| Literature DB >> 35955641 |
Maude Vecten1,2, Emmanuelle Pion3,4, Marc Bartoli2, Raul Juntas Morales5, Damien Sternberg6, John Rendu7, Tanya Stojkovic8,9, Cécile Acquaviva Bourdain10, Corinne Métay11, Isabelle Richard12, Mathieu Cerino2,13, Mathieu Milh2,14, Emmanuelle Campana-Salort2, Svetlana Gorokhova2,15, Nicolas Levy2,15, Xénia Latypova7, Gisèle Bonne9, Valérie Biancalana16, François Petit17, Annamaria Molon4, Aurélien Perrin3,18, Pascal Laforêt19, Shahram Attarian20, Martin Krahn2,15, Mireille Cossée3,18.
Abstract
The implementation of high-throughput diagnostic sequencing has led to the generation of large amounts of mutational data, making their interpretation more complex and responsible for long delays. It has been important to prioritize certain analyses, particularly those of "actionable" genes in diagnostic situations, involving specific treatment and/or management. In our project, we carried out an objective assessment of the clinical actionability of genes involved in myopathies, for which only few data obtained methodologically exist to date. Using the ClinGen Actionability criteria, we scored the clinical actionability of all 199 genes implicated in myopathies published by FILNEMUS for the "National French consensus on gene Lists for the diagnosis of myopathies using next generation sequencing". We objectified that 63 myopathy genes were actionable with the currently available data. Among the 36 myopathy genes with the highest actionability scores, only 8 had been scored to date by ClinGen. The data obtained through these methodological tools are an important resource for strategic choices in diagnostic approaches and the management of genetic myopathies. The clinical actionability of genes has to be considered as an evolving concept, in relation to progresses in disease knowledge and therapeutic approaches.Entities:
Keywords: actionability; diagnostic; genetics; myopathy; next generation sequencing
Mesh:
Year: 2022 PMID: 35955641 PMCID: PMC9369031 DOI: 10.3390/ijms23158506
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1Actionability scores for myopathy genes and ACMG genes.
The 63 myopathy genes with a medical value for patient care. The 63 genes of myopathies were selected based on effectiveness of the treatment with a score ≥ 2 and nature of the intervention ≥ 1. The global score indicated also takes into account the scores of severity and penetrance/likelihood. Genes with a global score ≥ 9 are highlighted in grey. LGMD old/new names according to the LGMD nomenclature are indicated.
| Gene | Disorder | Intervention | Effectiveness | Nature of Intervention | Global Score | Clingen Scoring |
|---|---|---|---|---|---|---|
|
| Mitochondrial complex I deficiency due to ACAD9 deficiency | Riboflavine | 2 | 2 | 6 | |
|
| Acyl-CoA dehydrogenase (very long chain) deficiency (VLCAD deficiency) | Hygienic and dietetic measures +/− triheptanoin acid/Medium cahin triglyceride/N-acetylcystein | 2 | 1 | 9 | |
|
| Glycogen storage disease type IIIa-GSD IIIa | Hygienic and dietetic measures with specific diet | 2 | 2 | 6 | |
|
| Congenital myasthenic syndrome 8, with pre- and postsynaptic defects | Salbutamol, ephedrine | 3 | 3 | 12 | |
|
| Myopathy due to myoadenylate deaminase deficiency | Symptomatic treatment/D-ribose | 2 | 1 | 4 | |
|
