| Literature DB >> 35955580 |
Anna Y Belorusova1,2,3,4, Daniela Rovito1,2,3,4,5, Yassmine Chebaro1,2,3,4, Stefanie Doms6, Lieve Verlinden6, Annemieke Verstuyf6, Daniel Metzger1,2,3,4,5, Natacha Rochel1,2,3,4, Gilles Laverny1,2,3,4,5.
Abstract
The Vitamin D receptor (VDR) plays a key role in calcium homeostasis, as well as in cell proliferation and differentiation. Among the large number of VDR ligands that have been developed, we have previously shown that BXL-62 and Gemini-72, two C-20-modified vitamin D analogs are highly potent VDR agonists. In this study, we show that both VDR ligands restore the transcriptional activities of VDR variants unresponsive to the natural ligand and identified in patients with rickets. The elucidated mechanisms of action underlying the activities of these C-20-modified analogs emphasize the mutual adaptation of the ligand and the VDR ligand-binding pocket.Entities:
Keywords: rare diseases; structure function relationship; vitamin D
Mesh:
Substances:
Year: 2022 PMID: 35955580 PMCID: PMC9369186 DOI: 10.3390/ijms23158445
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1Structure and transcriptional activity of the C-20 modified analogs BXL-62 and Gemini-72. (A) Chemical structures of 1,25D3 and analogs; (B) Fold change of the relative activity of a reporter gene under the control of the promoter region of CYP24A1 in COS cells transiently transfected with hVDR, and treated for 24 h, as indicated. The results are shown as % of the relative activity determined in cells overexpressing WT VDR and treated with 10 nM of 1,25D3. n = 3 biological replicates/condition. * p < 0.05 vs. vehicle. # p < 0.05 vs. a similar dose of 1,25D3.
Figure 2Transcriptional activity of point-mutated VDR. (A) VDR variants (in blue) identified in HVDRR patients mapped onto the hVDR LBD structure in the presence of 1,25D3 (orange) (PDB 1DB1); (B–E) Relative activity of a reporter gene under the control of the promoter region of CYP24A1 in COS cells transiently transfected or not (−) with a VDR variant. Cells were treated for 24 h with the indicated ligand. The results are shown as fold change compared to the condition treated with 10 nM 1,25D3 and overexpressing WT VDR (B), treated with 100 nM 1,25D3 and overexpressing VDR W286R (C) or L227P (D), and treated with 10 nM 1,25D3 and overexpressing VDRgem (E). n = 3–6 biological replicates/condition. * p < 0.05 vs. vehicle. # p < 0.05 vs. 1,25D3.
Figure 3Crystal structure of zVDR—BXL-62. (A) Superposition of 1,25D3, BXL-62 and Gemini-72 ligands in the crystal structures of the zVDR LBD complexes (zVDR-1,25D3: PDB 2HC4; zVDR-BXL-62: PDB 7BNS; zVDR-Gemini-72: PDB 3O1D); (B) Close-up view of the VDR ligand-binding pocket around the BXL-62 side chain (in blue). Residues that contact the ligand with a cutoff of 4.0 Å are labelled. Residues that form additional or stronger contacts with BXL-62 compared to 1,25D3 are underlined; (C) Superposition of BXL-62 (blue) and 1,25D3 (orange) side chains within the VDR ligand-binding pocket with residues that form stronger contacts with BXL-62 than with 1,25D3 are highlighted. * indicates the torsion angles of C16-C17-C20-C22.
Figure 4Crystal structure of zVDRgem—BXL-62, and dynamic network of ligand–amino acid contacts in VDR complexes. (A) Superposition of BXL-62 on the crystal structures of the zVDR WT (PDB 7BNS) and zVDRgem (PDB 7BNU) complexes; (B) Labeled zVDRgem residues correspond to those forming hydrogen bonds with BXL-62 (red) and those underlined correspond to residues that form stronger contacts with BXL-62 than with 1,25D3; (C,D). Contact probabilities between 1,25D3 (in orange), BXL-62 (in green) or Gemini-72 (in purple) and zVDR WT (C) and zVDRgem (D). Five independent 100 ns molecular dynamics (MD) simulations were computed and averaged, and the MD trajectories at the residue level interactions were analyzed with a distance threshold of 3.5 Å.
Distance probabilities in zVDR and zVDRgem complexes. The distance criteria used implies that at least one heavy atom from each side chain lies within 3.5 Å of distance.
| His333-Lig | His423-Lig | His333-His423 | His423-His337 | ||
|---|---|---|---|---|---|
| zVDR WT | 1,25D3 | 0.91 | 0.77 | 0.17 | 0 |
| BXL-62 | 0.87 | 0.79 | 0.15 | 0 | |
| zVDRgem | 1,25D3 | 0.80 | 0.24 | 0.06 | 0.53 |
| BXL-62 | 0.65 | 0.79 | 0.21 | 0.07 |
Figure 5Effect of BXL-62 on intestinal VDR target gene transcript levels and serum calcium levels. Relative duodenal transcript levels of Slc37a2 (A) and Slc30a10 (B) in wild type (white bar) and VDRgem (black bar) mice after a 6-h oral administration of vehicle, 3, and 10 µg/kg of BXL-62. The transcript levels of the 18S housekeeping gene were used as internal control; (C) Serum calcium levels of VDRgem mice 24-h after 4 administrations of vehicle (oil), or 10 µg/kg BXL-62 on 4 consecutive days. * p < 0.05 vs. vehicle. n > 3 mice/group.