Miguel A Maestro1, Ferdinand Molnár2, Carsten Carlberg3. 1. Departamento de Química-CICA , Universidade da Coruña , ES-15071 A Coruña , Spain. 2. School of Science and Technology, Department of Biology , Nazarbayev University , KZ-010000 Astana , Kazakhstan. 3. School of Medicine, Institute of Biomedicine , University of Eastern Finland , FI-70211 Kuopio , Finland.
Abstract
For many individuals, in particular during winter, supplementation with the secosteroid vitamin D3 is essential for the prevention of bone disorders, muscle weakness, autoimmune diseases, and possibly also different types of cancer. Vitamin D3 acts via its metabolite 1α,25-dihydroxyvitamin D3 [1,25(OH)2D3] as potent agonist of the transcription factor vitamin D receptor (VDR). Thus, vitamin D directly affects chromatin structure and gene regulation at thousands of genomic loci, i.e., the epigenome and transcriptome of its target tissues. Modifications of 1,25(OH)2D3 at its side-chain, A-ring, triene system, or C-ring, alone and in combination, as well as nonsteroidal mimics provided numerous potent VDR agonists and some antagonists. The nearly 150 crystal structures of VDR's ligand-binding domain with various vitamin D compounds allow a detailed molecular understanding of their action. This review discusses the most important vitamin D analogs presented during the past 10 years and molecular insight derived from new structural information on the VDR protein.
For many individuals, in particular during winter, supplementation with the secosteroid vitamin D3 is essential for the prevention of bone disorders, muscle weakness, autoimmune diseases, and possibly also different types of cancer. Vitamin D3 acts via its metabolite 1α,25-dihydroxyvitamin D3 [1,25(OH)2D3] as potent agonist of the transcription factor vitamin D receptor (VDR). Thus, vitamin D directly affects chromatin structure and gene regulation at thousands of genomic loci, i.e., the epigenome and transcriptome of its target tissues. Modifications of 1,25(OH)2D3 at its side-chain, A-ring, triene system, or C-ring, alone and in combination, as well as nonsteroidal mimics provided numerous potent VDR agonists and some antagonists. The nearly 150 crystal structures of VDR's ligand-binding domain with various vitamin D compounds allow a detailed molecular understanding of their action. This review discusses the most important vitamin D analogs presented during the past 10 years and molecular insight derived from new structural information on the VDR protein.
An UV-B (290–315
nm)-dependent, nonenzymatic reaction in
human skin converts the cholesterol precursor 7-dehydrocholesterol
into previtamin D3 that further isomerizes into vitamin
D3 (calciferol, 1)[1] (Figure ). Similarly,
UV-B-radiated plants and mushrooms are able to produce the isomer
vitamin D2 (ergocalciferol, 2) based on their
membrane sterol ergosterol.[2] Both secosteroids
are themselves biologically inert and have to be activated by hydroxylation
first at C-25, leading to the prehormones 25-hydroxyvitamin D3 [25(OH)D, (calcidiol, 3)] and 25(OH)D, and then at C-1,
creating 1,25(OH)D (calcitriol, 4)[3] and 1,25(OH), respectively.
Figure 1
Vitamin D metabolites and analogs available on the market.
Vitamin D metabolites and analogs available on the market.25(OH)D is the metabolically
most stable and abundant vitamin D metabolite, and its serum levels
serve as a biomarker of the vitamin D status of individuals.[4] The biologically active form of vitamin D3, 1,25(OH)D, acts via activation of the transcription
factor VDR as a nuclear hormone that directly affects gene regulation.[5] The physiological role of vitamin D is the regulation
of calcium homeostasis for maintaining bone mineralization[6] as well as the modulation of innate and adaptive
immunity[7] for improving the response to
infections by microbes, such as Mycobacterium tuberculosis,[8] and preventing autoimmune diseases,
such as multiple sclerosis.[9]Lifestyle
decisions, such as staying predominantly indoors and
covered by textile outdoors, combined with changes in seasons and
climate cause, for many individuals, insufficient exposure to UV-B
and thus low endogenous production of vitamin D3. Human
diet is often rather low in vitamin D because only fatty fish and
UV-B irradiated mushrooms have reasonable quantities of the vitamin
D3 or vitamin D2, respectively. The fortification
of milk, margarine, and juices with vitamin D3 or vitamin
D2 is applied in some countries. Moreover, in winter months
daily supplementation with at least 25 μg (1000 IU) of vitamin
D3 is recommended in order to prevent vitamin D deficiency.[10] The latter not only would result in rickets
in children and in a higher risk of bone fractures due to osteoporosis
or osteomalacia in adults,[11] but also will
compromise the function of the immune system and the claimed preventive
actions of vitamin D against cardiovascular diseases, diabetes, neuropsychiatric
disorders, and cancer.[12] Supplementation
with vitamin D3 clearly increased in the general population,
e.g., the sales of vitamin D supplementation products increased within
1 decade nearly 15-fold.[13]There
is no doubt that a sufficient vitamin D status is important
for bone health,[14] but overdosing with
vitamin D3, 1,25(OH)D, or its synthetic analogs
may result in tissue calcification.[15] Symptoms
of hypercalcemia are (i) digestive distress, such as vomiting, nausea,
and stomach pain, (ii) fatigue, dizziness, and confusion, (iii) excessive
thirst, and (iv) frequent urination. However, hypercalcemia occurs
rarely and no other severe side effects or toxicity of vitamin D overdosing
is known. Nevertheless, higher doses of vitamin D3 are
not recommended as nutritional supplement for reaching nonskeletal
effects of the vitamin. Similarly, the main goal of the development
of vitamin D analogs is to identify compounds with a low calcemic
effect versus a potent antiproliferative, prodifferentiating, and/or
immune-modulatory function.In total, more than 3000 synthetic
vitamin D analogs were developed
by various pharmaceutical companies and academic research groups in
order to advance the biological properties of the natural compound
for a applications in the therapy of (i) hyperproliferative diseases,
such as different types of cancer, (ii) psoriasis, an autoimmune disease
of the skin,[16] or (iii) bone disorders,
such as osteoporosis.[17] However, so far
only a few vitamin D compounds made it to the market (Table ). In addition to vitamin D3 being extensively used as a nutritional supplement, the commercially
most successful vitamin D analog is calcipotriol (5),
which is topical agent in clinical use for the treatment of psoriasis.
Together with the compounds doxercalciferol (6), alfacalcidol
(7), tacalcitol (8), paricalcitol (9), oxacalcitriol (10), falecalcitriol (11), and eldecalcitol (12) it had been discussed
in previous reviews[18,19] (Figure ). In contrast, despite promising in vitro results,
analogs such as inecalcitol (13) or seocalcitol (14) were unsuccessful in phase II clinical trials of acute
myeloid leukemia (www.hybrigenics.com/news/articles/list/type/2) or pancreatic cancer,[20] respectively.
Interestingly, some immune-system-related vitamin D target genes,
such as cathelicidin antimicrobial peptide (CAMP)
and CD14 (encoding for a Toll-like receptor 4 co-receptor),
are very responsive,[21,22] while there are no vitamin D
target genes with comparable inducibility involved in the management
of cellular growth and differentiation. The failure of anticancer
trials and the success in the therapy of an immune disease as well
as prominent gene regulatory effects in immune cells suggest that
VDR ligands, in addition to bone-related functions, may rather have
a therapeutic potential in immune diseases than in cancer.
Table 1
Vitamin D Compounds on the Marketa
• Vitamin D3 (1, calciferol)
is used worldwide in the prevention of vitamin D deficiency and associated
diseases, such as rickets [Vigantol (Bayer), Delsterol (DuPont), Duphafral-D3 (multiple pharma companies), Lutavit D3 (BASF),
Vi-D3, Videkhol, Vigosan (multiple pharma companies)].