| Myofibrillar myopathy 6 | Symptomatic treatment: Implantable Cardioverter-Defibrillator (ICD)/ventilation | 2 | 3 | 11 | 9 AD |
| Susceptibility to malignant hyperthermia | Avoidance of triggering anesthetics | 3 | 3 | 10 | 10 DB | |
| Hypokalemic periodic paralysis, type 1 (mutational hotspots in exons 4, 11, 21, 30) | Acétazolamide, treatment and prevention of paralytic attacks | 3 | 3 | 9 | ||
|
| Congenital myasthenic syndrome 6 (presynaptic) | Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine | 3 | 2 | 11 | |
|
| Congenital myasthenic syndrome 1A | Fluoxetine, quinidine | 2 | 3 | 11 | |
|
| Congenital myasthenic syndrome 2C, associated with acetylcholine receptor deficiency | Fluoxetine, quinidine | 2 | 3 | 11 | |
|
| Congenital myasthenic syndrome 3A | Fluoxetine, quinidine | 2 | 3 | 11 | |
|
| Congenital myasthenic syndrome 4A, slow-channel | Fluoxetine, quinidine | 2 | 3 | 11 | |
| Congenital myasthenic syndrome 4B, fast-channel | Acetylcholinesterase inhibitors, salbutamol, ephedrine, 3,4-diaminopyridine | 3 | 3 | 12 | ||
| Congenital myasthenic syndrome 4C, associated with acetylcholine receptor deficiency | Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine | 3 | 3 | 12 | ||
|
| Thomsen Myotonia congenita | Mexiletine (side effect including abdominal pain)/lamotrigine/Ranolazine | 2 | 2 | 7 | |
| Myotonia congenita (recessive) | Mexiletine, carbamazepine | 3 | 3 | 7 | ||
| Myotonia congenita (dominant) | Mexiletine, carbamazepine | 3 | 3 | 7 | ||
|
| Congenital myasthenic syndrome 19 | 3,4-Diaminopyridine | 3 | 3 | 12 | |
|
| Ehlers-Danlos syndrome, hypermobile | Symptomatic and prophylactic treatment | 2 | 2 | 10 | 10 CA |
|
| Congenital myasthenic syndrome 5 | Salbutamol and Ephedrine | 3 | 3 | 12 | |
|
| CPT II deficiency, infantile | Hygienic and dietetic measures: the need to abandon total diet for a low-fat diet with high carbohydrates +/− L-carnitine. Adult/muscular forms screening utility for rhabdomyolysis prevention (avoid fever, fast and long physical effort). Emergency form is given to the patient | 2 | 2 | 7 | |
|
| LGMD1E/Myofibrillar myopathy | Cardiac risks prevention/Defibrillator if needed | 2 | 3 | 8 | 10 AD |
| Scapuloperoneal syndrome, neurogenic, Kaeser type | Cardiac risks prevention/Defibrillator if needed | 2 | 3 | 8 | ||
| Myopathy, myofibrillar, 1 | Symptomatic treatment: prevention of cardiac risks. ++ Defibrillator treatment if necessary | 2 | 3 | 11 | ||
|
| Congenital myasthenic syndrome 10 | Salbutamol, ephedrine | 3 | 3 | 12 | |
|
| Congenital myasthenic syndrome 13, with tubular aggregates | Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine | 3 | 3 | 12 | |
|
| Emery-Dreifuss muscular dystrophy 1, X-linked | Symptomatic treatment +/− orthopedic surgery, pacemaker, heart transplant | 2 | 3 | 8 | 7 DC |
|
| Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIA) | Hygienic diet plus symptomatic treatment | 3 | 3 | 9 | |
|
| Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIB) | Hygienic diet plus symptomatic treatment | 3 | 3 | 9 | |
|
| Multiple acyl-CoA dehydrogenase deficiency (MADD; Glutaric aciduria type IIC) | Hygienic diet plus +/− riboflavin plus symptomatic treatment | 2 | 1 | 6 | |
|
