| Literature DB >> 35942177 |
Dheyaa Ahmed Ibrahim1, Dilovan Asaad Zebari2, Hussam J Mohammed3, Mazin Abed Mohammed4.
Abstract
Coronavirus disease 2019 (COVID-19) has attracted significant attention of researchers from various disciplines since the end of 2019. Although the global epidemic situation is stabilizing due to vaccination, new COVID-19 cases are constantly being discovered around the world. As a result, lung computed tomography (CT) examination, an aggregated identification technique, has been used to ameliorate diagnosis. It helps reveal missed diagnoses due to the ambiguity of nucleic acid polymerase chain reaction. Therefore, this study investigated how quickly and accurately hybrid deep learning (DL) methods can identify infected individuals with COVID-19 on the basis of their lung CT images. In addition, this study proposed a developed system to create a reliable COVID-19 prediction network using various layers starting with the segmentation of the lung CT scan image and ending with disease prediction. The initial step of the system starts with a proposed technique for lung segmentation that relies on a no-threshold histogram-based image segmentation method. Afterward, the GrabCut method was used as a post-segmentation method to enhance segmentation outcomes and avoid over-and under-segmentation problems. Then, three pre-trained models of standard DL methods, including Visual Geometry Group Network, convolutional deep belief network, and high-resolution network, were utilized to extract the most affective features from the segmented images that can help to identify COVID-19. These three described pre-trained models were combined as a new mechanism to increase the system's overall prediction capabilities. A publicly available dataset, namely, COVID-19 CT, was used to test the performance of the proposed model, which obtained a 95% accuracy rate. On the basis of comparison, the proposed model outperformed several state-of-the-art studies. Because of its effectiveness in accurately screening COVID-19 CT images, the developed model will potentially be valuable as an additional diagnostic tool for leading clinical professionals.Entities:
Keywords: COVID‐19 identification; CT scan images; deep learning models; feature fusion
Year: 2022 PMID: 35942177 PMCID: PMC9348188 DOI: 10.1111/exsy.13010
Source DB: PubMed Journal: Expert Syst ISSN: 0266-4720 Impact factor: 2.812
Presents most recent state‐of‐art works
| Ref. | Method | Dataset | Feature | Problem | Class | Results | Limitation |
|---|---|---|---|---|---|---|---|
| (Shi et al., | Infection size aware Random forest method | 2685 private |
Volume, number, histogram, and surface FS: LASSO | Classification of COVID‐19 from CT images | 2 | Ac = 87.9, Sn = 90.7, Sp = 83.3 | Follow‐up CT scan results were excluded, and clinical features associated with pneumonia were not taken into account. |
| Tang et al. ( | Random Forest model | 176 private | 30 quanti‐ tative | Severity assessment of COVID‐19 patients |
Ac = 0.875 TP = 0.933 TN = 0.74 | It was decided to use only two of the COVID‐19 severity categories (i.e., with binary categorization) rather than all four (i.e., mild, common, severe and critical) | |
| Barstugan et al. ( | SVM | 150 | GLCM, LDP, GLRLM, GLSZM, DWT | For the classification of COVID‐19 |
Ac = 99.68 Sn = 97.56 Sp = 99.68 Pre = 99.62 F1‐score = 98.58 | SVM cannot deal properly with huge datasets, and it struggled mightily when confronted with data that had more noise. | |
