| Literature DB >> 35924169 |
Linzhi Jin1,2, Qi Chen3, Aiwei Shi3, Xiaomin Wang2, Runchuan Ren2, Anping Zheng2, Ping Song2, Yaowen Zhang2, Nan Wang1, Chenyu Wang2, Nengchao Wang2, Xinyu Cheng2, Shaobin Wang3, Hong Ge1.
Abstract
Purpose: The aim of this study was to propose and evaluate a novel three-dimensional (3D) V-Net and two-dimensional (2D) U-Net mixed (VUMix-Net) architecture for a fully automatic and accurate gross tumor volume (GTV) in esophageal cancer (EC)-delineated contours.Entities:
Keywords: automated contouring; deep learning; esophageal cancer; gross tumor volumes; radiotherapy
Year: 2022 PMID: 35924169 PMCID: PMC9339638 DOI: 10.3389/fonc.2022.892171
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Architecture of VUMix-Net. The input CT slices are first cropped to better localize the body region. Slices are classified into positive or negative samples by the 3D V-Net-based CNN. Precise segmentation is further applied to the positive slices through the 2D U-Net-based CNN.
Figure 2Architecture of the 2D U-Net-based CNN.
Figure 3The training DSC and loss of function.
Patient characteristics.
| Characteristic | Entire Cohort (n = 215) | Training–ValidationCohort (n = 185) | Test Cohort (n = 30) | P-Value |
|---|---|---|---|---|
| Sex | Male | 111 | 20 | 0.488 |
| Female | 74 | 10 | ||
| Age | <60 | 89 | 14 | 0.833 |
| >60 | 96 | 16 | ||
| T category | T1-2 | 59 | 7 | 0.346 |
| T3-4 | 126 | 23 |
Two-dimensional Dice similarity coefficient (2D-DSC), three-dimensional Dice similarity coefficient (3D-DSC), and 95th-percentile Hausdorff distance (95HD) values of the gross tumor volume (GTV) contours in different from network architectures and esophageal locations.
| 2D-DSC | 3D-DSC | 95HD | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2D-DSC ± STD | P | Variance | 3D-DSC ± STD | P | Variance | 95HD ± STD | P | Variance | ||||
| U-Net | 0.45 ± 0.31 | 0.01 | U-V | 0.07 | 0.84 ± 0.12 | 0.70 | U-V | 0.87 | 19.08 ± 21.15 | 0.49 | U-V | 0.46 |
| V-Net | 0.60 ± 0.29 | V-VU | 0.73 | 0.84 ± 0.13 | V-VU | 0.44 | 15.24 ± 18.78 | V-VU | 0.68 | |||
| VUMiX-Net | 0.68 ± 0.27 | U-VU | 0.00 | 0.86 ± 0.12 | U-VU | 0.52 | 13.38 ± 16.29 | U-VU | 0.25 | |||
| Upper | 0.72 ± 0.16 | <0.001 | 0.90 ± 0.04 | <0.001 | 7.95 ± 5.69 | <0.001 | ||||||
| Middle | 0.70 ± 0.20 | 0.92 ± 0.05 | 6.96 ± 4.61 | |||||||||
| Lower | 0.31 ± 0.32 | 0.73 ± 0.14 | 32.78 ± 24.23 | |||||||||
Figure 4GTV delineations for a patient predicted from U-Net, V-Net, and VUMix-Net. (A) GTV on six transversal planes, (B) GTV on a coronal plane, (C) GTV on a sagittal plane. The CT slices were scanned from an upper esophageal cancer patient.
Figure 5Boxplots. (A) 2D-DSC from U-Net, V-Net, and VUMix-Net in all patients; (B) 3D-DSC from U-Net, VNet, and VUMix-Net in all patients; (C) HD95 from U-Net, V-Net, and VUMIx-Net in all patients.
