| Literature DB >> 35893686 |
Anthony F Craig1, Mathilde L Schade-Weskott1, Thapelo Rametse2, Livio Heath2, Gideon J P Kriel3, Lin-Mari de Klerk-Lorist4, Louis van Schalkwyk1,4,5, Jessie D Trujillo6, Jan E Crafford1, Juergen A Richt1,6, Robert Swanepoel1.
Abstract
We investigated the possibility that sylvatic circulation of African swine fever virus (ASFV) in warthogs and Ornithodoros ticks had extended beyond the historically affected northern part of South Africa that was declared a controlled area in 1935 to prevent the spread of infection to the rest of the country. We recently reported finding antibody to the virus in extralimital warthogs in the south of the country, and now describe the detection of infected ticks outside the controlled area. A total of 5078 ticks was collected at 45 locations in 7/9 provinces during 2019-2021 and assayed as 711 pools for virus content by qPCR, while 221 pools were also analysed for tick phylogenetics. Viral nucleic acid was detected in 50 tick pools representing all four members of the Ornithodoros (Ornithodoros) moubata complex known to occur in South Africa: O. (O.) waterbergensis and O. (O.) phacochoerus species yielded ASFV genotypes XX, XXI, XXII at 4 locations and O. (O.) moubata yielded ASFV genotype I at two locations inside the controlled area. Outside the controlled area, O. (O.) moubata and O. (O.) compactus ticks yielded ASFV genotype I at 7 locations, while genotype III ASFV was identified in O. (O.) compactus ticks at a single location. Two of the three species of the O. (O.) savignyi complex ticks known to be present in the country, O. (O.) kalahariensis and O. (O.) noorsveldensis, were collected at single locations and found negative for virus. The only member of the Pavlovskyella subgenus of Ornithodoros ticks known to occur in South Africa, O. (P.) zumpti, was collected from warthog burrows for the first time, in Addo National Park in the Eastern Cape Province where ASFV had never been recorded, and it tested negative for the viral nucleic acid. While it is confirmed that there is sylvatic circulation of ASFV outside the controlled area in South Africa, there is a need for more extensive surveillance and for vector competence studies with various species of Ornithodoros ticks.Entities:
Keywords: African swine fever virus (ASFV); Ornithodoros ticks; South Africa; sylvatic circulation
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Year: 2022 PMID: 35893686 PMCID: PMC9331695 DOI: 10.3390/v14081617
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.818
Figure 1Spatial distribution of outbreaks of African swine fever in domestic pigs in relation to the controlled area and the extralimital distribution of warthogs in South Africa, 2016–2021. Approximate coordinates (correct to 0.1 degree) were derived from references cited in the text. The South African Protection of Personal Information Act 4 of 2013 precludes divulging names and accurate coordinates of private property.
Summary of locations where Ornithodoros ticks were collected, numbers of ticks collected and pools tested and found positive for African swine fever virus nucleic acid by qPCR, genotypes of virus identified, numbers of tick pools subjected to 16S rRNA sequencing, and species of ticks identified.
