| Literature DB >> 35887409 |
Xin-Cun Wang1, Wen-Ying Zhuang1.
Abstract
Species of Talaromyces are cosmopolitan and ubiquitous, and some are of industrial and medicinal importance. Species of Talaromyces have been successively reported in China. During our examinations of samples collected from southwestern China, two new species belonging to Talaromyces sect. Talaromyces were further discovered based on phylogenetic analyses and morphological comparisons. Talaromyces ginkgonis sp. nov., isolated from a partially colonized fruit of Ginkgo biloba, differs from closely-related fungi in the combination of conidia ellipsoidal, smooth and 3.5-4 × 2-3 μm, no growth on CYA at 37 °C and sequence divergences; T. shilinensis sp. nov. is distinguished from its related allies in the combination of smooth conidia, colonies 10-11 mm diameter on CYA at 25 °C and sequence differences. Detailed descriptions and illustrations of the new taxa are given.Entities:
Keywords: DNA barcodes; fungal biodiversity; phylogeny; taxonomy
Year: 2022 PMID: 35887409 PMCID: PMC9319149 DOI: 10.3390/jof8070647
Source DB: PubMed Journal: J Fungi (Basel) ISSN: 2309-608X
Fungal species and sequences used in phylogenetic analyses of Talaromyces sect. Talaromyces.
| Species | Strain | Locality | Substrate | ITS | BenA | CaM | RPB2 |
|---|---|---|---|---|---|---|---|
| CBS 289.48 T | USA | textile | KF741995 | KF741929 | KF741975 | MH793099 | |
| CGMCC 3.18211 T | China: Beijing | indoor air | KU866657 | KU866844 | KU866741 | KU867001 | |
| CBS 142379 T | USA | human bronchoalveolar lavage | LT558969 | LT559086 | LT795596 | LT795597 | |
| CBS 140373 T | Colombia | leaf litter | KX011509 | KX011490 | KX011502 | MN969186 | |
| CBS 132696 T | South Africa | house dust | JX315660 | JX315623 | KF741937 | JX315698 | |
| KACC 46611 T | South Korea | dried root of | KF183638 | KF183640 | KJ885259 | KX961275 | |
| CBS 142939 T | Netherlands | soil | MF574592 | MF590098 | MF590104 | MN969199 | |
| CBS 312.59 T | Japan | soil | JN899375 | KF741916 | KF741950 | KM023287 | |
| NRRL 28750 T | Ghana | soil | MH793045 | MH792917 | MH792981 | MH793108 | |
| CBS 141835 T | China: Yunnan | soil | MN864274 | MN863343 | MN863320 | MN863332 | |
| CBS 314.59 T | USA | soil | JN899380 | KF741917 | KF741951 | KX961285 | |
| CGMCC 3.15865 T | China: Yunnan | soil | MK837953 | MK837937 | MK837945 | MK837961 | |
| CBS 137102 T | Australia | soil under pasture | KF741991 | KF741922 | KF741971 | KX961284 | |
| CGMCC 3.15862 T | China: Yunnan | soil | MK837955 | MK837939 | MK837947 | MK837963 | |
| CGMCC 3.18200 T | China: Beijing | indoor air | KU866649 | KU866837 | KU866733 | KU866993 | |
| CBS 141833 T | China: Beijing | soil | MN864269 | MN863338 | MN863315 | MN863328 | |
| CBS 112002 T | China: Taiwan | soil | JN899319 | HQ156944 | KF741934 | KM023311 | |
| NRRL 58168 T | USA | air | MH793056 | MH792928 | MH792992 | MH793119 | |
| KACC 46617 T | South Korea | dried roots of | KF183639 | KF183641 | KJ885266 | KM023299 | |
| CBS 142756 T | Spain | herbivore dung | LT899794 | LT898319 | LT899776 | LT899812 | |
| ACCC 39155 T | China: Beijing | endophyte from root of | KY053254 | KY053228 | KY053246 | n.a. | |