| Al‐Karawi et al. ( | SVM |
470 | Gabor | To differentiate between positive from negative cases | 2 |
Ac = 95.37, Sn = 95.99, Sp = 94.76 | – |
| Özkaya et al. ( | CNN with Fusion and Ranking method | 150 private | VGG‐16, GoogleNet and ResNet‐50 | Classification of COVID‐19 images | ‐‐‐ |
Ac = 98.27, Sn = 98.93, SP = 97.6 Pre = 97.63 F1‐score = 98.28 MCC = 96.54 | – |
| Alom et al. ( | Improved Inception Recurrent Residual Neural Network (IRRCNN) and NABLA‐3 network models | 420 CT publicly | – | For identification of COVID‐19 patients from X‐ray and CT images | 2 |
X‐ray Ac = 84.67 CT Ac = 98.78 | because of the dearth of labelled data for COVID‐19 lung segmentation in CT, the COVID‐Seg CT generates results that contain a small number of true positives |
| Wang et al. ( | DenseNet121‐FPN and COVID‐19Net | 5372 | DL feature | For COVID‐19 Diagnostic and Prognostic Analysis | 2 | Ac = 85, Sn = 79.35, Sp = 71.43 | diagnostic performance of the DL is low |
FIGURE 1The proposed architecture for COVID‐19 identification
FIGURE 2Chest CT scan samples from COVID‐19 datasets, first row (a) presents positive cases, while second row (b) presents negative cases
FIGURE 3Grab‐cut method to segment objects into ROI and unwanted objects (Basavaprasad & Hegadi, 2014)
FIGURE 4COVID‐19 CT scan images segmented using the proposed model
FIGURE 5The training of RBM method (Almanaseer et al., 2021)
FIGURE 6The training of DBN model (Almanaseer et al., 2021)
FIGURE 7Structure of CDBN model
Specific parameters of CDBN model
| Parameters | Input size |
|---|---|
| Input size | 128 × 128 |
| Number of layers | 2 |
| 1st layer of conv kernel | 7 × 7 [32 × 124 × 124] |
| Max pooling | 2 × 2 [32 × 62 × 62] |
| 2nd layer of conv kernel | 5 × 5 [64 × 58 × 58] |
| Max pooling | 2 × 2 [64 × 29 × 29] |
| 3rd layer of conv kernel | 6 × 6 [128 × 24 × 24] |
| Max pooling | 2 × 2 [128 × 12 × 12] |
| Batch size | 200 |
| Epoch | 20 |
| Learning rate | 0.001 |
FIGURE 8The HRNet model
FIGURE 9The VGGNet model
Specific parameters of CDBN model
| Parameter | Input value |
|---|---|
| Size of input image | 128 × 128 |
| Number of conv layers | 10 |
| Maxpooling layers | 5 |
| FC layers | 3 |
| Batch size | 150 |
| Number of epochs | 200 |
| Hidden layer size | 8–96 neurons |
| dropout | 0.1 |
| Learning rate | 0.0001 |
| Activation function | ReLu softmax |
| Loss function | Cross entr. |
| Optimizer | SGDM |
| Kernel size | 2 × 2 |
The decision level fusion for all possible cases
| Cases | CDBN | HRNet | VGGNet | Decision‐level fusion |
|---|---|---|---|---|
| Case 1 | Positive | Positive | Positive | Positive |
| Case 2 | Positive | Positive | Negative | Positive |
| Case 3 | Positive | Negative | Positive | Positive |
| Case 4 | Negative | Positive | Positive | Positive |
| Case 5 | Negative | Negative | Negative | Negative |
| Case 6 | Positive | Negative | Negative | Negative |
| Case 7 | Negative | Positive | Negative | Negative |
| Case 8 | Negative | Negative | Positive | Negative |
FIGURE 10Comparison the data of the sensitivity and specificity (Serrao et al., 2018)
Total number of dataset in training and testing after data augmentation
| COVID‐CT dataset | Original data | Original data and augmentation | Training | Testing |
|---|---|---|---|---|
| Positive cases | 349 | 1396 | 1116 | 280 |
| Negative CASES | 397 | 1588 | 1268 | 320 |
| Total | 746 | 2984 | 2384 | 600 |