| Location | Collection | Ticks | Pools | ASFV qPCR | ASFV p72 | 16S rRNA | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Province 1 | Type | QDGC 2 | Sites | Collected | Tested | Positive | Genotype | Sequences | Tick Species |
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| LP01 | LP | Farm | E029S022CB | 1 | 218 | 7 | 6 |
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| LP02 | LP | Farm | E027S024CA | 1 | 2 | 1 |
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| LP03 | LP | Farm | E026S024DB | 3 | 160 | 27 | 1 | XXII | 2 |
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| GKNP01 | LP | Nature Reserve | E031S024AC | 1 | 82 | 12 | 1 | XX | 12 |
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| GKNP02 | LP | Nature Reserve | E031S022CA | 1 | 316 | 46 | 2 |
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| GKNP03 | LP | Nature Reserve | E031S022CA | 1 | 26 | 4 | 2 |
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| GKNP04 | LP | Nature Reserve | E031S023CC | 1 | 192 | 64 | 2 |
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| GKNP05 | LP | Nature Reserve | E031S023DC | 1 | 115 | 15 | 2 |
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| GKNP06 | LP | Nature Reserve | E031S023CD | 1 | 60 | 11 | 1 |
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| GKNP07 | MP | Nature Reserve | E031S024BA | 1 | 104 | 31 | 2 | XXI | 31 |
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| GKNP08 | MP | Nature Reserve | E031S024BA | 1 | 150 | 26 | 1 |
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| GKNP09 | MP | Nature Reserve | E031S024BC | 1 | 58 | 10 | 1 |
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| GKNP10 | MP | Nature Reserve | E031S024BC | 1 | 23 | 8 | 1 |
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| GKNP11 | MP | Nature Reserve | E031S024DB | 1 | 129 | 36 | 1 |
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| GKNP12 | MP | Nature Reserve | E031S024DD | 1 | 84 | 8 | 1 |
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| GKNP13 | MP | Nature Reserve | E031S024DB | 1 | 157 | 15 | 1 |
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| GKNP14 | MP | Nature Reserve | E031S025BA | 4 | 558 | 25 | 2 |
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| GKNP15 | MP | Nature Reserve | E031S025BA | 1 | 56 | 10 | 2 |
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| GKNP16 | MP | Nature Reserve | E031S025BC | 1 | 219 | 57 | 1 |
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| GKNP17 | MP | Nature Reserve | E031S025BD | 1 | 120 | 14 | 1 |
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| GKNP18 | MP | Nature Reserve | E031S025BD | 4 | 254 | 14 | 4 | XX, XXI | 4 |
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| NWP01 | NWP | Farm | E026S024CD | 5 | 148 | 25 | 3 | Ia | 3 |
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| NWP02 | NWP | Farm | E026S025AA | 3 | 12 | 1 | 1 |
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| NWP03 | NWP | Farm | E026S025AA | 1 | 136 | 10 | 2 | Ib | 3 |
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| NWP04 | NWP | Nature Reserve | E026S025CA | 1 | 7 | 2 | 1 | Ib | 1 |
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| NWP05 | NWP | Farm | E026S025CA | 2 | 227 | 37 | 6 | Ib | 5 |
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| MP01 | MP | Nature Reserve | E029S025CA | 10 | 0 | |||||
| GP01 | GP | Nature Reserve | E028S025BC | 1 | 8 | 5 | 4 |
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| GP02 | GP | Nature Reserve | E028S025AD | 3 | 92 | 6 | 2 |
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| GP03 | GP | Farm | E028S025CB | 1 | 1 | 1 | 1 |
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| GP04 | GP | Nature Reserve | E028S025BA | 1 | 10 | 5 | 5 |
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| GP05 | GP | Nature Reserve | E028S025BC | 1 | 10 | 4 | 2 |
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| GP06-GP07 | GP | Farms | E027S026CB | 2 | 0 | |||||
| GP08-GP11 | GP | Farms | E027S026CA | 4 | 0 | |||||
| GP12-GP13 | GP | Farms | E028S025DA | 2 | 0 | |||||
| GP14-GP18 | GP | Farms | E028S025CB | 5 | 0 | |||||
| MNP01 | NCP | Nature Reserve | E024S029AB | 6 | 287 | 54 | 4 | Ia, Ic | 53 |
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| NCP01 | NCP | Farm | E024S028BC | 3 | 316 | 51 | 19 | Ia, Ib, Ic 3 | 19 |
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| NCP02 | NCP | Farm | E024S028AD | 2 | 86 | 11 | 3 | Ia,b | 4 |
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| NCP03 | NCP | Nature Reserve | E024S028BC | 6 | 65 | 9 | 1 |
