| Literature DB >> 35903067 |
Tyler C Hillman1, Ryan Idnani2, Christopher G Wilson1,3.
Abstract
Understanding hypoxia/hyperoxia exposure requires either a high-altitude research facility or a chamber in which gas concentrations are precisely and reproducibly controlled. Hypoxia-induced conditions such as hypoxic-ischemic encephalopathy (HIE), obstructive or central apneas, and ischemic stroke present unique challenges for the development of models with acute or chronic hypoxia exposure. Many murine models exist to study these conditions; however, there are a variety of different hypoxia exposure protocols used across laboratories. Experimental equipment for hypoxia exposure typically includes flow regulators, nitrogen concentrators, and premix oxygen/nitrogen tanks. Commercial hypoxia/hyperoxia chambers with environmental monitoring are incredibly expensive and require proprietary software with subscription fees or highly expensive software licenses. Limitations exist in these systems as most are single animal systems and not designed for extended or intermittent hypoxia exposure. We have developed a simple hypoxia chamber with off-the-shelf components, and controlled by open-source software for continuous data acquisition of oxygen levels and other environmental factors (temperature, humidity, pressure, light, sound, etc.). Our chamber can accommodate up to two mouse cages and one rat cage at any oxygen level needed, when using a nitrogen concentrator or premixed oxygen/nitrogen tank with a flow regulator, but is also scalable. Our system uses a Python-based script to save data in a text file using modules from the sensor vendor. We utilized Python or R scripts for data analysis, and we have provided examples of data analysis scripts and acquired data for extended exposure periods (≤7 days). By using FLOS (Free-Libre and open-source) software and hardware, we have developed a low-cost and customizable system that can be used for a variety of exposure protocols. This hypoxia/hyperoxia exposure chamber allows for reproducible and transparent data acquisition and increased consistency with a high degree of customization for each experimenter's needs.Entities:
Keywords: hypoxia; inflammation; ischemia; neonate; open-source; stroke
Year: 2022 PMID: 35903067 PMCID: PMC9315218 DOI: 10.3389/fphys.2022.891005
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.755
Major components and prices included in the chamber creation as of June 2022.
| Cage Aspect | Item | Description | Company | Part Number | Variable, Accuracy, Percision | Quantity Used | Quantity per Unit | Cost Per Unit | |
|---|---|---|---|---|---|---|---|---|---|
| Cage Structure | |||||||||
| Glass Tank | Aqueon Glass Aquarium Tank - 20 Gallon | PetCo | — | Chamber | 1 | 1 | $ 49.99 | ||
| Glass Tinting | One-way window film | Amazon | — | Visual Stimulus Reduction | 1 | 1 | $ 11.99 | ||
| Acrylic Sheet | Chamber top - 1/4 x 31.5 x 14.25 in | ACME Plastics | — | Chamber Lid | 1 | 1 | $ 45.00 | ||
| Junction Box | Steel Junction Box, 254 x 254 x 101.6 mm | Newark | 40T7867 | Electrical Input | 1 | 1 | $ 31.60 | ||
| Cable Management | 3.35 inch black cable straps | Amazon | B0881FW8TQ | Electrical Management | Variable | 50 | $ 9.99 | ||
| Airflow | |||||||||
| Bulkhead | 1/2 in female PVC bulkhead fitting | Amazon | — | Airflow - In | 2 | 2 | $ 12.49 | ||
| PVC Tubing | 1/2 in FPT T joint | Home Depot | — | Airflow - In | 3 | 1 | $ 1 - 3 | ||
| — | 1/2 in MPT Valve | Home Depot | — | Airflow - In | 2 | 1 | $ 1 - 3 | ||
| — | 1/2 in MPT Adapters (1/4, 5 and 10 in) | Home Depot | — | Airflow - In | 8 | 1 | $ 1 - 3 | ||
| — | 1/2 in MPT/FPT Elbow | Home Depot | — | Airflow - In | 6 | 1 | $ 1 - 3 | ||
| Brass Tubing | 1/4 in Bulkhead | Amazon | — | Airflow - Out | 2 | 2 | $ 12.89 | ||
| — | 1/4 in R-angle Elbow | Amazon | — | Airflow - Out | 2 | 2 | $ 14.59 | ||