| CBS 412.89 T | Japan | cultivated soil | JN899327 | JX494306 | KF741959 | KM023282 | |
| CGMCC 3.15692 T | China: Hainan | forest soil | KY007095 | KY007111 | KY007103 | KY112593 | |
| NRRL 58121 T | USA | floor swab | MH793055 | MH792927 | MH792991 | MH793118 | |
| CBS 322.48 T | France | canvas | JN899342 | JX091384 | KF741955 | JN121491 | |
| CBM PF1203 T | Japan | soil | AB176617 | KJ865733 | KJ885271 | KM023303 | |
| CBS 102801 T | Spain | unknown | JN899392 | JX091376 | KF741933 | KX961283 | |
| CBS 310.38 T | New Zealand | unknown | JN899360 | JX494302 | KF741949 | JF417426 | |
| CBS 113134 T | Colombia | leaf litter | KX011510 | KX011489 | KX011501 | MN969188 | |
| CBS 272.86 T | India |
| JN899377 | MN969408 | KF741945 | KM023293 | |
| CBS 193.69 T | Netherlands | soil | KF741979 | KF741912 | KF741942 | MN969156 | |
| CGMCC 3.18210 T | China: Beijing | indoor air | KU866656 | KU866843 | KU866740 | KU867000 | |
| CBS 751.74 T | Ecuador | soil under | JN899358 | JX091388 | KF741966 | KX961280 | |
| 10725 T | China: Sichuan | rotten fruit of |
|
|
|
| |
| CGMCC 3.16101 T | China: Jiangsu | riverside soil | MZ045695 | MZ054634 | MZ054637 | MZ054631 | |
| CBS 100534 T | Japan | soil | JN899331 | JX494308 | KF741931 | KX961278 | |
| CBS 152.65 T | UK | swamp soil | JN899332 | JX091387 | KJ885290 | KX961282 | |
| CBS 139564 T | Iran | hypersaline soil | KP851981 | KP851986 | KP851995 | MN969190 | |
| CBS 136666 T | Canada | forest soil | KF741987 | KF741921 | KF741967 | MN969158 | |
| CGMCC 3.15689 T | China: Shandong | soil | KY007088 | KY007104 | KY007096 | KY112586 | |
| CBS 225.66 T | China | soil | JN899395 | JX091380 | KJ885257 | KX961277 | |
| NRRL 35823 T | USA | air | MH793052 | MH792924 | MH792988 | MH793115 | |
| CBS 317.63 T | South Africa | apple juice | JN899333 | JX091382 | KF741952 | KM023292 | |
| CGMCC 3.15690 T | China: Shanghai | forest soil | KY007090 | KY007106 | KY007098 | KY112588 | |
| NRRL 3724 T | Italy | rhizosphere of an apple tree | MH909513 | MH909406 | MH909459 | MH909567 | |
| CGMCC 3.18013 T | China: Hunan | soil | KX447531 | KX447530 | KX447528 | KX447527 | |
| CBS 388.87 T | Vietnam |
| JN899344 | JX091389 | KF741958 | KM023283 | |
| CBS 756.96 T | China: Taiwan | soil | MN431394 | KJ865727 | KJ885274 | KX961276 | |
| CBS 142494 T | Brazil | nest of | MF278326 | LT855561 | LT855564 | LT855567 | |
| CCTCC M 2012167 T | China: Jiangsu | rhizosphere soil of | MW130720 | MW147759 | MW147760 | MW147762 | |
| CGMCC 3.15415 T | China: Tibet | leaf sample | KP765385 | KP765381 | KP765383 | MN969165 | |
| CBS 138208 T | South Africa | house dust | KJ775720 | KJ775213 | KJ775425 | KX961281 | |
| CBS 128.89 T | Panama | soil | JN899362 | HQ156948 | KF741936 | KM023284 | |
| CGMCC 3.15822 T | China: Guizhou | soil | MK837956 | MK837940 | MK837948 | MK837964 | |
| CBS 631.66 T | France | PVC | JN899382 | JX091381 | KF741964 | KM023291 | |
| NRRL 62170 T | USA | effluent of water treatment plant | MH793075 | MH792948 | MH793012 | MH793139 | |
| CBS 321.48 T | USA | unknown | JN899317 | JX494305 | KF741954 | KM023294 | |