2D-DSC, 3D-DSC, and 95HD values of the GTV contours in upper and middle esophageal cancer (EC) patients predicted from U-Net, V-Net, and VUMix-Net.
| 2D-DSC | 3D-DSC | 95HD | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2D-DSC ± STD | P | Variance | 3D-DSC ± STD | P | Variance | 95HD ± STD | P | Variance | ||||
| U-Net | 0.58 ± 0.23 | <0.001 | U-V | 0.01 | 0.90 ± 0.06 | 0.11 | U-V | 0.61 | 10.06 ± 6.96 | 0.02 | U-V | 0.04 |
| V-Net | 0.74 ± 0.12 | V-VU | <0.001 | 0.91 ± 0.04 | V-VU | 0.06 | 6.37 ± 3.05 | V-VU | 0.03 | |||
| VUMiX-Net | 0.81 ± 0.06 | U-VU | 0.03 | 0.93 ± 0.03 | U-VU | 0.07 | 5.95 ± 5.75 | U-VU | 0.70 | |||
2D-DSC, 3D-DSC, and 95HD values of the GTV contours in upper EC, middle EC, and lower EC patients predicted from U-Net, V-Net, and VUMix-Net.
| 2D-DSC | 3D-DSC | 95HD | |||||
|---|---|---|---|---|---|---|---|
| 2D-DSC ± STD | P | 3D-DSC ± STD | P | 95HD ± STD | P | ||
| Upper | U-Net | 0.64 ± 0.21 | 0.09 | 0.91 ± 0.5 | 0.34 | 10.29 ± 8.33 | 0.29 |
| V-Net | 0.73 ± 0.15 | 0.89 ± 0.03 | 6.73 ± 3.46 | ||||
| VUMiX-Net | 0.80 ± 0.05 | 0.91 ± 0.03 | 6.84 ± 3.27 | ||||
| Middle | U-Net | 0.53 ± 0.25 | <0.001 | 0.89 ± 0.07 | 0.06 | 9.82 ± 5.73 | 0.04 |
| V-Net | 0.75 ± 0.09 | 0.92 ± 0.04 | 6.00 ± 2.73 | ||||
| VUMiX-Net | 0.83 ± 0.06 | 0.94 ± 0.03 | 5.07 ± 3.75 | ||||
| Lower | U-Net | 0.19 ± 0.28 | 0.25 | 0.74 ± 0.14 | 0.84 | 37.11 ± 28.33 | 0.73 |
| V-Net | 0.31 ± 0.33 | 0.71 ± 0.15 | 33.00 ± 24.33 | ||||
| VUMiX-Net | 0.43 ± 0.35 | 0.74 ± 0.14 | 28.22 ± 21.47 | ||||
The oncologists’ evaluation results.
| Score | A | B | ||
|---|---|---|---|---|
| AI | GT | AI | GT | |
| 0 | 0 (0.00%) | 0 (0.00%) | 0 (0%) | 0 (0.00%) |
| 1 | 1 (0.23%) | 0 (0.00%) | 2 (0.45%) | 0 (0.00%) |
| 2 | 73 (16.59%) | 85 (19.32%) | 93 (21.14%) | 90 (20.45%) |
| 3 | 366 (83.18%) | 355 (80.68%) | 345 (78.41%) | 350 (79.55%) |
| P-value | 0.34 | 0.65 | ||
Mean clinical score of GTV by two oncologists.
| Score | AI | GT | ||
|---|---|---|---|---|
| A | B | A | B | |
| 0 | 0 (0.00%) | 0 (0%) | 0 (0.00%) | 0 (0.00%) |
| 1 (0.23%) | 2 (0.45%) | 0 (0.00%) | 0 (0.00%) | |
| 73 (16.59%) | 93 (21.14%) | 85 (19.32%) | 90 (20.45%) | |
| 366 (83.18%) | 345 (78.41%) | 355 (80.68%) | 350 (79.55%) | |
| 0.07 | 0.67 | |||
Figure 6Distribution of GTV scores by (A) and (B) oncologist.
Comparison of computational complexity.
| Model name | Number of parameters | Size on Disk | Inference time |
|---|---|---|---|
| U-Net | 7.8 M | 89 MB | 5 s |
| V-Net | 67.1 M | 542 MB | 14 s |
| VUMiX-Net | 13.1 M | 102 MB | 11 s |