| — | 1/4 in Control Valve | Amazon | — | Airflow - Out | 2 | 2 | $ 14.99 | ||
| Electrical | |||||||||
| Sensor PCB | Custom PCB boards for sensor attachment | OSH Park | Sensor Mount | 5 | 5 | $ 102.50 | |||
| Raspberry Pi | Raspberry Pi 4B, 2 GB RAM | Adafruit | 4292 | Microprocessor | 1 | 1 | $ 45.00 | ||
| PiCamera | Raspberry Pi Camera 2 | Adafruit | 3099 | Image (jpg) (8 megapixel) | 1 | 1 | $ 29.95 | ||
| Power Supply | Adjustable DC Powersupply 110 V - 220 V, Output: 0 - 24 V, 20 A 480 W | Amazon | B08GFSVHLS | Power (Percision: 0.1 V) | 1 | 1 | $ 35.99 | ||
| MCP9808 | High accuracy I2°C Temperature Sensor | Adafruit | 1782 | Temperature (Accuracy: ± 0.25°C, Percision: ± 0.0625°C) | 3 | 1 | $ 4.95 | ||
| BH1750 | Light Sensor I2°C | Adafruit | 4681 | Light (Lux) | 2 | 1 | $ 4.50 | ||
| BME280 | Temperature, Humidity & Pressure sensor I2°C | Adafruit | 2652 | Temperature (± 1.0°C), Humidity (± 3%), Pressure (± 1.0 hPa) | 2 | 1 | $ 14.95 | ||
| CCS811 | VOC and eCO2 Sensor | Adafruit | 3566 | CO2 & VOC | 2 | 1 | $ 19.95 | ||
| ADS1115 | 4 Channel 16 bit Analog to Digital Converter | Adafruit | 1085 | Converter (Percision 8-860 SPS) | 1 | 1 | $ 14.95 | ||
| Voltage Regulator | 3.3 V 800 mA Voltage regulator | Adafruit | 2165 | Voltage (Accuracy: ± 1%) | 5 | 1 | $ 1.25 | ||
| 0.1 uF Capacitor | 0.1 uF capacitor, max of 50 V | Adafruit | 753 | Voltage (Accuracy: -20%/ + 80%) | 5 | 10 | $ 1.95 | ||
| 10 uF Capacitor | 10 uF capacitor, max 50°V low-fequency | Adafruit | 2195 | Voltage (± 20%) | 5 | 10 | $ 1.95 | ||
| Power Jack | Gravitech DC Power Connector 2.1 mm x 5.5 mm | Mouser | 992-CON-SOCJ-2155 | Voltage | 5 | 1 | $ 1.00 | ||
| D-Sub 15 Female | D-Sub High Density DBHD15, Female | Amazon | CNR15HDM-F-10PACK | Connector | 8 | 10 | $ 12.88 | ||
| VGA Cables | UGREEN VGA, 3 meter, male to male coaxial | Amazon | B00OZL3HLO | Cable | 4 | 1 | $ 7.99 | ||
| USB Cables | Micro-USB Cable, R-angle joint | Amazon | B09C5P7YFN | Cable | 1 | 3 | $ 9.99 | ||
| USB Cables | USB-C Cable, R-angle joint | Amazon | B09CG9LZSR | Cable | 1 | 2 | $ 9.99 | ||
| DC Power Cable | DC Power Pigtail, 3ft, Male 5.5 mm x 2.1 mm plug | Amazon | B08PYWN3T7 | Cable | 4 | 2 | $ 9.99 | ||
| DC Cable Extender | 6 ft DC Extention Cord, male to female | Amazon | B074WJZNZD | Cable | 3 | 4 | $ 13.99 | ||
Can be replace with breadboards and jumper cables.
Can also be run with Raspberry Pi 3B, 4B - 1 GB, 4B - 4 GB or 4B - 8 GB.
Additional hardware and custom parts can be found online at: https://github.com/drcgw/hypox-chamber.git and in the Supplemental Material.
FIGURE 1(A) Raspberry Pi Camera version two attached to the Raspberry Pi via a HDMI cable. (B) Central sensor PCB board with ADS1115, MCP9808, BME280 and BH1750 sensors, the rear of the board contains two Aux jacks which allow for Teledyne sensor attachment. (C) External sensor breakout which contains MCP9808, BME280, BH1750 and CCS811. (D) Teledyne oxygen sensors hung from the roof of the chamber utilizing cable management clips. Two sensors are held by cables clips on the sealing, identified by the one and two identifiers.
FIGURE 2Images of current cage design including updated sensors and revised power supply. (A) Front view of the chamber with a 7 inch Raspberry Pi touch screen and visible airflow systems. (B) Rear view of the chamber with power supply container and airflow input tubes visible.
FIGURE 3Example data from a 7-day exposure of the chamber. Data was recorded using a Python script then analyzed with R studio. The data recorded above reports data collected from early experiments utilizing DHT22, ADS1115 and Teledyne oxygen sensor, TSL2591, and MPL3115A2. For this dataset we recorded data every 10 minutes for the entire 7 day exposure time. Since completion of this sampling we replaced these sensors with sensors of higher accuracy and precision.