| Literature DB >> 35928446 |
Miriam Nurm1,2, Anu Reigo1, Margit Nõukas1,3, Liis Leitsalu1, Tiit Nikopensius1, Marili Palover1,3, Tarmo Annilo1, Maris Alver1,4, Aet Saar5,6, Toomas Marandi5,6, Tiia Ainla5,6, Andres Metspalu1,3, Tõnu Esko1, Neeme Tõnisson1,7.
Abstract
Recall-by-genotype (RbG) studies conducted with population-based biobank data remain urgently needed, and follow-up RbG studies, which add substance to this research approach, remain solitary. In such studies, potentially disease-related genotypes are identified and individuals with those genotypes are recalled for consultation to gather more detailed clinical phenotypic information and explain to them the meaning of their genetic findings. Familial hypercholesterolemia (FH) is among the most common autosomal-dominant single-gene disorders, with a global prevalence of 1 in 500 (Nordestgaard et al., Eur. Heart J., 2013, 34 (45), 3478-3490). Untreated FH leads to lifelong elevated LDL cholesterol levels, which can cause ischemic heart disease, with potentially fatal consequences at a relatively early age. In most cases, the pathogenesis of FH is based on a defect in one of three LDL receptor-related genes-APOB, LDLR, and PCSK9. We present our first long-term follow-up RbG study of FH, conducted within the Estonian Biobank (34 recalled participants from a pilot RbG study and 291 controls harboring the same APOB, LDLR, and PCSK9 variants that were included in the pilot study). The participants' electronic health record data (FH-related diagnoses, lipid-lowering treatment prescriptions) and pharmacogenomic risk of developing statin-induced myopathy were assessed. A survey was administered to recalled participants to discern the impact of the knowledge of their genetic findings on their lives 4-6 years later. Significant differences in FH diagnoses and lipid-lowering treatment prescriptions were found between the recalled participants and controls (34 and 291 participants respectively). Our study highlights the need for more consistent lipid-lowering treatment adherence checkups and encourage more follow-up RbG studies to be performed.Entities:
Keywords: biobank to practice; familial hypercholesterolemia (FH); lipid lowering treatment; long-term survey; participant survey; pharmacogenomic risk assessment; recall-by-genotype
Year: 2022 PMID: 35928446 PMCID: PMC9343846 DOI: 10.3389/fgene.2022.936131
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
FIGURE 1The workflow of the study. The initial cohort of recalled participants originated from the FH RbG pilot study conducted by Alver et al. in 2016–2018. Recalled participants who had also signed up as biobank participants by Fall 2021 were eligible to participate in the follow-up.
FH-associated genetic variants detected in the follow-up cohort. Participants with LDLR p.Val436Ala (rs779732323) and PCSK9 p.Ala103Ser (novel) were assigned to the control group because they declined visitation offered by Alver et al. (2018) in 2016–2018. *One individual had both APOB p.Arg3527Gln (rs5742904) and LDLR p.His250Arg (rs1256668310) variants. SNV, single nucleotide variant; rs, dbSNP reference number; RbG, recall by genotype; GS, genome sequencing; ES, exome sequencing.
| Gene RefSeq Protein ID | SNP | RbG participants | Controls | Sum |
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| p.Arg3527Gln (rs5742904) | 20 | 176 | 196 | 11 | |
| p.Gly861Glu (rs1663664782) | 1 | 0 | 1 | ||
| p.Cys4217Alafs3* (novel) | 1 | 0 | 1 | ||
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| p.His250Arg (rs1256668310) | 1 | 22 | 23 | 2 | |
| p.Leu401His (rs121908038) | 1 | 2 | 3 | 2 | |
| p.Ala431Ser (rs28942079) | 1 | 13 | 14 | 1 | |
| p.Arg633His (rs754536745) | 1 | 0 | 1 | 1 | |
| p.Cys329Tyr (rs761954844) | 3 | 72 | 75 | 5 | |
| p.Arg215Cys (rs764042910) | 2 | 1 | 3 | 1 | |
| p.Gly396Ala (rs766474188) | 1 | 0 | 1 | 1 | |
| p.Arg115Cys (rs774723292) | 1 | 0 | 1 | 1 | |
| p.Val436Ala (rs779732323) | 0 | 2 | 2 | 1 | |
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| p.Arg357Cys (rs148562777) | 1 | 3 | 4 | 1 | |
| p.Ala103Ser (novel) | 0 | 1 | 1 | ||
Cohort characteristics. RbG, recall-by-genotype; BMI, body mass index.