• Vitamin D2 (2, ergocalciferol)
is also used in the prevention of vitamin D deficiency and associated
diseases, such as rickets (marketed with different names by multiple
pharma companies).
• Calcidiol
(3, 25(OH)D3) is
used in the treatment of chronic hypocalcemia,
renal osteodystrophy [Calderol (Upjohn), Hidroferol (Faes Farma)],
rickets [Dedrogyl (Roussel), Hidroferol (Faes Farma)].
• Calcitriol [4, 1,25(OH)2D3]
is prescribed for renal osteodystrophy [Rocatrol (Roche), Calcijex
(Abbott)], osteoporosis [Rocatrol (Roche)] and psoriasis [Silkis (Galderma)].
• Calcipotriol [5, 22-ene-26,27-dehydro-1,25(OH)2D3] is used for psoriasis [Davionex (Leo Pharmaceuticals),
Dovonex (Warner Chilcott)].
• Doxercalciferol
[6, 1α(OH)D2, Hectorol (Bone Care International)]
is prescribed for secondary
hyperparathyrodism.
• Alfacalcidol
(7, 1α(OH)D3) is used for renal osteodystrophy
[Alfarol (Chugai Pharmaceutical),
One-Alpha (Leo Pharmaceuticals)], secondary hyper-parathyrodism [Alfarol
(Chugai Pharmaceutical)], osteoporosis [Alfarol (Chugai Pharmaceutical),
Alpha D3 (Teva Pharmaceuticals)] and rickets [Alfarol (Chugai
Pharmaceutical)].
• Tacalcitol
(8, 1α,24(OH)2D3) is prescribed
for psoriasis [Bonalfa (Teijin),
Curatoderm (Merck KGaA)].
• Paricalcitol
[9, 19-nor-1,25(OH)2D2, Zemplar,
(Abbott Laboratories)] is used for
secondary hyperparathyrodism.
• Oxacalcitriol
(10, 22-oxa-1,25(OH)2D3) is used
for secondary hyperparathyrodism and
psoriasis [Oxarol (Chugai Pharmaceuticals)] in Japan.
• Falecalcitriol [11, 1,25(OH)2-26,27-F6-D3] is prescribed for secondary
hyper-parathyrodism in Japan [Hornel (Taisho Pharmaceuticals and Sumitomo
Pharmaceuticals), Fulstan (Kissei Pharmaceuticals)].
• Eldecalcitol [12, 2α-(3-hydroxypropoxy)-1,25(OH)2D3] is prescribed for osteoporosis only in Japan
[Edirol (Chugai Pharmaceutical)].
Only a few vitamin
D compounds
have reached the market.[88,89] Their applications,
commercial name, and company are listed. The structures of the compounds
are shown in Figure .
Only a few vitamin
D compounds
have reached the market.[88,89] Their applications,
commercial name, and company are listed. The structures of the compounds
are shown in Figure .The majority of synthetic
VDR ligands are direct derivatives of 1,25(OH)D, but within
the past years an increasing number of
vitamin D mimics were published. 1,25(OH)D had been modified at
its side-chain, A-ring (often together with side-chain changes), triene
system, and C-ring. These modifications follow the strategy to increase
the VDR binding affinity while in parallel modulating the metabolic
stability of the molecules.[18] A reasonable
number of new vitamin D analogs have been published within the past
years and will be discussed in this review. Moreover, the number of
solved VDR crystal structures with synthetic ligands has significantly
grown.
Central Role of VDR in Vitamin D Signaling
VDR is the
only protein expressed by the human genome that is able
to bind 1,25(OH)D and its analogs at subnanomolar concentrations.[23] Thus, all physiological functions of vitamin
D compounds are mediated by VDR and its target genes.[24] The VDR gene is expressed most prominently
in intestine, kidneys, and bone, but in most of the other 400 human
tissues and cell types some VDR expression is found.[25] This means that not only tissues that relate
to calcium homeostasis and bone formation but also immune cells respond
to vitamin D.[26]VDR is an endocrine
receptor and member of the superfamily of nuclear
receptors; i.e., the mechanisms of its action are comparable to the
receptors for glucocorticoids and estrogen.[27] VDR’s ligand-binding domain (LBD) is structurally conserved
and comprises 11–15 α-helices, modestly varies between
solved crystal complexes, and depends on the folding of the intrinsically
disordered region between helices H1 and H3 and the presence of a
helix HX between helices H11 and H12[28,29] (Figure A). The lower part
of the LBD contains a ligand-binding pocket (LBP), which is a cavity
with a volume of ∼700 Å3 (with possible expansion
beyond 1000 Å3) being formed by some 40 mostly nonpolar
amino acids.[30] Three pairs of polar amino
acids within the LBP fix via hydrogen bonds each one of the three
OH groups (at C-1α, C-3β, and C-25) of 1,25(OH)D.
The 1α-OH group interacts with Y143 (helix H1) and S278 (helix
H5), the 3β-OH group contacts S237 (helix H3) and R274 (helix
H5), and the 25-OH group interferes with H305 (loop between helices
H6 and H7) and H397 (helix H11)[28] (Figure B).
Figure 2
1,25(OH)D complexed
to the VDR-LBD. The VDR-LBD has a
conserved 3D architecture, which is made of a three-layer α-helical
sandwich. In the lower part of the LBD the LBP is located. All the
helices are labeled from N-terminus toward C-terminus and numbered
in white color (A). Details on the LBP with bound 1,25(OH)D and
critical amino acids that provide anchoring contacts for the three
OH groups (B). Details on the conformation of the bound 1,25(OH)D molecule
with the annotated OH groups and highlights to its contribution of
its activity. The numbering of the carbons atoms is indicated (C).
The figure is based on the PDB code 1DB1.
1,25(OH)D complexed
to the VDR-LBD. The VDR-LBD has a
conserved 3D architecture, which is made of a three-layer α-helical
sandwich. In the lower part of the LBD the LBP is located. All the
helices are labeled from N-terminus toward C-terminus and numbered
in white color (A). Details on the LBP with bound 1,25(OH)D and
critical amino acids that provide anchoring contacts for the three
OH groups (B). Details on the conformation of the bound 1,25(OH)D molecule
with the annotated OH groups and highlights to its contribution of
its activity. The numbering of the carbons atoms is indicated (C).
The figure is based on the PDB code 1DB1.VDR ligands induce a conformational shift to the LBD, which
replaces
co-repressor proteins by coactivator proteins; i.e., ligand binding
induces a different protein–protein interaction profile of
the receptor.[31] VDR agonists cause an efficient
dissociation of co-repressors from the LBD and allow the specific
binding of coactivators and the mediator complex (Figure ). Coactivators also attract
chromatin modifying enzymes that write, erase, or read post-translational
marks of histones, such as acetyl and methyl groups, to histone proteins
of nucleosomes in the vicinity of genomic VDR binding sites.[32] Moreover, also members of chromatin remodeling
complexes interact in a ligand-dependent fashion with VDR and cause
a rearrangement of nucleosomes at vitamin D-sensitive chromatin regions.[33] These epigenetic changes allow looping of VDR-bound
enhancers toward accessible transcription start sites (TSSs) at hundreds
to thousands of loci throughout the human genome.[34] These enhancer-TSS assemblies are triggered by ligand-activated
VDR and finally result in an increase or decrease in the expression
of hundreds of primary vitamin D target genes (Figure ).
Figure 3
Vitamin D signaling. 25(OH)D is converted by the enzyme CYP27B1 to its biologically
most active
form 1,25(OH)D, which binds to the transcription factor VDR.