| Reducing body myopathy, X-linked 1a, severe, infantile or early childhood onset/Emery-Dreifuss muscular dystrophy 6, X-linked/myopathy x-linked with postural atrophy/scapuloperitonael myopathy X-linked | Symptomatic treatment: physiotherapist, orthopaedic surgery (tendon retraction), cardiological treatment + defibrillator + under medical supervision | 2 | 3 | 8 | 7 DC |
|
| LGMD2I/LGMD R9 Dystroglycan-related | Curative treatment: frequent heart damage with proposed transplants, palliative treatment | 2 | 1 | 6 | |
|
| LGMD2M/LGMD R13 Dystroglycan-related | Curative treatment: frequent heart damage with proposed transplants, palliative treatment | 2 | 1 | 6 | |
|
| Lipid storage myopathy due to flavin adenine dinucleotide synthetase deficiency | Symptomatic treatment +/− riboflavine | 2 | 1 | 6 | |
|
| Myopathy, distal, 4 | Symptomatic treatment: physiotherapy, cardiological treatment | 2 | 3 | 10 | 9 AD |
|
| Glycogen storage disease Type II (Pompe disease)-GSDII | Specific treatment: enzyme replacement therapy (allergic reaction to enzyme replacement, less effective in early pediatric forms), IV/15 days | 2 | 2 | 9 | 9 CB |
|
| Glycogen storage disease type IV | Symptomatic treatment | 2 | 1 | 4 | |
|
| Congenital myasthenia 12, with tubular aggregates | Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine | 3 | 3 | 12 | |
|
| Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14 | Acetylcholinesterase inhibitors, 3,4-diaminopyridine, salbutamol, ephedrine | 2 | 3 | 11 | |
|
| Dyssegmental dysplasia, Silverman-Handmaker type | Carbamazepine | 2 | 3 | 10 | |
|
| Myopathy with lactic acidosis, hereditary | Symptomatic treatment: diagnosis is vital for handing emergency form to the patient (in case of rhabdomyolysis: hospitalized in ICU) | 2 | 2 | 6 | |
|
| Myokymia with or without episodic ataxia type 1 | Acetazolamide to decrease severity attacks | 2 | 2 | 8 | |
|
| Andersen-Tawil syndrome | Acetazolamide, dichlorphenamide, antiarythmic therapeutics.Treatment and prevention of paralytic attacks, cardiac arythmias, malformation | 3 | 3 | 11 | |
|
| Epileptic encephalopathy, early infantile, 7 | Tegretol | 2 | 3 | 10 | |
|
| Pierson syndrome | Palliative treatment, treatment of renal failure, Ephedrine for myasthenic syndrome | 2 | 2 | 10 | |
|
| LGMD1B/Emery-Dreifuss muscular dystrophy | Symptomatic treatment: physiotherapist, orthopaedic surgery (tendon retraction), cardiological treatment, implantable Cardioverter-Defibrillator (ICD), Efficiency for preventing fatal ventricular tachycardia | 3 | 3 | 12 | 9-10 BN |
|
| Congenital myasthenic syndrome 9, associated with acetylcholine receptor deficiency | Salbutamol, +/− 3,4-Diaminopyridine/Ephedrine (partially effective) | 3 | 3 | 12 | |
|
| PGM1-CDG (Congenital Disorder of Glycosylation)/Glycogen storage disease type XIV | Symptomatic treatment. Possible improvement with galactose intake reinforcing the importance of screening | 2 | 1 | 4 | |
|
| Glycogen storage disease type IXd (ex type VIII) or X-linked muscle phosphorylase kinase deficiency | Hygienodietic rules, physiotherapy | 3 | 3 | 7 | |
|
| Glycogen storage disease type Ixb | Hygienodietic rules, physiotherapy | 3 | 3 | 7 | |
|
| Congenital myasthenic syndrome with epidermolysis bullosa | Symptomatic treatment | 2 | 3 | 11 | |
|
| Congenital myasthenic syndrome 22 | Acetylcholinesterase inhibitor | 2 | 3 | 11 | |
|
| Glycogen storage disease of heart, lethal congenital | Prevention interest of arrhythmias and sudden death | 3 | 2 | 8 | 10 NN |
