Literature DB >> 35931785

Colorimetric detection of norovirus by helicase-dependent amplification method based on specific primers integrated with HRPzyme.

Jeong-Eun Lee1, Sol-A Kim2, Hyun-Jin Park2, Hyoyoung Mun3, Kwang-Soo Ha4, Won-Bo Shim5,6,7.   

Abstract

Noroviruses (NoVs) are the most common causes of epidemic gastroenteritis, responsible for at least 50% of all gastroenteritis outbreaks worldwide and significant causes of foodborne illness. In the USA, approximately 21 million illnesses attributable to NoVs have annually occurred. Therefore, there is a great demand to develop a rapid, low-cost, and accurate detection method for NoVs. This study first reported colorimetric helicase-dependent amplification (HDA) methods based on specific primers integrated with HRPzyme for the rapid and sensitive detection of NoV GI and GII. The colorimetric HDA methods exhibited a detection limit of 10 copies mL-1 of each NoV GI and GII and were confirmed to be specific to each NoV GI and GII. The period required to complete the HDA method was 2 h, including a step of RNA extraction and cDNA synthesis without expensive instruments such as a thermal cycler and detector. The cutoff value of the method for the oyster artificially inoculated with a known amount of NoV was all 102 copies g-1 for NoV GI and GII. Therefore, the HDA method developed in this study can be useful tool for the on-site detection of NoVs in food samples.
© 2022. Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Colorimetric detection; HRPzyme; Helicase-dependent amplification; Norovirus (NoV)

Mesh:

Substances:

Year:  2022        PMID: 35931785     DOI: 10.1007/s00216-022-04247-5

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.478


  18 in total

1.  Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection.

Authors:  Masaki Imai; Ai Ninomiya; Harumi Minekawa; Tsugunori Notomi; Toru Ishizaki; Masato Tashiro; Takato Odagiri
Journal:  Vaccine       Date:  2006-06-08       Impact factor: 3.641

Review 2.  Advances in laboratory methods for detection and typing of norovirus.

Authors:  Jan Vinjé
Journal:  J Clin Microbiol       Date:  2014-07-02       Impact factor: 5.948

Review 3.  Norovirus assembly and stability.

Authors:  Ronja Pogan; Jasmin Dülfer; Charlotte Uetrecht
Journal:  Curr Opin Virol       Date:  2018-05-30       Impact factor: 7.090

4.  Updated classification of norovirus genogroups and genotypes.

Authors:  Preeti Chhabra; Miranda de Graaf; Gabriel I Parra; Martin Chi-Wai Chan; Kim Green; Vito Martella; Qiuhong Wang; Peter A White; Kazuhiko Katayama; Harry Vennema; Marion P G Koopmans; Jan Vinjé
Journal:  J Gen Virol       Date:  2019-10       Impact factor: 3.891

Review 5.  Norovirus diagnostics: options, applications and interpretations.

Authors:  Andrew Kirby; Miren Iturriza-Gómara
Journal:  Expert Rev Anti Infect Ther       Date:  2012-04       Impact factor: 5.091

6.  Helicase-dependent isothermal DNA amplification.

Authors:  Myriam Vincent; Yan Xu; Huimin Kong
Journal:  EMBO Rep       Date:  2004-07-09       Impact factor: 8.807

Review 7.  Noroviruses: agents in outbreaks of acute gastroenteritis.

Authors:  Alice C Thornton; Karen S Jennings-Conklin; Malkanthie I McCormick
Journal:  Disaster Manag Response       Date:  2004 Jan-Mar

Review 8.  Outbreaks where food workers have been implicated in the spread of foodborne disease. Part 6. Transmission and survival of pathogens in the food processing and preparation environment.

Authors:  Ewen C D Todd; Judy D Greig; Charles A Bartleson; Barry S Michaels
Journal:  J Food Prot       Date:  2009-01       Impact factor: 2.077

9.  Detection of murine norovirus by reverse transcription loop-mediated isothermal amplification.

Authors:  Ken-Ichi Hanaki; Fumio Ike; Ayako Kajita; Wataru Yasuno; Misato Yanagiba; Motoki Goto; Kouji Sakai; Yasushi Ami; Shigeru Kyuwa
Journal:  J Virol Methods       Date:  2014-04-06       Impact factor: 2.014

10.  Microfluidic devices harboring unsealed reactors for real-time isothermal helicase-dependent amplification.

Authors:  Naveen Ramalingam; Tong Chee San; Teo Jin Kai; Matthew Yew Mun Mak; Hai-Qing Gong
Journal:  Microfluid Nanofluidics       Date:  2009-01-09       Impact factor: 2.529

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