Upon binding of 1,25(OH)D or synthetic agonists, a conformational
change in the LBD is induced leading to cofactor exchanges shifting
the balance toward recruitment of coactivator proteins. Co-repressor
proteins dissociate from the VDR-RXR heterodimer. In parallel, the
mediator complex and chromatin modifying enzymes (readers, writers,
and erasers) are recruited in order to handle histone proteins of
local nucleosomes around genomic VDR binding sites. In addition, chromatin
remodeling complexes are recruited and rearrange nucleosomes at vitamin
D-sensitive chromatin regions. Altogether, these chances lead to looping
of the distal regulatory elements toward the basal transcriptional
machinery with RNA polymerase II and other nuclear adaptor proteins
initiating the start of 1,25(OH)D-dependent transcription from
hundreds to thousands of TSS regions throughout the whole human genome.
The ultimate outcome is the increase or decrease of the of primary
vitamin D target gene expression followed by changes of indicated
cellular functions.
Vitamin D signaling. 25(OH)D is converted by the enzyme CYP27B1 to its biologically
most active
form 1,25(OH)D, which binds to the transcription factor VDR.
Upon binding of 1,25(OH)D or synthetic agonists, a conformational
change in the LBD is induced leading to cofactor exchanges shifting
the balance toward recruitment of coactivator proteins. Co-repressor
proteins dissociate from the VDR-RXR heterodimer. In parallel, the
mediator complex and chromatin modifying enzymes (readers, writers,
and erasers) are recruited in order to handle histone proteins of
local nucleosomes around genomic VDR binding sites. In addition, chromatin
remodeling complexes are recruited and rearrange nucleosomes at vitamin
D-sensitive chromatin regions. Altogether, these chances lead to looping
of the distal regulatory elements toward the basal transcriptional
machinery with RNA polymerase II and other nuclear adaptor proteins
initiating the start of 1,25(OH)D-dependent transcription from
hundreds to thousands of TSS regions throughout the whole human genome.
The ultimate outcome is the increase or decrease of the of primary
vitamin D target gene expression followed by changes of indicated
cellular functions.The structure of the
humanVDR-LBD complexed with 1,25(OH)D was
solved in the year 2000.[28] Since then altogether
143 human, rat, and zebrafishVDR-LBDs have been crystallized with
a large number of synthetic analogs[35] (Table S1). In general, the analogs behave like 1,25(OH)D by stabilizing the LBD in more or less the same conformation,
since the three OH groups of each vitamin D compound take up a nearly
identical position. This suggests that there is only one agonistic
conformation of the LBD for which the interaction between the ligand’s
25-OH group and the LBP amino acids H305 and H397 are most important
(Figure C).On the basis of the vitamin D analog’s chemical modification,
all solved VDR-ligand-complexes can be divided to the six groups:
(i) A-ring modifications, (ii) side-chain modifications, (iii) triene
system modifications, (iv) combined A-ring and side-chain modification,
(v) modifications in the CD-ring, and (vi) nonsteroidal analogs. All
modifications aim to either (i) maintain the three anchoring OH groups
at the same position as in 1,25(OH)D and/or (ii) fill the
LBP most efficiently in order to form additional hydrogen network
and/or hydrophobic contacts. More variant modifications of 1,25(OH)D aim
to alter the ligand conformation or to bounce the shape of the LBP
by adding an additional side-chain at positions C-20 or C-22. Moreover,
de novo designed nonsteroidal compounds carry modifications, such
as the exchange the classical secosteroid ring structure by rings
with aromatic character. The aim with these molecules is to maintain
the hydrophobic interactions with amino acid residues lining the inner
surface of the LBP as well as to increase the stacking interaction
with aromatic amino acid residues.In this review we discuss
different classes of vitamin D analogs
and, where applicable, provide molecular understanding from VDR crystal
structures.
Side-Chain Modifications
The first locked side-chain
vitamin D analogs nor-21-20(22),23(24)-diyn-1,25(OH)2D3 (15), nor-21,23,24,25,26,27-20(22)-yn-22-(3-hydroxyphenyl)-1,25(OH)2D3 (16a), nor-21,23,24,25,26,27-20(22)-yn-22-[3-(hydroxymethyl)phenyl]-1,25(OH)2D3 (16b), and nor-21,23,24,25,26,27-20(22)-yn-22-[4-(hydroxymethyl)phenyl]-1,25(OH)2D3 (16c) have been synthesized by
convergent route through a Wittig–Horner approach starting
from Inhoffen–Lythgoe diol[36] (Figure ). These analogs
lead to significant activation of VDR-dependent transcription in comparison
to 1,25(OH). An unique structural
modification on the C-22-diyne analog, a C-17-methyl substitution,
was provided through a vinyl(pinacolo)boronate approach and
resulted in the C-17-methyl-substituted vitamin D analogs nor-21-20(22),23(24)-diyn-17-methyl-1,25(OH)2D3 (17a) and nor-21-20(22),23(24)-diyn-17-methyl-26,26,26,27,27,27-hexafluoro-1,25(OH)2D3 (17b).[37] The C-22-aromatic-substituted analogs are less potent in activating
VDR than the C-22-diyne isomers. The C-17-methyl analogs bind more
efficiently to VDR than 1,25(OH)D.
Figure 4
Side-chain-modified vitamin
D analogs. The table summarizes the
biological properties of the compounds: reference, 1,25(OH)D;
(=) similar value; (+) >10× higher; (++) >100× higher;
(+++)
>1000× higher; (−) >10× lower; VDR aff, VDR
affinity;
Prolif inh, proliferation inhibition; Transac act, VDR transactivation
activity; calcemia, [Ca2+] level changes in serum.
Side-chain-modified vitamin
D analogs. The table summarizes the
biological properties of the compounds: reference, 1,25(OH)D;
(=) similar value; (+) >10× higher; (++) >100× higher;
(+++)
>1000× higher; (−) >10× lower; VDR aff, VDR
affinity;
Prolif inh, proliferation inhibition; Transac act, VDR transactivation
activity; calcemia, [Ca2+] level changes in serum.The two side-chain analog Gemini
comprises an unaltered side-chain
of 1,25(OH)D and a second chain at C-20.[38,39] Although the volume of Gemini is increased by some 25%, it still
fits into VDR’s LBP.[30] One side-chain
of Gemini takes the same place as that of 1,25(OH)D, whereas
an extra subcavity opens within the LBP for the second side-chain.[40] The increase in transcriptional activity of
Gemini[41] motivated the preparation of Gemini-type
analogs with side-chains containing double or triple bonds and isohexafluoro-2-propanol
or isohexadeutero-2-propanol side-chain ends. Compounds 18–20 have been synthesized with both configurations
at C-20 by a convergent approach through Wittig–Horner coupling
starting from Inhoffen–Lythgoe diol.[42] (R)-Analogs showed higher antiproliferative potency
in MCF10CA1humanbreast cancer cells than their (S)-counterparts, and both were 100–1000 times more potent than 1,25(OH)D. Furthermore, both configurations of the Gemini derivatives
are also more potent than 1,25(OH)D in inducing the differentiation
of NB4 humanleukemia cells. Thus, Gemini compounds have enhanced
potency in inhibiting proliferation and inducing differentiation with
reduced induction of hypercalcemia when compared to 1,25(OH)D.