| CBS 143041 T | Spain | herbivore dung | LT899796 | LT898323 | LT899778 | LT899814 | |
| CBS 113145 T | Colombia | leaf litter | KX011504 | KX011487 | KX011500 | MN969189 | |
| CBS 286.36 T | unknown | unknown | JN899372 | JX315639 | KF741947 | JX315709 | |
| CGMCC 3.15414 T | China: Tibet | leaf sample | KP765384 | KP765380 | KP765382 | MN969164 | |
| CBS 142382 T | USA | human bronchoalveolar lavage | LT558970 | LT559087 | LT795600 | LT795601 | |
| GUCC 190040.1 T | China: Guizhou | endophyte of | MZ221603 | MZ333143 | MZ333137 | MZ333141 | |
| CBS 132704 T | UK | aircraft fuel tank | JX315662 | JX315629 | KF741938 | JX315700 | |
| CBS 342.59 T | USA | soil | JN899384 | JX494309 | KF741956 | KM023296 | |
| CBS 141834 T | China: Yunnan | soil | MN864272 | MN863341 | MN863318 | MN863331 | |
| CBS 138204 T | Mexico | house dust | KJ775713 | KJ775206 | KJ775422 | MN969146 | |
| XCW_SN259 T | China: Yunnan | associated with |
|
|
|
| |
| CBS 475.88 T | Thailand | forest soil | JN899385 | JX091379 | KF741960 | KM023279 | |
| NRRL 62165 T | USA | soil | MH793074 | MH792947 | MH793011 | MH793138 | |
| CGMCC 3.16003 T | China: Beijing | soil | MT077182 | MT083924 | MT083925 | MT083926 | |
| CBS 135665 T | South Africa | soil | JX091471 | JX091605 | JX140683 | MN969157 | |
| CBS 375.48 T | USA | rotting wood | JN899348 | KM111288 | KF741957 | KM023280 | |
| CBS 408.93 T | Netherlands | AIDS patient | JX315674 | JX315633 | JX315646 | JX315712 | |
| CBS 550.89 T | Cuba | leaf litter of | MN431418 | MN969441 | MN969360 | MT156347 | |
| CBS 133147 T | Thailand | forest soil | JX898041 | JX494294 | KF741940 | KM023307 | |
| NRRL 62151 T | USA | soil from prairie | MH793071 | MH792944 | MH793008 | MH793135 | |
| CBS 500.78 T | Columbia | soil | KF741984 | KF741918 | KF741961 | KX961279 | |
| NRRL 1050 T | USA | soil | KF741994 | KF741928 | KF741944 | KM023306 | |
| IMI 134755 T | UK | unknown | MN431395 | MN969412 | MN969319 | MN969161 | |
| CBS 114.72 T | Australia | soil | AF285782 | JX494310 | KF741935 | JN121430 | |
| CBS 252.87 T | Australia | soil | JN899314 | JX091385 | KF741943 | JF417422 | |
| CGMCC 3.20481 T | China: Chongqing | soil | MZ356356 | MZ361347 | MZ361354 | MZ361361 | |
| CGMCC 3.17995 T | China: Hainan | soil | KU644580 | KU644581 | KU644582 | MZ361364 | |
| KUMCC 18-0208 T | China: Yunnan | rhizosphere soil | MT152339 | MT161683 | MT178251 | n.a. | |
| CGMCC 3.16102 T | China: Zhejiang | mudflat soil | MZ045697 | MZ054636 | MZ054639 | MZ054633 | |
| CBS 373.48 T | USA | unknown | JN899354 | KF114803 | KJ885281 | JF417432 |
GenBank accession numbers in bold indicating the newly generated sequences. Full names of the culture collection centers: ACCC (Agricultural Culture Collection of China); CBS (Centraalbureau voor Schimmelcultures, now Westerdijk Fungal Biodiversity Institute); CCTCC (China Center for Type Culture Collection); CGMCC (China General Microbiological Culture Collection); GUCC (Culture Collection at Department of Plant Pathology, Agriculture College, Guizhou University); IMI (CABI Bioscience); KACC (Korean Agricultural Culture Collection); KUMCC (Kunming Institute of Botany Culture Collection); NRRL (USDA-ARS Culture Collection).
