| Literature DB >> 35924158 |
Chunxiao Li1, Haibo Huang2, Ying Chen2, Sihui Shao1, Jing Chen1, Rong Wu1, Qi Zhang2.
Abstract
Purpose: This study aimed to develop a deep convolutional neural network (DCNN) model to classify molecular subtypes of breast cancer from ultrasound (US) images together with clinical information.Entities:
Keywords: breast cancer; deep convolutional neural network; luminal A; molecular subtype; triple-negative breast cancer; ultrasound
Year: 2022 PMID: 35924158 PMCID: PMC9339685 DOI: 10.3389/fonc.2022.848790
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Examples of our ultrasound image dataset. (A) A 72-year-old woman with intraductal papillary breast carcinoma (1.6 cm) of luminal A subtype. (B) A 56-year-old woman with invasive ductal breast carcinoma (1.7 cm) of luminal B subtype. (C) A 40-year-old woman with invasive micropapillary breast carcinoma (1.5 cm) of HER2+ subtype. (D) A 39-year-old woman with invasive ductal breast carcinoma (1.9 cm) of triple-negative subtype.
The main cohort dataset with different groups of tumor sizes and patient ages.
| Tumor size groups (mm) | Images (cases) | Total | |
|---|---|---|---|
| ≤20 | >20 | ||
| Luminal A | 401 (189) | 147 (59) | 548 (248) |
| Luminal B | 542 (246) | 535 (211) | 1,077 (457) |
| HER2+ | 112 (51) | 110 (54) | 222 (105) |
| Triple-negative | 197 (94) | 240 (108) | 437 (202) |
| Age groups (years) | ≤50 | >50 | |
| Luminal A | 148 (60) | 300 (188) | 548 (248) |
| Luminal B | 485 (182) | 592 (275) | 1,077 (457) |
| HER2+ | 75 (34) | 147 (71) | 222 (105) |
| Triple-negative | 114 (53) | 323 (149) | 437 (202) |
| Total | 2,284 (1,012) | ||
Figure 2The processing flow of our deep convolutional neural network architecture.
Diagnostic performance of deep convolutional neural network model for differentiating breast cancer subtypes in the main cohort.
| Experiment | Model | AUC | ACC (%) | SEN (%) | SPC (%) | YI (%) |
|---|---|---|---|---|---|---|
| Luminal A vs. non-luminal A | EfficientNet-B0 | 0.686 | 78.1 | 86.5 | 48.9 | 35.4 |
| DenseNet-121 | 0.717 | 80.1 | 87.8 | 53.3 | 41.1 | |
| VGGNet-19 | 0.664 | 74.6 | 82.1 | 48.9 | 31.0 | |
| Luminal vs. non-luminal | EfficientNet-B2 | 0.601 | 64.2 | 53.7 | 68.4 | 22.1 |
| DenseNet-121 | 0.587 | 61.1 | 64.8 | 59.6 | 24.4 | |
| VGGNet-19 | 0.561 | 64.2 | 48.1 | 70.6 | 18.7 | |
| Triple-negative vs. non-triple-negative | EfficientNet-B2 | 0.577 | 76.9 | 33.3 | 86.3 | 19.6 |
| DenseNet-121 | 0.565 | 58.1 | 60.6 | 57.5 | 18.1 | |
| VGGNet-19 | 0.572 | 50.5 | 69.7 | 46.4 | 16.1 |
AUC, area under the curve; ACC, accuracy; SEN, sensitivity; SPC, specificity; YI, Youden’s index.
Diagnostic performance of BI-RADS lexicon model for differentiating breast cancer subtypes in the main cohort.
| Experiment | AUC | ACC (%) | SEN (%) | SPC (%) | YI (%) |
|---|---|---|---|---|---|
| Luminal A vs. non-luminal A | 0.628 | 0.522 | 0.436 | 0.822 | 0.258 |
| Luminal vs. non-luminal | 0.494 | 0.668 | 0.222 | 0.846 | 0.068 |
| Triple-negative vs. non-triple-negative | 0.553 | 0.575 | 0.576 | 0.575 | 0.151 |
BI-RADS, Breast Imaging-Reporting and Data System; AUC, area under the curve; ACC, accuracy; SEN, sensitivity; SPC, specificity; YI, Youden’s index.