|
| Glycogen storage disease Type V (McArdle disease) | Measures to prevent episodes of rhabdomyolysis (avoid intense efforts) plus prevention in case of anesthesia and during pregnancies. Effectiveness on the phenomenon of the second wind of taking sugars by mouth before exercise | 2 | 2 | 6 | 9 NC |
|
| Congenital myasthenic syndrome 11, associated with acetylcholine receptor deficiency | Acetylcholinesterase inhibitors, salbutamol | 3 | 3 | 12 | |
|
| Susceptibility to malignant hyperthermia | Avoidance of triggering anesthetics | 3 | 3 | 10 | 10 DB malignant hyperthermia susceptibility |
|
| Hyperkalemic periodic paralysis | Acetazolamide | 3 | 3 | 9 | |
| Paramyotonia congenita | Mexiletine, carbamazepine | 3 | 3 | 9 | ||
| Potassium-aggravated myotonias (myotonia fluctuans) | Mexiletine, carbamazepine, acetazolamide | 3 | 3 | 9 | ||
| Potassium-aggravated myotonias (myotonia permanens, severe neonatal episodic laryngospasm) | Mexiletine, carbamazepine, acetazolamide | 2 | 3 | 11 | ||
| Congenital myasthenic syndrome type 16 | Acetylcholinesterase inhibitors, acetazolamide | 2 | 3 | 11 | ||
|
| Primary systemic carnitine deficiency | L-carnitine per-os. Crucial importance of diagnosis as severe cardiomyopathy treatable by carnitine supplementation | 2 | 2 | 7 | |
|
| Combined D-2- and L-2-hydroxyglutaric aciduria (Impaired neuromuscular transmission due to mitochondrial citrate carrier mutations) | Acetylcholinesterase inhibitors, 3,4-diaminopyridine | 2 | 3 | 11 | |
|
| Riboflavin-responsive exercise intolerance (RREI) | Riboflavine plus symptomatic treatment | 2 | 1 | 4 | |
|
| Congenital myasthenic syndrome 20, presynaptic | Acetylcholinesterase inhibitors, salbutamol | 3 | 3 | 12 | |
|
| Congenital myasthenic syndrome 18 | 3,4-Diaminopyrimidine | 2 | 3 | 11 | |
|
| Tubular aggregate myopathy 1 | Monitoring of Stormorken syndrome thrombopenia, haemorrhage, thrombosis | 2 | 2 | 5 | |
|
| Congenital myasthenic syndrome 7, presynaptic (Lambert-Eaton myasthenic syndrome and nonprogressive motor neuropathy) | 3,4-Diaminopyrimidine | 2 | 3 | 11 | |
|
| Distal arthrogryposis multiplex congenita type 2B | Symptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy) | 2 | 1 | 4 | |
|
| Distal arthorgryposis type 2B | Symptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy) | 2 | 1 | 4 | |
|
| Muscular dystrophy, congenital, davignon-chauveau type | Symptomatic treatment + orthopedic surgery | 2 | 1 | 6 | |
|
| Congenital distal spinal muscular atrophy, non progressive | Symptomatic and palliative treatment (orthopedic surgery, physiotherapy, ergotherapy) | 2 | 1 | 4 | |
|
| EOMFC-Salih myopathy | Cardiac monitoring/pacemaker | 2 | 3 | 8 | |
| Congenital myopathy with cores and cardiopathy | Cardiac monitoring/nocturnal ventilation/pacemaker | 2 | 3 | 7 | ||
| Congenital myopathy with central nuclei | Nocturnal ventilation/Cardiac monitoring | 2 | 3 | 7 | ||
| Emery-Dreifuss muscular dystrophy-like | Nocturnal ventilation/Cardiac monitoring | 2 | 3 | 7 | ||
| LGMD 2J/LGMDR10 Titin-related | Cardiac monitoring/pacemaker | 2 | 3 | 8 | ||
| HMERF | Cardiac monitoring and non-invasive ventilation | 2 | 3 | 8 | ||
| LGMD 2J/LGMDR10 Titin-related, with cardiomyopathy | Nocturnal ventilation/Cardiac monitoring | 2 | 3 | 7 |