Detailed characteristics of datasets of Talaromyces sect. Talaromyces.
| Gene Fragment | No. of Seq. | Length of Alignment (bp) | No. of Variable Sites | No. of Parsimony-Informative Sites | Model for BI |
|---|---|---|---|---|---|
| BenA | 87 | 643 | 246 | 200 | K81uf + I + G |
| CaM | 87 | 581 | 305 | 260 | SYM + I + G |
| RPB2 | 85 | 978 | 359 | 319 | TVM + I + G |
| BenA + CaM + RPB2 | 87 | 2202 | 910 | 779 | GTR + I + G |
Full names of the used models: GTR + I + G (General Time Reversible model with unequal base frequencies with Invariable sites and Gamma distribution); K81uf + I + G (Kimura 3-parameter model with unequal base frequencies with Invariable sites and Gamma distribution); SYM + I + G (Symmetrical model with Invariable sites and Gamma distribution); TVM + I + G (Transversion model with Invariable sites and Gamma distribution).
Figure 1ML phylogeny of Talaromyces sect. Talaromyces inferred from the combined (BenA + CaM + RPB2) dataset. Bootstrap values ≥70% (left) or posterior probability values ≥0.95 (right) are indicated at nodes. Asterisk denotes 100% bootstrap or 1.00 posterior probability.
Figure 2Colonial and microscopic morphology of Talaromyces ginkgonis (10725). (A) Colony phenotypes (25 °C, 7 days; top row left to right, obverse CYA, MEA, YES, and PDA; bottom row left to right, reverse CYA, MEA, YES, and PDA); (B–F) Conidiophores; (G) Conidia. Bars: B = 15 µm, applies to C; D = 12.5 µm; E = 10 µm, applies to F and G.
Morphological comparisons of new Talaromyces species and their closely related species.
| Species | CYA 25 °C (mm) | CYA 37 °C (mm) | MEA (mm) | YES (mm) | Conidiophore | Conidia Shape | Conidia Wall | Conidia Size (µm) | Reference |
|---|---|---|---|---|---|---|---|---|---|
|
| 22–23 | 22–23 | 36–37 | 28–29 | biverticillate | globose | strikingly roughened | 3–4 | [ |
|
| 27–30 | no growth | 47–48 | 40–41 | biverticillate | ellipsoidal to fusiform | finely rough to rough with spiral striations | 2.5–4.5 × 2–3 | [ |
|
| 25–27 | 3–4 | 48–50 | 43–44 | biverticillate | ellipsoidal | smooth to finely rough | 3–4 × 1.5–3.5 | [ |
|
| 9–10 | 19–20 | 31–32 | 24–26 | monoverticillate | ellipsoidal | smooth | 2–3 × 1.5–2.5 | [ |
|
| 22–25 | 18–20 | 48–51 | 25–28 | biverticillate | pyriform to ellipsoidal | smooth | 2.5–3 × 2–2.5 | [ |
|
| 13–25 | 5–10 | 15–27 | 17–25 | mono- to biverticillate | subglobose | smooth | 2.5–4 × 2–3 | [ |
|
| 9–13 | no growth | 19–21 | 12–13 | biverticillate | ellipsoidal to fusiform | smooth | 3.5–4 × 2–3 | This study |
|
| 15–25 | no growth | 37–44 | 28–35 | biverticillate | ovoidal to fusiform | finely rough to rough with spiral striations | 2.5–3.5 × 1.5–2.5 | [ |
|
| 5–6 | no growth | 20–25 | 8–10 | biverticillate | ellipsoidal to fusiform | smooth to finely rough | 2–4 × 1.5–3 | [ |
|
| 10–11 | no growth | 36–38 | 18–19 | biverticillate | ellipsoidal to broad fusiform | smooth | 2.5–3.5 × 2–2.5 | This study |
Figure 3Colonial and microscopic morphology of Talaromyces shilinensis (XCW_SN259). (A) Colony phenotypes (25 °C, 7 days; top row left to right, obverse CYA, MEA, YES, and PDA; bottom row left to right, reverse CYA, MEA, YES, and PDA); (B–F) Conidiophores; (G) Conidia. Bars: B = 15 µm; C = 12.5 µm; D = 10 µm, applies to E and G; F = 7.5 µm.