Literature DB >> 35939282

Active Cortex Tractography.

Ye Wu1, Yoonmi Hong1, Sahar Ahmad1, Pew-Thian Yap1.   

Abstract

Most existing diffusion tractography algorithms are affected by gyral bias, causing the termination of streamlines at gyral crowns instead of sulcal banks. In this paper, we propose a tractography technique, called active cortex tractography (ACT), to overcome gyral bias by enabling fiber streamlines to curve naturally into the cortex. We show that the cortex can play an active role in cortical tractography by providing anatomical information to overcome orientation ambiguities as the streamlines enter the superficial white matter in gyral blades and approach the cortex. This is achieved by devising a direction scouting mechanism that takes into account the white matter surface normal vectors. The scouting mechanism allows probing of directions further in space to prepare the streamlines to turn at appropriate angles. The surface normal vectors guide the streamlines to turn into the cortex, perpendicular to the white-gray matter interface. Evaluation using synthetic, macaque and human data with different streamline seeding schemes demonstrates that ACT improves cortical tractography.

Entities:  

Keywords:  Diffusion MRI; Gyral bias; Structural connectivity; Tractography

Year:  2021        PMID: 35939282      PMCID: PMC9355463          DOI: 10.1007/978-3-030-87234-2_44

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  19 in total

1.  Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography.

Authors:  Colin Reveley; Anil K Seth; Carlo Pierpaoli; Afonso C Silva; David Yu; Richard C Saunders; David A Leopold; Frank Q Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

2.  Towards quantitative connectivity analysis: reducing tractography biases.

Authors:  Gabriel Girard; Kevin Whittingstall; Rachid Deriche; Maxime Descoteaux
Journal:  Neuroimage       Date:  2014-05-09       Impact factor: 6.556

3.  Penalized Geodesic Tractography for Mitigating Gyral Bias.

Authors:  Ye Wu; Yuanjing Feng; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-13

4.  A Multi-Tissue Global Estimation Framework for Asymmetric Fiber Orientation Distributions.

Authors:  Ye Wu; Yuanjing Feng; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-13

Review 5.  Diffusion MRI fiber tractography of the brain.

Authors:  Ben Jeurissen; Maxime Descoteaux; Susumu Mori; Alexander Leemans
Journal:  NMR Biomed       Date:  2017-09-25       Impact factor: 4.044

6.  JEDI: Joint Estimation Diffusion Imaging of macroscopic and microscopic tissue properties.

Authors:  Lawrence R Frank; Benjamin Zahneisen; Vitaly L Galinsky
Journal:  Magn Reson Med       Date:  2020-01-09       Impact factor: 4.668

Review 7.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

8.  Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey.

Authors:  Chad J Donahue; Stamatios N Sotiropoulos; Saad Jbabdi; Moises Hernandez-Fernandez; Timothy E Behrens; Tim B Dyrby; Timothy Coalson; Henry Kennedy; Kenneth Knoblauch; David C Van Essen; Matthew F Glasser
Journal:  J Neurosci       Date:  2016-06-22       Impact factor: 6.167

9.  Improved tractography using asymmetric fibre orientation distributions.

Authors:  Matteo Bastiani; Michiel Cottaar; Krikor Dikranian; Aurobrata Ghosh; Hui Zhang; Daniel C Alexander; Timothy E Behrens; Saad Jbabdi; Stamatios N Sotiropoulos
Journal:  Neuroimage       Date:  2017-06-29       Impact factor: 6.556

10.  The challenge of mapping the human connectome based on diffusion tractography.

Authors:  Klaus H Maier-Hein; Peter F Neher; Jean-Christophe Houde; Marc-Alexandre Côté; Eleftherios Garyfallidis; Jidan Zhong; Maxime Chamberland; Fang-Cheng Yeh; Ying-Chia Lin; Qing Ji; Wilburn E Reddick; John O Glass; David Qixiang Chen; Yuanjing Feng; Chengfeng Gao; Ye Wu; Jieyan Ma; Renjie He; Qiang Li; Carl-Fredrik Westin; Samuel Deslauriers-Gauthier; J Omar Ocegueda González; Michael Paquette; Samuel St-Jean; Gabriel Girard; François Rheault; Jasmeen Sidhu; Chantal M W Tax; Fenghua Guo; Hamed Y Mesri; Szabolcs Dávid; Martijn Froeling; Anneriet M Heemskerk; Alexander Leemans; Arnaud Boré; Basile Pinsard; Christophe Bedetti; Matthieu Desrosiers; Simona Brambati; Julien Doyon; Alessia Sarica; Roberta Vasta; Antonio Cerasa; Aldo Quattrone; Jason Yeatman; Ali R Khan; Wes Hodges; Simon Alexander; David Romascano; Muhamed Barakovic; Anna Auría; Oscar Esteban; Alia Lemkaddem; Jean-Philippe Thiran; H Ertan Cetingul; Benjamin L Odry; Boris Mailhe; Mariappan S Nadar; Fabrizio Pizzagalli; Gautam Prasad; Julio E Villalon-Reina; Justin Galvis; Paul M Thompson; Francisco De Santiago Requejo; Pedro Luque Laguna; Luis Miguel Lacerda; Rachel Barrett; Flavio Dell'Acqua; Marco Catani; Laurent Petit; Emmanuel Caruyer; Alessandro Daducci; Tim B Dyrby; Tim Holland-Letz; Claus C Hilgetag; Bram Stieltjes; Maxime Descoteaux
Journal:  Nat Commun       Date:  2017-11-07       Impact factor: 14.919

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