Diagnostic performance of deep convolutional neural network model for differentiating luminal A and non-luminal A subtypes based on patient age in the main cohort.
| Experiment | Model | AUC (%) | ACC (%) | SEN (%) | SPC (%) | YI (%) |
|---|---|---|---|---|---|---|
| Age ≤ 50 | EfficientNet-B0 | 58.1 | 46.4 | 35.7 | 92.3 | 28.0 |
| DenseNet-121 | 59.6 | 53.6 | 48.2 | 76.9 | 25.1 | |
| VGGNet-19 | 57.4 | 53.6 | 48.2 | 76.9 | 25.1 | |
| Age > 50 | EfficientNet-B0 | 75.2 | 83.3 | 90.0 | 62.5 | 54.6 |
| DenseNet-121 | 77.6 | 83.3 | 89.0 | 65.6 | 54.6 | |
| VGGNet-19 | 72.7 | 81.8 | 88.0 | 62.5 | 50.5 |
AUC, area under the curve; ACC, accuracy; SEN, sensitivity; SPC, specificity; YI, Youden’s index.
Figure 3The ROC curves of our DCNN model in identifying different breast cancer molecular subtypes on the test set. (A) Classifying luminal A from non-luminal A subtypes among patients older than 50 years. (B) Classifying luminal A from non-luminal A subtypes for tumor sizes ≤20 mm. (C) Classifying triple-negative from non-triple-negative subtypes for patients younger than 50 years. ROC, receiver operating characteristic; AUC, area under the ROC curve; DCNN, deep convolutional neural network.
Diagnostic performance of deep convolutional neural network model for differentiating triple-negative and non-triple-negative subtypes based on patient age in the main cohort.
| Experiment | Model | AUC (%) | ACC (%) | SEN (%) | SPC (%) | YI (%) |
|---|---|---|---|---|---|---|
| Age ≤ 50 | EfficientNet-B2 | 71.2 | 58.5 | 81.8 | 53.7 | 35.5 |
| DenseNet-121 | 68.5 | 63.1 | 81.8 | 59.3 | 41.1 | |
| VGGNet-19 | 63.5 | 63.1 | 72.7 | 61.1 | 33.8 | |
| Age > 50 | EfficientNet-B2 | 50.4 | 71.9 | 36.4 | 79.8 | 16.2 |
| DenseNet-121 | 51.2 | 33.1 | 95.5 | 19.2 | 14.6 | |
| VGGNet-19 | 55.1 | 68.6 | 40.9 | 74.7 | 15.7 |
AUC, area under the curve; ACC, accuracy; SEN, sensitivity; SPC, specificity; YI, Youden’s index.
Diagnostic performance of deep convolutional neural network model for differentiating luminal A and non-luminal A subtypes based on tumor sizes in the main cohort.
| Experiment | Model | AUC (%) | ACC (%) | SEN (%) | SPC (%) | YI (%) |
|---|---|---|---|---|---|---|
| Long diameter ≤ 20 mm | EfficientNet-B0 | 80.8 | 75.9 | 78.8 | 68.8 | 47.5 |
| DenseNet-121 | 81.8 | 80.4 | 82.5 | 75.0 | 57.5 | |
| VGGNet-19 | 77.3 | 74.1 | 76.2 | 68.8 | 45.0 | |
| Long diameter > 20 mm | EfficientNet-B0 | 32.6 | 85.4 | 100 | 0 | 0 |
| DenseNet-121 | 43.4 | 21.3 | 7.9 | 100 | 7.9 | |
| VGGNet-19 | 34.1 | 25.8 | 15.8 | 84.6 | 0.4 |
AUC, area under the curve; ACC, accuracy; SEN, sensitivity; SPC, specificity; YI, Youden’s index.