| Literature DB >> 35941912 |
Samrat Kumar Dey1, Md Mahbubur Rahman2, Kabid Hassan Shibly3, Umme Raihan Siddiqi4, Arpita Howlader5.
Abstract
A novel coronavirus causing the severe and fatal respiratory syndrome was identified in China, is now producing outbreaks in more than 200 countries around the world, and became pandemic by the time. In this article, a modified version of the well-known mathematical epidemic model susceptible-infected-recovered (SIR) is used to analyze the epidemic's course of COVID-19 in eight different countries of the South Asian Association for Regional Cooperation (SAARC). To achieve this goal, the parameters of the SIR model are identified by using publicly available data for the corresponding countries: Afghanistan, Bangladesh, Bhutan, India, the Maldives, Nepal, Pakistan, and Sri Lanka. Based on the prediction model, we estimated the epidemic trend of COVID-19 outbreak in SAARC countries for 20, 90, and 180 days, respectively. A short-mid-long term prediction model has been designed to understand the early dynamics of the COVID-19 epidemic in the southeast Asian region. The maximum and minimum basic reproduction numbers (R 0 = 1.33 and 1.07) for SAARC countries are predicted to be in Pakistan and Bhutan. We equate simulation results with real data in the SAARC countries on the COVID-19 outbreak, and predicted different scenarios using the modified SIR prediction model. Our results should provide policymakers with a method for evaluating the impacts of possible interventions, including lockdown and social distancing, as well as testing and contact tracking.Entities:
Keywords: COVID‐19; SAARC; SARS‐CoV‐2; epidemics; modified susceptible‐infected‐recovered; prediction model
Year: 2022 PMID: 35941912 PMCID: PMC9349771 DOI: 10.1002/eng2.12550
Source DB: PubMed Journal: Eng Rep ISSN: 2577-8196
Tabular representation of different data sources of COVID‐19
| Dataset | Description | Columns |
|---|---|---|
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| COVID19_line_list_data.csv | This file is an aggregated version of the Novel Coronavirus dataset collected by Johns Hopkins University | Id, case_in_country, reporting date, summary, location, country, gender, age, symptom_onset, If_onset_approximate, hosp_visit_date, exposure_start, exposure_end, visiting Wuhan, from Wuhan, death, recovered, symptom, source |
| covid_19_data.csv | Daily level information on the number of COVID‐19 affected cases across the globe | Sno, observation date, province/state, country/region, last update, confirmed, deaths, recovered |
| time_series_covid_19_confirmed.csv | Time series data on the number of confirmed cases | Province/state, country/region, lat, long, 1/22/20…0.5/6/20 |
| time_series_covid_19_deaths.csv | Time series data on the number of death cases | Province/state, country/region, lat, long, 1/22/20…0.5/6/20 |
| time_series_covid_19_recovered.csv | Time series data on the number of recovered cases | Province/state, country/region, lat, long, 1/22/20…0.5/6/20 |
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| covid_19_clean_complete.csv | The file contains the cumulative count of confirmed, death and recovered cases of COVID‐19 from different countries from January 2020 | Province/state, country/region, lat, long, date, confirmed, deaths, recovered |
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| metadata.csv | This dataset contains metadata for 59k articles on COVID‐19 | Cord_uid, sha, source_x, title, doi, pmcid, license, abstract, publish_time, authors, journal |
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| population_by_country_2020.csv | This dataset contains the information from 235 countries along with their population till 2020 | Country (or dependency), population (2020), yearly change, net change, density (P/km2), land area (km2), migrants (net), fert. rate, med. age, urban pop %, world share |
Columns description of custom build COVID‐19 dataset
| Field name | Field data description |
|---|---|
| Sno. | Serial number |
| Province/state | Province or state of the observation |
| Country/region | Country of observation |
| Date | Date and time of the observation in MM/DD/YYYY HH:MM: SS |
| Confirmed | Number of confirmed cases |
| Deaths | Number of deaths |
| Recovered | Number of recovered cases |
| Active | Number of active cases |
| 1/22/20 | First reporting date |
| 5/18/2020 | Latest reporting date |
FIGURE 1Modified SIR (M‐SIR) model with the time‐varying transmission. It can dynamically adjust the crucial parameters while working on time‐varying data, which is also treated as an M‐SIR model.
Transmission rate, recovery rate, and reproduction number of SAARC countries
| Countries | Transmission rate ( | Recovery rate ( | Reproduction number ( |
|---|---|---|---|
| Afghanistan | 0.5997691 | 0.4889147 | 1.22673566575 |
| Bangladesh | 0.6286615 | 0.4932285 | 1.2745847006 |
| Bhutan | 0.5334682 | 0.4982385 | 1.07070850607 |
| India | 0.5060977 | 0.3955793 | 1.27938367857 |
| Maldives | 0.5774223 | 0.4920300 | 1.17355100299 |
| Nepal | 0.5406592 | 0.4954823 | 1.09117762632 |
| Pakistan | 0.5254487 | 0.3947732 | 1.33101411139 |
| Sri Lanka | 0.5595021 | 0.4933888 | 1.13399838018 |
FIGURE 2Graphical representation of countrywide COVID‐19 total confirmed and death cases along with the total number of confirmed and death cases per million till May 30, 2020. This graphical representation provides a comprehensive overview of the total number of confirmed and death cases in SAARC regions. Countrywise COVID‐19 confirmed and death cases along with the number of cases per million illustrated in (A–D) till May 30, 2020. Based on the illustration in (A) and (C), India has confirmed the highest number of infected cases (173,763) along with the most number of death cases (5164) in the region.