Moreover, C-20 methyl-substituted Gemini analogs (21–23) are also potent in the inhibition of HL-60humanleukemia
cell proliferation and the induction of CAMP gene
expression.[43]1α-Hydroxy-25,26,27-trinor-24-o-carboranyl-vitamin
D3 (1,25cD, 24, Figure ) is a rather new vitamin D analog, in which an o-carborane moiety replaces the 25-OH group.[44] Despite the lack of this critical group, 1,25cD is as effective as 1,25(OH)D in inhibiting
the growth of MCF-7humanbreast cancer cells and in inducing the
differentiation of HaCaThuman keratinocytes. VDR binds 1,25cD 2 times tighter than 1,25(OH)D and
is equally potent as the natural hormone in inducing reporter gene
activity while not showing adverse calcemic effects. Moreover, like
most other vitamin D analogs, the conformation of the complex of 1,25cD with VDR’s LBD is highly
similar to that of 1,25(OH)D; i.e. the protein shows the same
topology. Nevertheless, the loop between helices H6 and H7, which
is a critical region for the activation of the receptor, and the last
part of helix H11 show shifts by 0.6 Å. The carborane side-chain
is 2.4 Å longer than that of 1,25(OH)D, but it is
hydrophobic and therefore favors the interaction with hydrophobic
amino acid in this part of the VDR-LBP. This compensates for the loss
of the 25-OH group (Figure A). Thus, the collection of small changes stabilizes helices
H3, H11, and H12 and overall causes higher stability of VDR’s
LBD.
Figure 5
Structure–function relationship of VDR ligands (I). The
carborane group of 1,25cD creates
additional hydrophobic interactions that compensate for the loss of
the 25-OH group. All residues that have conserved interactions are
shown in gray (top). Detailed interaction with residues based on PDB
code structures 2HC4 (1,25(OH)D) and 5E7V (1,25cD). The
displayed interactions are identified under cutoff 3.5 Å (A).
Destabilization of the VDR-LBD upon binding of 23,36-lactone analogs.
Representation of crystal structure b-factors using
structures PDB codes 1RK3 (1,25(OH)D, left) and 3A2H (TEI-9647, right). Regions with the highest b-factors are highlighted in red and they are helices H9–10
that may affect heterodimerization with RXR, helix H11 affecting the
position of helix H12, and the coactivator peptide showing very high b-factors overall. The most stabile part of the VDR is shown
in blue through green, yellow and red monitoring the highest b-factor values (B). Structural implication of 22S-alkyl-2-methylene-19-nor-1,25(OH) binding. The position of
the helix H12 takes the same conformation in both 22S-alkyl-2-methylene-19-nor-1,25(OH) and 1,25(OH)D.
Many residues around the two aliphatic chains move or rotate, such
as H301 (loop helices H6/7), H393 (helix H11), or F418 (helix H12).
Structural elements from 22S-alkyl-2-methylene-19-nor-1,25(OH)2D3 (PDB code 2ZXM) and 1,25(OH)D (PDB code 1RK3) complexes are highlighted
in green and white color, respectively (C).
Structure–function relationship of VDR ligands (I). The
carborane group of 1,25cD creates
additional hydrophobic interactions that compensate for the loss of
the 25-OH group. All residues that have conserved interactions are
shown in gray (top). Detailed interaction with residues based on PDB
code structures 2HC4 (1,25(OH)D) and 5E7V (1,25cD). The
displayed interactions are identified under cutoff 3.5 Å (A).
Destabilization of the VDR-LBD upon binding of 23,36-lactone analogs.
Representation of crystal structure b-factors using
structures PDB codes 1RK3 (1,25(OH)D, left) and 3A2H (TEI-9647, right). Regions with the highest b-factors are highlighted in red and they are helices H9–10
that may affect heterodimerization with RXR, helix H11 affecting the
position of helix H12, and the coactivator peptide showing very high b-factors overall. The most stabile part of the VDR is shown
in blue through green, yellow and red monitoring the highest b-factor values (B). Structural implication of 22S-alkyl-2-methylene-19-nor-1,25(OH) binding. The position of
the helix H12 takes the same conformation in both 22S-alkyl-2-methylene-19-nor-1,25(OH) and 1,25(OH)D.
Many residues around the two aliphatic chains move or rotate, such
as H301 (loop helices H6/7), H393 (helix H11), or F418 (helix H12).
Structural elements from 22S-alkyl-2-methylene-19-nor-1,25(OH)2D3 (PDB code 2ZXM) and 1,25(OH)D (PDB code 1RK3) complexes are highlighted
in green and white color, respectively (C).
A-Ring Modification
The biological profiles of the C-2-substituted
vitamin D analogs
2-(3′-hydroxypropyl)-1,25(OH)2D3 (25), 2-butyl-1,25(OH)2D3 (26), 2-(4′-hydroxybutyl)-1,25(OH)2D3 (27), 2-(2′-hydroxyethoxy)-1,25(OH)2D3 (28), 2-(3′-hydroxypropoxy)-1,25(OH)2D3 (29), and 2-(4′-hydroxybutoxy)-1,25(OH)2D3 (30) (Figure ) indicated that C-2β-substituted analogs
have higher affinity for the serum vitamin D binding protein (DBP)
and lower affinity for VDR but are superior to C-2α analogs
in reporter gene assays.[45]
Figure 6
Vitamin D analogs with
A-ring modifications. The table summarizes
the biological properties of the compounds: reference, 1,25(OH)D;
(=) similar value; (+) >10× higher; (−) >10×
lower;
(--), >100× lower; VDR aff, VDR affinity; 24OH trans, CYP24A1 transactivation activity; HL60 diff, HL-60 cell
differentiation induction.
Vitamin D analogs with
A-ring modifications. The table summarizes
the biological properties of the compounds: reference, 1,25(OH)D;
(=) similar value; (+) >10× higher; (−) >10×
lower;
(--), >100× lower; VDR aff, VDR affinity; 24OH trans, CYP24A1 transactivation activity; HL60 diff, HL-60 cell
differentiation induction.The analog 2-(3′-hydroxypropyl)-1α-methyl-25(OH)2D3 (32) was synthesized through a
Pd-catalyzed ring-closure of enyne, and coupling with vinyl bromide
and showed a 2-fold higher potency than 1,25(OH)D in reporter
gene assays.[46] Interestingly, when VDR’s
amino acid R274, which contacts the 1α-OH group of the ligand
(Figure ), is mutated
to a hydrophobic residue (R274L), the compound is even 7 times more
potent than the natural hormone, suggesting that the 1α-methyl
group is stabilized primarily by hydrophobic interactions.The
compounds 1α,4α,25(OH)3D3 (33a) and 1α,4β,25(OH)3D3 (33b) were created through a Pd-catalyzed ring-closure
and coupling and showed lower affinity for VDR than 1,25(OH)D.[47] However, the 4β-analog (33b) displays higher VDR affinity and potency in reporter gene assays
than the 4α-compound (33a).The analogs 2-methylene-25-(OH)D3 (34a)
and 2-methylen-20-epi-25-(OH)D3 (34b) belong
to the family of the potent lead compound 2-methylene-1,25(OH)2D3 (35, 2MD) and were
synthesized through a Pd-catalyzed coupling between an enol triflate
and an enyne.[48] These molecules are defined
by the relocation of the exocyclic methylene group from C-10 to C-2
and the inversion of the C-20 configuration. Compound 34a shows lower affinity for VDR than 1,25(OH)D, lower potency
in inducing HL-60 cell differentiation and in reporter gene assays,
while compound 34b displays the same affinity for VDR
as 1,25(OH)D, higher potency in HL-60 cell differentiation
induction, and lower activity in reporter gene assays.
Triene System
Modifications
The compounds PRI-1731 (36), PRI-1732
(37), PRI-1733 (38), and PRI-1734 (39) represent
a series of vitamin D analogs with a branched side-chain (E)-stereochemistry at the C-5/C-6 double bond, both configurations
at C-24 and a C-22/C-23 double bond or an OH group at C-22[49,50] (Figure ). They
have moderate prodifferentiating activities on HL-60 cells and their
maximal inhibition of proliferation ranged from 10% to 15% of that
for 1,25(OH)D and 20–30% of that for 1,25(OH)2D2.
Figure 7
Triene system modified vitamin D analogs.
Triene system modified vitamin D analogs.