FIGURE 11Segmentation steps of the proposed method: a) original image, b) segmented image, c) extracted ROI and d) the texture sign inside the ROI that can help to identify the positive COVID‐19 cases
The deep learning model compared to the proposed fusion model
| Whole data | COVID | Non‐COVID | Training‐COVID | Training non‐COVID | Testing‐COVID | Testing non‐COVID | CDBN | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AC | SN | SP | Precision | F‐score | ||||||||
| Original Data | 746 | 349 | 397 | 279 | 317 | 70 | 80 | 0.793 | 0.814 | 0.775 | 0.76 | 0.78 |
| Augmented Data | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 0.917 | 0.904 | 0.92 | 0.91 | 0.91 |
| Whole data | COVID | Non‐COVID | Training‐COVID | Training Non‐COVID | Testing‐COVID | Testing Non‐COVID |
| |||||
| AC | SN | SP | Precision | F‐Score | ||||||||
| Original Data | 746 | 349 | 397 | 279 | 317 | 70 | 80 | 0.78 | 0.78 | 0.78 | 0.76 | 0.77 |
| Augmented Data | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 0.915 | 0.92 | 0.90 | 0.89 | 0.91 |
| Whole data | COVID | Non‐COVID | Training‐COVID | Training Non‐COVID | Testing ‐COVID | Testing Non‐COVID |
| |||||
| AC | SN | SP | Precision | F‐Score | ||||||||
| Original Data | 746 | 349 | 397 | 279 | 317 | 70 | 80 | 0.69 | 0.72 | 0.66 | 0.65 | 0.68 |
| Augmented Data | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 0.88 | 0.88 | 0.88 | 0.86 | 0.87 |
| Whole data | COVID | Non‐COVID | Training‐COVID | Training Non‐COVID | Testing ‐COVID | Testing Non‐COVID |
| |||||
| AC | SN | SP | Precision | F‐Score | ||||||||
| Original Data | 746 | 349 | 397 | 279 | 317 | 70 | 80 | 0.82 | 0.82 | 0.82 | 0.80 | 0.81 |
| Augmented Data | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 |
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Obtained results‐based confusion matrix
| Model | Whole data | COVID | Non‐COVID | Training‐COVID | Training non‐COVID | Testing ‐COVID | Testing non‐COVID | TP | FN | TN | FP |
|---|---|---|---|---|---|---|---|---|---|---|---|
| CDBN | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 253 | 27 | 297 | 23 |
| HRNet | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 259 | 21 | 290 | 30 |
| VGGNet | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 249 | 31 | 282 | 38 |
| Proposed model | 2984 | 1396 | 1588 | 1116 | 1268 | 280 | 320 | 266 | 14 | 309 | 11 |
FIGURE 12The analysis of different deep learning and proposed fusion model using receiver operating characteristic (ROC)
Comparison between proposed model and recent state‐of‐art studies
| Study | Network | AC | SN | SP | Precision | F1‐score |
|---|---|---|---|---|---|---|
| (Mobiny et al., | DECAPS+Peekaboo | 87.6 | 91.5 | 85.2 | 84.3 | 87.1 |
| Pathak et al. ( | ResNet‐32 | 93.01 | 91.4 | 94.7 | 95.1 | ‐ |
| Dey et al. ( | Feature fusion +KNN | 87.75 | ‐ | ‐ | ‐ | ‐ |
| He et al. ( | DenseNet169 | 83 | ‐ | ‐ | ‐ | 81 |
| Mishra et al. ( | Decision function | 88.3 | ‐ | ‐ | ‐ | 86.7 |
| Saqib et al. ( | ResNet101 | 80.3 | 85.7 | 78.2 | 81.8 | |
| Shamsi et al. ( | DenseNet121 + SVM | 85.9 | 84.9 | 86.8 | ‐ | ‐ |
| Martinez ( | DenseNet169 | 87.7 | 85.6 | 90.2 | 87.8 | |
| Wang et al. ( | Contrastive Learning | 78.6 | 79.7 | ‐ | 78 | 78.8 |
| Proposed Model | VGGNet + CDBN + HRNet | 95 | 95 | 96 | 96 | 95 |
FIGURE 13The outcome of the proposed segmentation method for the difficult cases, a and c shows the orginal Ct images, b and d shows the segmented image
FIGURE 14The similarity between the positive and negative cases for the COVID‐19 CT image is shown. (a) Negative case and (b) positive case