FIGURE 3Graphical representation of a short‐term prediction curve till June 19, 2020, for all the countries of SAARC regions. This short‐term prediction model for the next 20 days provides a depiction of all SAARC countries' evaluation of COVID‐19 till mid‐June. All the countries prediction curves are denoted from (A–H), respectively, where (A) Afghanistan, (B) Bangladesh, (C) Bhutan, (D) India, (E) Maldives, (F) Nepal, (G) Pakistan, (H) Sri Lanka predicted the epidemiological curve for next 20 days successfully.
Statistical summary of 180 days prediction model for the most affected countries in the SAARC region
| Countries | Model‐confirmed | Model‐deaths | Model‐recovered | Model‐active | |
|---|---|---|---|---|---|
| Mean | AFG | 190,412.40 | 4643.50 | 11,126.18 | 174,642.719 |
| BAN | 155,231.18 | 2218.13 | 23,731.48 | 129,281.56 | |
| IND | 211,200.72 | 3017.89 | 27,867.53 | 180,315.3 | |
| PAK | 528,468.79 | 11,653.97 | 68,238.28 | 448,576.53 | |
| Standard error | AFG | 11,206.57 | 273.28 | 509.94 | 10,430.84 |
| BAN | 4659.14 | 66.57 | 456.77 | 4168.88 | |
| IND | 47,359.55 | 1479.88 | 48,017.68 | 2700.96 | |
| PAK | 25,914.54 | 571.47 | 1998.50 | 23,473.099 | |
| Standard deviation | AFG | 150,351.97 | 3666.56 | 6841.61 | 139,944.42 |
| BAN | 62,509.03 | 893.20 | 6128.31 | 55,931.46 | |
| IND | 635,395.08 | 19,854.72 | 644,224.84 | 36,237.26 | |
| PAK | 347,680.15 | 7667.16 | 26,812.71 | 314,924.67 | |
| Range | AFG | 485,970.31 | 11,851.13 | 21,504.85 | 452,614.31 |
| BAN | 200,118.47 | 2859.53 | 22,442.97 | 174,815.96 | |
| IND | 2,004,354.33 | 62,631.73 | 2,004,242.36 | 94,846.56 | |
| PAK | 1,119,327.13 | 24,683.79 | 86,381.49 | 1,008,261.84 | |
| Minimum | AFG | 7898.49 | 192.61 | 924.35 | 6781.52 |
| BAN | 26,187.94 | 374.20 | 5558.10 | 20,255.63 | |
| IND | 110,541.12 | 3454.17 | 44,567.18 | 0 | |
| PAK | 46,959.35 | 1035.56 | 13,124.96 | 32,798.82 | |
| Maximum | AFG | 493,868.81 | 12,043.75 | 22,429.20 | 459,395.84 |
| BAN | 226,306.41 | 3233.74 | 28,001.08 | 195,071.59 | |
| IND | 2,114,895.46 | 66,085.91 | 2,048,809.55 | 94,846.56 | |
| PAK | 1,166,286.48 | 25,719.35 | 99,506.45 | 1,041,060.66 | |
| First quartile (25%) | AFG | 51,363.72 | 1232.90 | 4631.15 | 44,692.82 |
| BAN | 104,429.75 | 1492.22 | 21,777.67 | 81,159.87 | |
| IND | 494,619.83 | 15,455.8 | 427,771.65 | 0 | |
| PAK | 202,699.9 | 4470.01 | 46,338.15 | 151,891.8 | |
| Median (50%) | AFG | 156,590.5 | 3818.70 | 10,947.42 | 141,824.4 |
| BAN | 174,802.19 | 2497.78 | 26,986.22 | 145,318.2 | |
| IND | 1,095,738.02 | 34,239.44 | 1,061,498.57 | 0 | |
| PAK | 487,562.5 | 10,751.9 | 76,114.45 | 400,696.1 | |
| Third quartile (75%) | AFG | 314,807 | 7724.63 | 17,425.18 | 291,608.2 |
| BAN | 211,200.72 | 3017.89 | 27,867.53 | 180,315.3 | |
| IND | 1,679,552.22 | 52,482.38 | 1,621,471.80 | 59,168.73 | |
| PAK | 835,283.1 | 18,419.96 | 92,331.4 | 724,531.8 |
Note: Count: 180.