Side-Chain and A-Ring Modifications
25-Dehydro-1α-hydroxy-vitamin D3-26,23 lactones
with double modifications of C-24 and C-2α were synthesized
via a convergent approach by Pd-catalyzed ring closure of a enyne
and subsequent coupling with a functionalized vinyl bromide.[51,52] Numerous analogs have been synthesized with variations in their
C-23 configuration, C-24 mono- or disubstitution [H, Me, Et, c-Pr, n-Pr, n-Bu, i-Bu (40, 41, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72)] and C-2α substitution
[H, Me, CH2CH2CH2OH, OCH2CH2CH2OH, (42–47, 49, 51, 53, 55, 57, 59, 61, 63, 65, 67, 69, 71, 73)] (Figure ). The principal characteristic of these analogs is their
antagonist activity, probably due to locking the VDR-LBD in a conformation
where it does not effectively interact with coactivator proteins.
This can be seen also from the values of the β-factors found
in the crystal structure (PDB code 3A2H) of the lactone analog TEI-9647, where
the coactivator peptide shows very high values compared to 1,25(OH)D.
In addition, helices H9 and 10 as well as H11 and to some extent H12
show higher fluctuation leading to overall destabilization of the
LBD (Figure B). Structure–activity
relationship studies demonstrated that the exomethylene group of the
lactone is indispensable, the C-23S configuration
provides higher activity, and an appropriate combination of C-24 and
C-2α substitution obtains the highest antagonist potency.
Figure 8
Vitamin D analogs
with side-chain and A-ring modifications (I).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (−) >10×
lower;
(--) >100× lower; VDR aff, VDR affinity; Antag act, antagonistic
activity.
Vitamin D analogs
with side-chain and A-ring modifications (I).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (−) >10×
lower;
(--) >100× lower; VDR aff, VDR affinity; Antag act, antagonistic
activity.19-nor (74) and 1α-F
(75) Gemini
analogs containing triple bonds and isohexafluoro-2-propanol or isohexadeutero-2-propanol
side-chain end groups[42] (Figure ) were synthesized. Again (R)-analogs are more potent in inhibiting MCF10CA1 cell proliferation
than their (S)-counterparts. Both isomers are active
already at 100–1000 times lower concentrations than 1,25(OH)D.
In both configurations the Gemini analogs are equally potent to 1,25(OH)D in inducing NB4 cell differentiation but are less
calcemic than the natural hormone.
Figure 9
Vitamin D analogs with side-chain and
A-ring modifications (II).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (+++) >1000×
higher;
(−) >10× lower; (--) >100× lower; VDR aff,
VDR affinity;
MCF10 prol, MCF10 cell proliferation inhibition; NB4 diff, NB4 cell
differentiation induction; MG63 trans, MG63 cell transactivation activity;
U963 prol, U963 cell proliferation inhibition; HL60 diff, HL-60 cell
differentiation induction.
Vitamin D analogs with side-chain and
A-ring modifications (II).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (+++) >1000×
higher;
(−) >10× lower; (--) >100× lower; VDR aff,
VDR affinity;
MCF10 prol, MCF10 cell proliferation inhibition; NB4 diff, NB4 cell
differentiation induction; MG63 trans, MG63 cell transactivation activity;
U963 prol, U963 cell proliferation inhibition; HL60 diff, HL-60 cell
differentiation induction.A series of 2-methylene-19-norvitamin D analogs with or
without
C-22S alkyl substitution, such as 2-methylene-19,25,26,27-tetranor-vitamin
D3 (76), 2-methylene-19,25-dinor-vitamin D3 (77), 2-methylene-19,26,27-trinor-vitamin D3 (78), and 2-methylene-19-nor-vitamin D3 (79) and their C-22S alkyl derivatives
(a, R = H; b, R = Et; c, R
= Bu) have been prepared and biologically tested.[53] The side-chain modifications in 76, 77, and 78 reduce the VDR binding affinity 10-fold
compared to 1,25(OH)D. Interestingly, an increasing size of the
C-22 substituent in 2-methylene-19-nor-vitamin D3 (79) results in a decreased VDR binding affinity compared to 1,25(OH)D. Compounds with a normal side-chain (79a, 79b, and 79c) show strong activation
in reporter gene assays and compounds without C-22 substitution (76a, 77a, 78a, and 79a) even full agonist activity. In contrast, C-22S butyl-substituted molecules (76c, 76c, 78c, and 79c) present little transactivation
potency, while C-22S ethyl-substituted compounds
(76b, 77b, 78b, and 79b) display intermediate activity. Moreover, the analogs 76a, 77a, 78a, and 79a induce
the recruitment of the VDR partner receptor retinoid X receptor (RXR, Figure ) and of a coactivator
peptide in a concentration dependent manner, while C-22S-substituted compounds cause only moderate effects.VDR-LBD
crystal structures complexed with further 22S-alkyl-2-methylene-19-nor-1,25(OH)2D3 derivatives
(80–83)[54] confirmed that the compounds trigger the creation of an extra cavity
of the LBP by rotating L305 about 27° outward, in order to shelter
the butyl group (Figure C). Ligands act as VDR antagonists when they do not interact with
the C-terminal helix H12 of the receptor. Interestingly even though
the position of helix H12 is maintained in the agonistic position,
most likely forced by the presence of the coactivator peptide, there
is a shift or rotation of multiple residues away from the 22-butyl
analog. These changes weaken the interaction with H301 (loop H6/7),
H393 (H11), or F418 (H12) and destabilize this region of the LBD (Figure C). Interestingly,
in the presence of a coactivator peptide some of the antagonistic
22-butyl analogs take the agonistic conformation. Whether this is
a technical artifact of the crystallization or has a physiological
meaning, such as sensing of cofactor balance in the cellular context,
needs to be clarified.20-epi-Eldecalcitol (84),
a 20-epi derivative of the
antiosteoporotic drug eldecalcitol (12) (Table and Figure ), was synthesized through a convergent approach
by Pd-catalyzed ring-closure of an enyne and coupling with vinyl bromide.[55] Since 20-epi-1,25(OH)2D3, a diasteromer of 1,25(OH)D possessing an inverted C-21
methyl-substituent at C-20, shows enhanced biological activities compared
to 1,25(OH)D, compound 84 displays a 50-fold
increased inhibition of U937humanleukemia cell proliferation.[56]Since the presence of a 1α-OH group
in 1,25(OH)D is
crucial for VDR binding, its replacement with a 1β-OH group
[1β,25(OH)2D3, 86] causes
loss of physiological activity[57] (Figure ). Replacing the
1α-OH group with one fluor atom [1α-F,25(OH)2D3, 87] also markedly diminishes biological
activity,[58] while a compound with each
a fluorine atom at C-1 and C-25
[1,25(F)2(OH)2D3, 88] is devoid of all activity.[59] Interestingly,
the 3-OH group is not necessary if the 1α-OH group is already
in position, but the lack of the 3-OH group [1α,25(OH)2-3-deoxy-D3, 89] reduces the biological activity.[60,61] Additional methyl groups at C-1β [1β-methyl-1,25(OH)2D3, 90] and C-3α [3α-methyl-1,25(OH)2D3, 91] significantly reduce VDR binding
affinity. Switching the 3-OH group from β to α position
[3-epi-1,25(OH)2D3, 92] causes
a drastic reduction of physiological activity.[62] In fact, compound 92 is an intermediate of 1,25(OH)D degradation displaying lower VDR binding affinity
and lower calcemic effects compared to 1,25(OH)D. Despite its
decreased potency, the in vivo action of compound 92 is
tissue-specific.
Figure 10
Vitamin D analogs with side-chain and A-ring modifications
(III).
