was moderate or low risk (scores 2 and 3) for 97% of the genes. We then compared these actionability scores with those of ClinGen AWG genes with a global score ≥ 9 (111 genes corresponding to 78 disorders and 125 outcome-intervention pairs) (Figure 1d). We found that the distribution of scores was different between both groups concerning the outcome-related domains (severity and likelihood), with higher scores for myopathy genes (p < 0.05). Results for both intervention-related indicators were similar in the two categories of genes.

3. Discussion

We applied here, in an exhaustive way for the first time in the field of myopathies, the ClinGen AWG scoring methodological approach. We encountered a lack of information on the penetrance data of myopathy genes in the literature (for 74% of genes), which was not the case for genes from the ClinGen AWG list genes (Figure 1e) [4]. This lack of information on penetrance led to a “loss” of 1 to 3 final scoring points, that could account for the lower final average actionability score of myopathy genes (score 4–5) compared to the genes scored by the ClinGen AWG (9–10). Noteworthy, an important proportion of myopathies is of autosomal recessive inheritance, with expected complete penetrance. The use of the data collected by the French National Rare Diseases Data Bank (BAMARA) will possibly make it easier in the upcoming years to access data on penetrance for rare myopathies. Thanks to our scoring work, we have identified 63 myopathy genes (corresponding to 78 disorders) that could be actionable on their management (intervention moderately or highly effective, without a high risk), including 43 genes/disorders with actionability scores ≥ 9. However, only 12 of these myopathy genes were previously scored by ClinGen. Of the 31 genes not scored by ClinGen AWG, 21 are part of congenital myasthenic syndromes (Table 1), for which there are specific treatments, reflecting the value of this scoring work [7]. Some of the 63 myopathy genes/disorders have a lower score of actionability (<9) but are considered to have medical value for patient care. The CLCN1 gene is a good example in the recessive or dominant myotonia congenita (Table 1). The low global score (7) is due to the modest morbidity (severity scored as 1), but the treatment is highly effective (scored as 3) and acceptable (scored as 3). For some genes associated with several diseases, the increase in the global score for actionability is due to an increase in the severity score. For example, the SCN4A gene is associated with an actionability score of 9 in the hyperkalemic periodic paralysis (severity score at 1), compared to a score of 11 in the congenital myasthenic syndrome type 16 (severity score at 3) [8]. Our results will allow the integration of the notion of actionable genes into strategic choices for molecular diagnostic strategies and management of patients with genetic myopathies. We recommend that these 63 genes be analyzed as a priority in the sequencing of gene panels, exomes, or genomes, in order to offer a rapid diagnosis to patients and optimize patient care (treatabolome database in preparation). Furthermore, these genes (at least the 36 with global score ≥ 9) should be considered for a possible addition to the ACMG actionable gene list, in order to assess them as secondary data of medical value for patient care. Of course, patients’ phenotyping remains essential, and the absence of a mutation in this panel of genes does not exclude an intronic mutation in one of these genes. DMD, DM1, and DM2 genes were not on the list of FILENEMUS genes analyzed by NGS [5]. However, they should also be considered actionable, given their important consequences on patient management, as well as the SMN1 gene. The clinical actionability of genes must be considered as an evolving concept, in relation to progresses in therapeutic approaches, or diagnosis. In recent years, new therapeutic options such as gene therapies have been developed and offer hope for patients with myopathies. It will be important to take these new therapeutic approaches into account in the coming years as several additional myopathic genes will then be considered actionable.

4. Materials and Methods

We compared the scores obtained for the myopathy genes/disorders with those of the ClinGen AWG (127 genes corresponding to 78 disorders with 213 outcome-intervention pairs) [4], using the nonparametric Kruskal–Wallis test. Thereafter, we analyzed the distribution of scores of the four indicators for the ClinGen AWG and myopathy genes using the chi-square method that admits differences in group size.
  8 in total

1.  A National French consensus on gene lists for the diagnosis of myopathies using next-generation sequencing.

Authors:  Martin Krahn; Valérie Biancalana; Mathieu Cerino; Aurélien Perrin; Laurence Michel-Calemard; Juliette Nectoux; France Leturcq; Céline Bouchet-Séraphin; Cécile Acquaviva-Bourdain; Emmanuelle Campana-Salort; Annamaria Molon; Jon Andoni Urtizberea; Frédérique Audic; Brigitte Chabrol; Jean Pouget; Roseline Froissart; Judith Melki; John Rendu; François Petit; Corinne Métay; Nathalie Seta; Damien Sternberg; Julien Fauré; Mireille Cossée
Journal:  Eur J Hum Genet       Date:  2018-12-14       Impact factor: 4.246

2.  Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource.

Authors:  Natasha T Strande; Erin Rooney Riggs; Adam H Buchanan; Ozge Ceyhan-Birsoy; Marina DiStefano; Selina S Dwight; Jenny Goldstein; Rajarshi Ghosh; Bryce A Seifert; Tam P Sneddon; Matt W Wright; Laura V Milko; J Michael Cherry; Monica A Giovanni; Michael F Murray; Julianne M O'Daniel; Erin M Ramos; Avni B Santani; Alan F Scott; Sharon E Plon; Heidi L Rehm; Christa L Martin; Jonathan S Berg
Journal:  Am J Hum Genet       Date:  2017-05-25       Impact factor: 11.025

3.  Evidence-based assessments of clinical actionability in the context of secondary findings: Updates from ClinGen's Actionability Working Group.

Authors:  Elizabeth M Webber; Jessica Ezzell Hunter; Leslie G Biesecker; Adam H Buchanan; Elizabeth V Clarke; Erin Currey; Orit Dagan-Rosenfeld; Kristy Lee; Noralane M Lindor; Christa Lese Martin; Aleksandar Milosavljevic; Kathleen F Mittendorf; Kristin R Muessig; Julianne M O'Daniel; Ronak Y Patel; Erin M Ramos; Shannon Rego; Anne M Slavotinek; Nara Lygia M Sobriera; Meredith A Weaver; Marc S Williams; James P Evans; Katrina A B Goddard
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

4.  ACMG policy statement: updated recommendations regarding analysis and reporting of secondary findings in clinical genome-scale sequencing.

Authors: 
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

5.  Targeted Therapies for Skeletal Muscle Ion Channelopathies: Systematic Review and Steps Towards Precision Medicine.

Authors:  Jean-François Desaphy; Concetta Altamura; Savine Vicart; Bertrand Fontaine
Journal:  J Neuromuscul Dis       Date:  2021

6.  A semiquantitative metric for evaluating clinical actionability of incidental or secondary findings from genome-scale sequencing.

Authors:  Jonathan S Berg; Ann Katherine M Foreman; Julianne M O'Daniel; Jessica K Booker; Lacey Boshe; Timothy Carey; Kristy R Crooks; Brian C Jensen; Eric T Juengst; Kristy Lee; Daniel K Nelson; Bradford C Powell; Cynthia M Powell; Myra I Roche; Cecile Skrzynia; Natasha T Strande; Karen E Weck; Kirk C Wilhelmsen; James P Evans
Journal:  Genet Med       Date:  2015-08-13       Impact factor: 8.822

7.  Targeted therapies for congenital myasthenic syndromes: systematic review and steps towards a treatabolome.

Authors:  Rachel Thompson; Gisèle Bonne; Paolo Missier; Hanns Lochmüller
Journal:  Emerg Top Life Sci       Date:  2019-01-28

8.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

  8 in total

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