| RbG participants ( | Controls ( | |
|---|---|---|
| Gender–female (%) | 18 (52.9%) | 186 (63.9%) |
| Age (range) | Median 49.5 (29–84) | Median 49 (21–100) |
| BMI (range) | Mean 25.5 (18.2–44.3) | Mean 26.3 (17.2–50.8) |
| Smoking (%) | ||
| Never | 19 (55.9%) | 138 (47.4%) |
| Former | 7 (20.6%) | 70 (24.1%) |
| Current | 8 (23.5%) | 67 (23.0%) |
| Unknown | 0 | 16 (5.5%) |
Principal FH-related findings. The statin risk warning is applicable only for simvastatin, atorvastatin, and rosuvastatin. *ICD-10 codes were reduced to three characters, with each code counted only once for each individual.
| RbG participants | Controls |
| |
|---|---|---|---|
| All diagnoses* (excluding Z codes) | 34 people with 1,413 diagnosis codes–on average 41.6 per person | 291 people with 11,857 diagnosis codes–on average 40.7 per person | |
| Participants with E78 diagnosis code (including all subsets) | 32 (94.1%) | 195 (67.0%) | <0.001 |
| Participants with E78.0 Pure hypercholesterolemia diagnosis code | 28 (82.4%) | 134 (46.0%) | <0.001 |
| Users of any lipid lowering medication | 27 (79.4%) | 155 (53.3%) | <0.005 |
| Statin side effect (myopathy) risk assessment according to genotype | |||
| Normal risk | 23 (67.6%) | 201 (69.1%) | |
| Higher risk | 10 (29.4%) | 83 (28.5%) | |
| Much higher risk | 1 (2.9%) | 7 (2.4%) | |
FIGURE 2Gantt chart depicting lipid lowering treatment for recalled participants from 2004 until 2022 (n = 27). The time period between the two solid black lines signifies the period of RbG visits (2016–2018) in the Alver et al. study. The dashed line signifies the end of the drug prescription registry follow-up. The lines crossing the end of follow-up indicate purchase of a significant stock of medication in advance. Drug name here indicates the active substance of the prescribed LLT, not the brand name. Participant #7450004 passed away in 2018 (denoted by *).
FIGURE 3Mean values for answers given to the first portion of the RbG feedback survey where the participants were asked to rate their agreement with the following statements (n = 24). The answers were converted to numeric values according to the scale: “agree”-5, “slightly agree”-4, “unsure”-3, “slightly disagree”-2. “disagree”-1. Mean values above three signify agreement with the specific statement.
FIGURE 4Overview of the assessment of the current state of the healthcare system by recalled participants (n = 24). The answers are presented as mean values of provided answers converted to numeric values: “very good”-5, “good”-4, “unsure”-3, “satisfactory”-2, “unsatisfactory”-1. Mean values above three signify satisfaction with the specific healthcare aspect.
FIGURE 5Feedback on health issues potentially related to hypercholesterolemia as reported by recalled participants (n = 24).
FIGURE 6Recalled participants’ self-reported assessment of their adherence to the treatment plan proposed by their doctor (n = 24).
FIGURE 7Overview of the feedback to question “How have you changed your habits after receiving information on the genetic variant you carry?” in regard to changes in diet.