Vitamin D analogs with side-chain and A-ring modifications
(III).Taken together, most modifications
of the A-ring result in decreased
biological activity except for those modified at C-2. Therefore, a
large number of C-2-substituted vitamin D analogs have been synthesized
and were studied intensively for their biological activity. 2α-Substitutions
[2α-methyl-1,25(OH)2D3 (93)] are more potent than 2β-substitutions [2β-methyl-1,25(OH)2D3 (92)].[63] Elongation of the C-2-alkyl group [2α-ethyl-1,25(OH)2D3 (94) and 2α-propyl-1,25(OH)2D3 (95)] reduces VDR binding affinity
and biological potency, but ω-hydroxylation restores the activity.[64] 2α-Methyl-1,25(OH)2D3 (93) is twice as calcemic as 1,25(OH)D. In combination
with 20-epimerization [2α-methyl-20-epi-1,25(OH)2D3] VDR binding affinity increases even 12-fold.[63] 2α-(3′-Hydroxypropyl)-1,25(OH)2D3 (97) has a 3-fold increased VDR
binding affinity than 1,25(OH)D, while 2β-(3′-hydroxypropyl)-1,25(OH)2D3 (98) is 1.4 times more potent.
Terminal hydroxylation of 2α- and 2β-propoxy groups at
C-2, 2α-hydroxypropoxy-1,25(OH)2D3 (99) and 2β-hydroxypropoxy-1,25(OH)2D3 (100) also increases the VDR binding potential.19-nor-Vitamin D analogs are known to be devoid of hypercalcemic
and hyperphosphatemic effects.[65,66] For example, 19-nor-1,25(OH)2D3 (101) has a 5 times reduced the
VDR binding affinity compared to 1,25(OH)D paired with low or
no bone calcification activity, while 19-nor-1,25(OH)2D2 (paricalcitol, 9, Figure ) has similar affinity as the natural hormone.
Selected modifications at the C-2 position of 19-nor-vitamin D analogs
are more potent inducers of gene activity. 2β-(3′-Hydroxypropoxy)-19-nor-1,25(OH)2D3 (102) and 2α-(3′-hydroxypropoxy)-19-nor-1,25(OH)2D3 (103) have reduced potency in bone
and intestine.[67] 2-Methylene-19-nor-20-epi-1,25(OH)2D3 (2MD, 35) shows VDR
binding affinity comparable to 1,25(OH)D but a 100 times enhanced
ability to mobilize calcium from bone.[68] Moreover, 2MD is 10 times more potent than 1,25(OH)D in
activating CYP24A1 gene activity and inducing HL-60
cell differentiation. Analogs of 2MD with a shortened
side-chain, such as 2MP (105) and 2MbisP (106) are able to reduce parathyroid hormone
(PTH) production.[69]The compound
19-nor-1α,2β,25(OH)3D3 (107) is as potent as 1,25(OH)D in intestinal
calcium transport, while its epimer 19-nor-1α,2α,25(OH)3D3 (108) possesses less activity.[70] Importantly, both compounds are not calcemic.
Compound 107 has higher VDR binding affinity than 108 and is more potent in inhibiting MCF-7 cell proliferation.
When the 2-ethylidene group is in E-configuration
(109), VDR binding affinity is 2.4-fold increased. Moreover,
a 3′-hydroxypropylidene group at C-2 in E-configuration
resulted in the potent compounds AGR (110) and 1AGS (111), which seem to be intestine-selective.[60]2α-(3′-Hydroxypropyl)-19-nor-1,25(OH)2D3 (112), which is modified at both
C-2 and C-10,
shows a similar VDR binding affinity as 1,25(OH)D, displays
a 36-fold higher potential in inducing HL-60 cell differentiation,
and has a 500-fold higher antiproliferative potency in PZ-HPV-7 prostate
cells. Its epimer 2β-(3′-hydroxypropyl)-19-nor-1,25(OH)2D3 (113) has lower VDR binding and
prodifferentiation activity, but it is as potent as 110 in inhibiting prostate cell proliferation.[70,71]Promising analogs with three different alterations in the
vitamin
D skeleton (the A-ring, the side-chain, and the CD-ring) are 1β-hydroxymethyl-16-ene-24,24-F2-26,27-bishomo-25(OH)2D3 (QW-1624-F2-2, 114)[72] and 1α-fluor-16-ene-20-epi-23-ene-26,27-bishomo-25(OH)2D3 (Ro-26.9228, 115).[73] In a skin cancer model compound 114 inhibits
progression and molecule 115 restores bone loss, while
both are not hypercalcemic.Six new derivatives of compound 104 have been prepared
by a convergent synthesis using the Wittig–Horner approach[74] in order to evaluate the influence of methyl
groups at C-22 on biological activity (Figure ). Single methylation of the (20R)-25-hydroxylated side-chain (117) did not
change the VDR binding affinity in comparison to the parent compound 104. However, the addition of a 22-methyl group to the (20S)-25-hydroxylated side-chain (118) caused
a much stronger effect. The 22R-compound 118a has a 2.5 times higher VDR binding affinity than 104 and is 250-fold more potent than its 22-epimer 118b. The prodifferentiation potential of an analog with a 22S-methyl group in the “natural” side-chain
(20R) (116a) is 10-fold higher than
that of its 22-epimer (116b), whereas in the case of
“unnatural” 20S-compound the 22R-epimer (117a) is 1000 times more potent than
its 22-epimer (117b) and 4-fold more potent than the
parent compound 104. When two methyl groups were introduced
at C-22, such as in the 20R-compound (118a) and the 20S-compound (118b), VDR
binding affinity is increased compared to their parent molecules.
Figure 11
Vitamin
D analogs with side-chain and A-ring modifications (IV).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (+++) >1000×
higher;
(−) >10× lower; (--) >100× lower; VDR aff,
VDR affinity;
24OH trans, CYP24A1 transactivation activity; HL60
diff, HL-60 cell differentiation induction.
Vitamin
D analogs with side-chain and A-ring modifications (IV).
The table summarizes the biological properties of the compounds: reference, 1,25(OH); (=) similar value; (+)
>10× higher; (++) >100× higher; (+++) >1000×
higher;
(−) >10× lower; (--) >100× lower; VDR aff,
VDR affinity;
24OH trans, CYP24A1 transactivation activity; HL60
diff, HL-60 cell differentiation induction.C-20-isomers of 25(OH)-2-methylene-vitamin D3 and
3-desoxy-1α,25(OH)2-2-methylene-vitamin D3 (117–120) were synthesized through
a convergent approach using
a Sonorogashira coupling[75] (Figure ). The biological activities
of compounds 119–122 are clearly
lower than those of the parent compound 104. With the
exception of the 1α-hydroxylated compounds they were also less
active than 1,25(OH)D. Analogs without a 1α-OH group show
lower VDR binding affinity, HL-60 cell prodifferentiation activity,
and CYP24A1 activation than those hydroxylated at
C-1. The addition of the 10-exo-methylene group improved the in vitro
activity of the (20S)-1-desoxy compounds. In contrast,
in the (20S)-series only VDR binding affinity augmented.
The presence of the 2-exomethylene group resulted in enhanced intestinal
calcium transport compared to 1,25(OH)D, but bone calcium mobilization
was 10-fold decreased in the (20R)-series.A large structure–function analysis of 39 Gemini derivatives[43] showed five compounds (123–127) with enhanced antiproliferative activity (Figure ). Compound 127 was stronger than 1,25(OH)D in inhibiting cancer cell
growth, while both were equipotent in their calcemic effect.
Figure 12
Vitamin D
analogs with side-chain and A-ring modifications (V).
The table summarizes the biological properties of the compounds: reference, 1,25(OH)D; (=) similar value; (+) >10× higher; (++)
>100×
higher; (−) >10× lower; (--) >100× lower; VDR
aff,
VDR affinity; HL60 diff, HL-60 cell differentiation induction.
Vitamin D
analogs with side-chain and A-ring modifications (V).