Population, total area, and density of SAARC countries with their individual world share
| Countries | Population | Land area (km2) | Density (P/km2) | World share % |
|---|---|---|---|---|
| Afghanistan | 38,742,911 | 652,860 | 60 | 0.50 |
| Bangladesh | 164,354,176 | 130,170 | 1265 | 2.11 |
| Bhutan | 769,867 | 38,117 | 20 | 0.01 |
| India | 1,377,233,523 | 2,973,190 | 464 | 17.70 |
| Maldives | 538,558 | 300 | 1802 | 0.01 |
| Nepal | 29,027,347 | 143,350 | 203 | 0.37 |
| Pakistan | 219,992,900 | 770,880 | 287 | 2.83 |
| Sri Lanka | 21,395,196 | 62,710 | 341 | 0.27 |
Predicted data based on M‐SIR model for the countries of SAARC region
| Countries | Short term prediction (20 days) | Mid‐term prediction (90 days) | Long term prediction (180 days) | Remarks | |
|---|---|---|---|---|---|
| Afghanistan | Confirmed | 35,286 | 297,264 | 1,092,714 |
Confirmed, recovery and active cases will increase at each predictive term In the long‐term forecast, the number of death cases will decrease comparing with the mid‐term forecast |
| Deaths | 652 | 5498 | 3521 | ||
| Recovered | 2555 | 8521 | 13,416 | ||
| Active | 32,078 | 283,245 | 1,075,775 | ||
| Bangladesh | Confirmed | 100,037 | 451,840 | 867,700 |
Significant rise will be observed in confirmed and active cases The number of recovered cases after mid‐term prediction will not increase much in the long‐term prediction |
| Deaths | 1346 | 6080 | 11,676 | ||
| Recovered | 17,724 | 29,418 | 30,476 | ||
| Active | 80,966 | 416,341 | 825,547 | ||
| Bhutan | Confirmed | 61 | 372 | 1683 |
Large number of confirmed cases but not enough recovery The number of deaths will remain zero |
| Deaths | 0 | 0 | 0 | ||
| Recovered | 11 | 32 | 79 | ||
| Active | 50 | 340 | 1603 | ||
| India | Confirmed | 378,657 | 1,717,831 | 3,709,965 |
The highest number of confirmed, deaths, recovered and active cases will be observed in the region It will show significant improvement in recovery cases |
| Deaths | 10,648 | 48,307 | 104,329 | ||
| Recovered | 217,681 | 1,269,646 | 2,609,589 | ||
| Active | 150,327 | 399,877 | 996,047 | ||
| Maldives | Confirmed | 2873 | 5970 | 7081 |
Both the confirmed and recovered cases will increase with a similar trend Death cases will also fall to zero as active cases |
| Deaths | 14 | 0 | 0 | ||
| Recovered | 1139 | 5970 | 7081 | ||
| Active | 1719 | 0 | 0 | ||
| Nepal | Confirmed | 6295 | 185,528 | 1,089,821 |
Confirmed cases will notably increase. However, the death cases will jump to 2955 from zero in the long‐term prediction. |
| Deaths | 0 | 0 | 2955 | ||
| Recovered | 1783 | 99,292 | 658,568 | ||
| Active | 4512 | 86,236 | 428,297 | ||
| Pakistan | Confirmed | 118,775 | 332,528 | 497,800 |
Confirmed, deaths, recovered and active cases will increase gradually Recovered cases will show almost double in the long‐term prediction |
| Deaths | 2534 | 7096 | 10,623 | ||
| Recovered | 49,434 | 254,510 | 487,176 | ||
| Active | 66,806 | 70,921 | 588,234 | ||
| Sri Lanka | Confirmed | 2496 | 8832 | 23,151 |
In the mid‐term and long‐term forecast, active cases will become zero |
| Deaths | 0 | 40 | 106 | ||
| Recovered | 1840 | 8791 | 23,045 | ||
| Active | 655 | 0 | 0 | ||
FIGURE 4Visualization of a mid‐term prediction curve till August 31, 2020, for all the countries of SAARC regions. Based on the M‐SIR prediction model, prediction statistics for the upcoming 90 days for all the countries in the SAARC regions has depicted here. Different predicted case scenarios (confirmed, death, recovered, and active) till August 31, 2020, help to understand the epidemiological nature of COVID‐19 in the south Asian region. The predicted model indicates that in the next 90 days prediction curve will increase sharply for India (in terms of confirmed and death cases). Moreover, India will also show a substantial increase in its recovery rate. However, the number of active cases will increase in Pakistan till August 31, 2020.
FIGURE 5Graphical representation of a long‐term prediction curve till November 30, 2020, for all the countries of SAARC regions. This long‐term prediction model for the next 180 days provides a depiction of all SAARC countries' evaluation of COVID‐19 till mid‐November. All the countries prediction curves are denoted here from (A–H), respectively, where (A) Afghanistan, (B) Bangladesh, (C) Bhutan, (D) India, (E) Maldives, (F) Nepal, (G) Pakistan, (H) Sri Lanka predicted the epidemiological curve for next 180 days successfully.