Literature DB >> 35895715

Information theory: A foundation for complexity science.

Amos Golan1,2, John Harte2,3.   

Abstract

Modeling and inference are central to most areas of science and especially to evolving and complex systems. Critically, the information we have is often uncertain and insufficient, resulting in an underdetermined inference problem; multiple inferences, models, and theories are consistent with available information. Information theory (in particular, the maximum information entropy formalism) provides a way to deal with such complexity. It has been applied to numerous problems, within and across many disciplines, over the last few decades. In this perspective, we review the historical development of this procedure, provide an overview of the many applications of maximum entropy and its extensions to complex systems, and discuss in more detail some recent advances in constructing comprehensive theory based on this inference procedure. We also discuss efforts at the frontier of information-theoretic inference: application to complex dynamic systems with time-varying constraints, such as highly disturbed ecosystems or rapidly changing economies.

Entities:  

Keywords:  data-based models; economies and ecosystems; entropy; information-theoretic inference; theory construction

Year:  2022        PMID: 35895715      PMCID: PMC9388134          DOI: 10.1073/pnas.2119089119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  26 in total

1.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

2.  Maximum entropy tomography.

Authors:  S F Gull; T J Newton
Journal:  Appl Opt       Date:  1986-01-01       Impact factor: 1.980

3.  Identification of direct residue contacts in protein-protein interaction by message passing.

Authors:  Martin Weigt; Robert A White; Hendrik Szurmant; James A Hoch; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

4.  Maximum entropy and the state-variable approach to macroecology.

Authors:  J Harte; T Zillio; E Conlisk; A B Smith
Journal:  Ecology       Date:  2008-10       Impact factor: 5.499

5.  Information-theoretic analysis of phenotype changes in early stages of carcinogenesis.

Authors:  F Remacle; Nataly Kravchenko-Balasha; Alexander Levitzki; R D Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

6.  A method of incorporating rate constants as kinetic constraints in molecular dynamics simulations.

Authors:  Z Faidon Brotzakis; Michele Vendruscolo; Peter G Bolhuis
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

7.  An experimental test of the response of macroecological patterns to altered species interactions.

Authors:  S R Supp; X Xiao; S K M Ernest; E P White
Journal:  Ecology       Date:  2012-12       Impact factor: 5.499

8.  Pairwise maximum entropy models for studying large biological systems: when they can work and when they can't.

Authors:  Yasser Roudi; Sheila Nirenberg; Peter E Latham
Journal:  PLoS Comput Biol       Date:  2009-05-08       Impact factor: 4.475

9.  DynaMETE: a hybrid MaxEnt-plus-mechanism theory of dynamic macroecology.

Authors:  John Harte; Kaito Umemura; Micah Brush
Journal:  Ecol Lett       Date:  2021-03-06       Impact factor: 9.492

10.  Collective Behavior of Place and Non-place Neurons in the Hippocampal Network.

Authors:  Leenoy Meshulam; Jeffrey L Gauthier; Carlos D Brody; David W Tank; William Bialek
Journal:  Neuron       Date:  2017-11-16       Impact factor: 17.173

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