The table summarizes the biological properties of the compounds: reference, 1,25(OH)D; (=) similar value; (+) >10× higher; (++)
>100×
higher; (−) >10× lower; (--) >100× lower; VDR
aff,
VDR affinity; HL60 diff, HL-60 cell differentiation induction.The Sonogashira approach was used
to synthesize novel 14-epi derivatives
of 19-nor-1α,25(OH)2-previtamin D3 (132) and 19-nor-1α,25(OH)2-tachysterol D3 (135).[76] Dienynic
compounds (129–131) showed moderate
VDR binding affinity, where the 2-methylene compound (129) has higher activity than the 2-methyl-substituted diastereomers 130 and 131. Previtamin D3 compounds
(132–134) showed low VDR binding
affinity. 14-epi-19-nor-tachysterol) D3 compounds displayed
higher VDR binding affinity, of which 2-methylene-14-epi-19-nor-tachysterol
D3 (137) is most potent. Crystal structure
analysis indicated unique binding conformations. The binding of both
epimers, 14-epi-2α-methyl- (PDB code 3AUQ) and 14-epi-2β-methyl-1,25(OH)2-6,7-dehydro-19-norvitamin D3 (PDB code 3AUR) is very similar
in maintaining the position of the anchoring OH groups seen from the 1,25(OH)D complex (PDB code 1DB1). However, the modification between C-6
and C-7 provides rigidity for this region introducing an unforeseen
compensation in flexibility for the CD rings. Compared to their more
planar conformation in 1,25(OH)D, here they take a reverse
V-letter conformation such as by the bending of the C ring about 9°
downward. For the 2β-methyl isomer the residue L227 is closer
to the ligand under 3.5 Å cutoff but under similar cutoff W286
seems to be closer to 1,25(OH)D, which is due to more planar
conformation of the CD-rings (Figure A).
Figure 13
Structure–function relationship of various VDR
ligands (II).
The binding of 14-epi-2α-methyl- and 14-epi-2β-methyl-1,25(OH)-6,7-dehydro-19-norvitamin D3. The overall spatial conservation of the OH groups is maintained,
but the CD-ring structure for the epimers shows higher flexibility
by changing the more planar conformation in 1,25(OH)D to reverse
V-letter shape. This is largely due to the bending of the C-ring downward.
The other notable changes involve the proximal location of L227 in
2β-methyl epimer and W286 for 1,25(OH)D under 3.5 Å
cutoff. Structural elements from 14-epi-2α-methyl- (PDB code 3AUQ), 14-epi-2β-methyl-1,25(OH)2-6,7-dehydro-19-norvitamin D3 (PDB code 3AUR), and 1,25(OH)D (PDB
code 1DB1) complexes
are highlighted in green, blue, and white color, respectively (A).
Possible mechanism governing the potency of fluorinated analogs. The
effect of a fluorinated functional group is illustrated on CF3 group in comparison with CH3 group located at
the terminal carbons C-26 and C-27 of the ligand’s aliphatic
chain. The high electronegativity of the fluor atom has a pulling
effect for the hydrophobic residues located in the proximity of the
functional group (bottom), which cannot be seen for the 1,25(OH)D under
the same 3.5 Å cutoff (top). However, the hydrogen bonds between
the conserved histidines and the 25-OH group are maintained in both
scenarios. The positions of the CF3 groups show a moderate
opening about 5° with maintained distance between carbon C-26
and C-27. These changes have effect on the LBP, which is a bit smaller
(middle panel) in the presence of CF functional
groups (B). Structural elements for the CF and CH groups are highlighted in orange
and white color, respectively.
Structure–function relationship of various VDR
ligands (II).
The binding of 14-epi-2α-methyl- and 14-epi-2β-methyl-1,25(OH)-6,7-dehydro-19-norvitamin D3. The overall spatial conservation of the OH groups is maintained,
but the CD-ring structure for the epimers shows higher flexibility
by changing the more planar conformation in 1,25(OH)D to reverse
V-letter shape. This is largely due to the bending of the C-ring downward.
The other notable changes involve the proximal location of L227 in
2β-methyl epimer and W286 for 1,25(OH)D under 3.5 Å
cutoff. Structural elements from 14-epi-2α-methyl- (PDB code 3AUQ), 14-epi-2β-methyl-1,25(OH)2-6,7-dehydro-19-norvitamin D3 (PDB code 3AUR), and 1,25(OH)D (PDB
code 1DB1) complexes
are highlighted in green, blue, and white color, respectively (A).
Possible mechanism governing the potency of fluorinated analogs. The
effect of a fluorinated functional group is illustrated on CF3 group in comparison with CH3 group located at
the terminal carbons C-26 and C-27 of the ligand’s aliphatic
chain. The high electronegativity of the fluor atom has a pulling
effect for the hydrophobic residues located in the proximity of the
functional group (bottom), which cannot be seen for the 1,25(OH)D under
the same 3.5 Å cutoff (top). However, the hydrogen bonds between
the conserved histidines and the 25-OH group are maintained in both
scenarios. The positions of the CF3 groups show a moderate
opening about 5° with maintained distance between carbon C-26
and C-27. These changes have effect on the LBP, which is a bit smaller
(middle panel) in the presence of CF functional
groups (B). Structural elements for the CF and CH groups are highlighted in orange
and white color, respectively.
Side-Chain, D-Ring, and A-Ring Modifications
The synthesis
of 12 analogs (138–149) of 1α,25(OH)2-16-ene-20-cyclopropylvitamin D3 relied on Wittig–Horner
coupling[77] (Figure ). These compounds have an unsaturated D-ring
between C-16 and C-17
and a cyclopropyl group located at C-20. The structural diversity
on the side-chain covered triple CC bonds (138–144), double CC bonds (145–147) and single CC bonds (148 and 149) together
with the A-ring covered 1α,3β-dihydroxy (138, 143, 146, and 149), 19-nor
(139, 142, 145, and 148), 3-deoxy-1α-hydroxy (141), and 1α-fluor-3β-hydroxy
(140 and 144). The anti-inflammatory properties
of these compounds were studied via analyzing the inhibition of the
secretion of the cytokines interferon-γ (IFNG) and tumornecrosis
factor (TNF). Most of 16-ene-20-cyclopropyl analogs inhibited IFNG
with similar potency to 1,25(OH)D, but compound 149 was more potent. The inhibition of TNF showed wide differences,
some analogs (138, 140, 143–145) failed to induce TNF inhibition, whereas
analog 149 inhibited TNF more efficiently than 1,25(OH)D. The metabolism of 149 was studied and
the stable 24-oxo metabolite 150 accumulated during metabolism.
Compound 150 mediates similar induction of primary vitamin
D target genes as analog 149 but has a lower calcemic
activity.
Figure 14
A-ring, D-ring, and side-chain modified vitamin D analogs. The
table summarizes the biological properties of the compounds: reference, 1,25(OH)D; (=) similar value; (+) >10× higher; (+++)
>1000×
higher; (−) >10× lower; (--) >100× lower; MLR
IFN-γ,
INFG inhibition; LPS TNFα, TNF inhibition.
A-ring, D-ring, and side-chain modified vitamin D analogs. The
table summarizes the biological properties of the compounds: reference, 1,25(OH)D; (=) similar value; (+) >10× higher; (+++)
>1000×
higher; (−) >10× lower; (--) >100× lower; MLR
IFN-γ,
INFG inhibition; LPSTNFα, TNF inhibition.