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| NCP04 4 | NCP | Nature Reserve | E024S028CB | 1 | 32 | 3 | 1 | Ia | 3 |
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| NCP04 4 | NCP | Nature Reserve | E024S028CB | 1 | 27 | 1 | 1 |
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| NCP05 | NCP | Farm | E023S028DD | 1 | 53 | 2 | 1 |
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| NCP06 | NCP | Farm | E022S028CC | 3 | 31 | 3 | 1 | I | 1 |
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| FSP01 | FSP | Nature Reserve | E024S028DD | 1 | 2 | 1 | 1 |
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| FSP02 | FSP | Farm | E025S029AC | 3 | 97 | 7 | 1 | Ic | 3 |
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| FSP03 | FSP | Farm | E024S029BD | 1 | 8 | 1 | 1 | III | 1 |
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| AENP01 | ECP | Nature Reserve | E025S033BD | 1 | 7 | 1 | 1 |
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| AENP02 | ECP | Nature Reserve | E025S033BD | 1 | 234 | 23 | 23 |
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| AENP03 | ECP | Nature Reserve | E025S033DB | 2 | 91 | 5 | 5 |
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| ECP01 | ECP | Farm | E024S033AB | 2 | 8 | 2 | 1 |
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| 105 | 5078 | 711 | 50 | 221 | ||||||
1 ECP = Eastern Cape Province; FSP = Free State Province; GP = Gauteng Province; LP = Limpopo Province; MP = Mpumalanga Province; NCP = Northern Cape Province; NWP = North West Province. 2 QDGC = Quarter degree grid cell. 3 Three tick pools yielded ASFV genotypes Ia plus Ib. 4 Two species of tick were collected on same property.
Figure 2Neighbour-joining tree based on partial mitochondrial 16S rRNA gene sequence (263 nt) depicting phylogenetic relationships between 11 unique sequences generated from African Ornithodoros (Ornithodoros) ticks in the present study (GenBank accession numbers in bold) and 19 representative unique Ornithodoros species sequences from Genbank, mainly from South Africa (RSA) but including O. (O.) porcinus Walton, 1962 from Tanzania (TAN) and O. (O.) savignyi (Audouin, 1826) from Sudan (SUD), plus the ixodid tick Amblyomma hebraeum as an outlier. Percentage bootstrap support values were derived following 10,000 replications. Evolutionary analyses were conducted in MEGA X.
Figure 3Spatial distribution of locations where different Ornithodoros tick species were collected during the present study. Locations where African swine fever virus nucleic acid was detected in ticks (closed symbols) are shown in relation to locations where viral nucleic acid was not found in ticks (open symbols).
Figure 4Neighbour-joining tree based on partial C-terminal p72 gene sequence (399 nt) of African swine fever virus depicting phylogenetic relationships between 20 representative sequences detected in African Ornithodoros (Ornithodoros) ticks in the present study (GenBank accession numbers in bold) and 29 representative sequences of the genotypes known to occur in South Africa. Only one unique sequence detected per tick species per collection site in the present study is included in the analysis and these comprise 5 genotypes of virus. Percentage bootstrap support values were derived following 10,000 replications. Evolutionary analyses were conducted in MEGA X.
Figure 5Spatial distribution patterns of the African swine fever virus genotypes identified in ticks during the present study (open symbols) summarized on a regional basis in relation to virus genotypes identified in outbreaks of African swine fever in domestic pigs (closed symbols) from 2016–2021.
Figure 6Updated distribution ranges of the currently recognized species of Ornithodoros ticks in South Africa based on locations where ticks were collected during the present study together with locations where ticks with cognate partial mitochondrial 16S RNA gene sequences or morphological identity were previously reported by sources cited in the text.
Abridged evolution of the taxonomy of the Afrotropical members of the subgenus Ornithodoros (Ornithodoros) (Acari: Ixodida: Argasidae: Ornithodorinae).
| Original Description | Walton, 1962 | Van der | Walton, 1979 | Bakkes et al., 2018 |
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| Argas savignyi Audouin, 1827 * | O. savignyi | O. savignyi |
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* Subsequently transferred to genus Ornithodoros, Koch 1844. † Synonymized with O. savignyi, Theiler and Hoogstraal, 1955; resurrected, Bakkes et al., 2018.