Nonsteroidal VDR Ligands
The synthesis of nonsteroidal VDR
agonists containing a hydrophobic
1,12-dicarba-closo-dodecaborane (p-carborane) unit was achieved through bimolecular nucleophilic substitution[78] (Figure ). The carborane cage replaced the CD-rings of the
natural hormone exploiting the hydrophobicity of p-carborane. Despite their simple and flexible structure, the carborane-based
VDR ligands show moderate binding affinity for VDR compared to 1,25(OH)D. The analogs are flexible acyclic triols; i.e., they
lack an A-ring and conjugated triene structures. Their structures
shared a branched side-chain on a carboranecarbon, and in the other
carbon three different chains are bound either to 3-oxaheptan-5,7-diol
(151), 3-oxahexan-5,6-diol (152) or 4-oxaheptan-6,7-diol
(153). The flexibility of the diol is favorable for VDR
binding affinity, which, however, is more then 100 times lower than
for 1,25(OH)D. Nevertheless, these mimics are rather active
in inducing HL-60 cell differentiation [rac-151, 5%;
(S)-151, 8%; (R)-151, 2%; 152, 0.05%; 153, 0.001%)].
The S-isomers showed, compared to the R-enantiomer, higher prodifferentiation activity and VDR binding affinity.
Nonsteroidal
VDR ligands. The table summarizes the biological properties
of the compounds: reference, 1,25(OH)D; (=) similar value;
(+) >10× higher; (++) >100× higher; (+++) >1000×
higher;
(−) >10× lower; (--), >100× lower; (---), >1000×
lower; VDR aff, VDR affinity; calcemia, [Ca2+] level changes
in serum; 24OH trans, CYP24A1 transactivation activity;
HL60 diff, HL-60 cell differentiation induction; MCF7 pr, MCF7 proliferation
inhibition.LG190178 (154) is the first published
nonsteroidal vitamin D analog.[79] In general,
VDR ligands based on bisphenyl core compounds with γ-hydroxycarboxylic
acid moiety (155) show agonist activity. From compounds
with a fluorine-containing bisphenyl core[80] the hexafluoro analog (157) is 5 times more potent
in reporter gene assays than the parent compound (155), shows 2 times higher prodifferentiation activity, and is 7 times
more effective in inducing bone γ-carboxyglutamate protein (BGLAP) expression. Like in secosteroidal vitamin D analogs,
fluorination is an effective modification as shown by crystal structure
analysis of the VDR-LBD complexed with 155. Also in this
case helix H12 is stabilized in the agonistic position allowing interaction
with coactivator proteins. From physicochemical point of view the
fluorine atom’s ionic radius
is 100% larger than that of the hydrogen, the van der Waals radius
is only 27% larger. However, the high electronegativity of fluor has
a possible “pulling” effect for residues residing in
the nearest proximity of a fluorinated functional group. This can
be illustrated on the comparison of the aliphatic chain of the ligands
that have CH3 or CF3 functional groups at carbon
C-26 and C-27. The latter shows additional five hydrophobic residues
that cannot be seen for CH3 at the cutoff 3.5 Å (Figure B). The only maintained
interactions are with conserved histidine residues. In addition, the
possible reaction to the strong van der Waals forces from hydrophobic
residues is a moderate opening of the functional groups by 5°
with maintained distance between carbon C-26 and C-27 due to additional
twist in the absolute position of the C-25 carbon. These net effects
show also small variation the LBP size, which is slightly confined
in the presence of CF3 functional groups resulting in a
tighter packing of the cavity (Figure B).Nonsteroidal vitamin D mimics
with phenylpyrrolyl pentane skeletons
have been designed (159–165).[81,82] Among them, 159 shows clear antiproliferative effects
on MCF-7 cells. In order to improve the biological activity of compound 159, derivatives were designed comprising side-chains terminated
in a diethylcarbinol, hydrophilic groups or hydrophobic groups (160–165). The antiproliferative activities
of the compounds were tested in MCF-7 cells, PC3humanprostate cancer
cells, Caco2humancolon cancer cells, and HepG2humanliver cancer
cells. Compound 160b exhibits the best antiproliferative
activity, being more potent than the prototype compound 159 and 1,25(OH)D. Also the compounds 160a, 160c, 160d, 160f, 160g, 164b, and 165b show in all four model
systems better antiproliferative activities than 159 and 1,25(OH)D. The R2 substitutions at the pyrrole-ring
side-chains are crucial for the antiproliferative activity of the
compounds. Molecules with hydrophilic groups at the end of the pyrrole-ring
side-chain (160a, 160b, 160d, 160g, and 164b) are more potent than
those bearing hydrophobic groups (161a, 161b, 162a–d, 163a, and 164b). Moreover, compounds 160a, 160c, 160d, 160g, and 164b were
less cytotoxic than 159 and 1,25(OH)D. Compounds 160a–d, 164b, and 165b also display prodifferentiating activity. In reporter gene assays 164b is the most potent compound, whereas the transactivation
potential of 160b and 160g is comparable
to that of 1,25(OH)D.A novel class of analogs,[83] where the
C-ring and D-ring were replaced by an aromatic m-phenylene
D-ring and an alkyl chain, were synthesized based on the formation
of the triene system through a Pd-catalyzed ring-closure of an enol
trifate and a subsequent Suzuki–Miyaura reaction with appropriate
boronate in aqueous medium.[84] Compounds 166a–e efficiently induce the differentiation
of human keratinocytes and show antiproliferative activity in MCF-7,
PC-3, SKOV-3 (humanovary cancer), and HaCaT cells comparable to 1,25(OH)D. Compound 166a with the shortest chain
at C-8 is most active not only in antiproliferative tests but also
in reporter gene assays. Importantly, none of compounds 166a–e induce hypercalcemia. In a SCIDmice xenograph
model of aggressive MDA-MB-231humanbreast cancer cells compound 166a shows high efficacy for tumor growth inhibition and overall
survival.
Conclusions
This review demonstrated that clever and
relevant chemistry significantly
increased the number and variety of synthetic vitamin D analogs. Analog
design had advanced and led to functional molecules, such as the o-carborane compounds, that are devoid of a 25-OH group.
Moreover, there are now molecules that completely lack A- and/or CD-rings,
such as p-carborane compounds, but still interact
with VDR. Some of these nonsteroidal vitamin D analogs display high
activity in vitro in combination with low calcemic effects in vivo.
Thus, the area of nonsteroidal analogs and mimics is expected to further
rise in future.The assessment of the biological profile of
VDR ligands is still
primarily reduced to in vitro assays, such as VDR binding affinity,
reporter gene assays, and antiproliferative and prodifferentiation
measurements in different cancer cell lines. The variety in the assays
makes a direct comparison of the different types of vitamin D analogs
difficult. Moreover, a reliable extrapolation of the in vivo potential
of the compounds is impossible without changing to a different set
of assays, such as gene expression profiles in freshly isolated human
peripheral blood mononuclear cells.[85]Nowadays research on vitamin D analogs is nearly exclusively performed
in academia and many interesting approaches for optimizing the profile
of VDR ligands have not been explored to their limits. Accordingly,
a complete picture is still missing and there is potential for improvements.
The number of nearly 150 solved crystal structures of the VDR-LBD
complexed with synthetic ligands is impressive and demonstrates the
active interest of academia in understanding the molecular actions
of VDR agonists and antagonists.Unfortunately, failures of
clinical trails focused on cancer have
majorly dampened the interest of pharma industry in further developing
vitamin D compounds. Since the natural hormone 1,25(OH)D primarily
prevents bone- and immune-system-related diseases, the molecule and
it synthetic derivatives may not be perfect drugs for the therapy
of cancer. Nevertheless, calcipotriol-activated VDR in stroma of humanpancreatic tumors had been shown to markedly reduce markers of inflammation
and fibrosis in pancreatitis and humantumor stroma.[86] This suggests that vitamin D compounds rather affect immune
cells of the microenvironment of tumors than directly inhibiting the
proliferation of the cancer cells. In fact, to date, most genome-wide
data on the action of VDR and its ligands are available from cells
of the hematopoietic system.[87] This further
emphasizes the impact of vitamin D and VDR for innate and adaptive
immunity and suggests that these areas should be further explored
for a commercial application.
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