| Literature DB >> 35885807 |
Vlad Radu Puia1,2, Roxana Adelina Lupean3, Paul Andrei Ștefan4,5,6, Alin Cornel Fetti1,2, Dan Vălean1, Florin Zaharie1,2, Ioana Rusu7, Lidia Ciobanu8, Nadim Al-Hajjar1,2.
Abstract
The ability of texture analysis (TA) features to discriminate between different types of infected fluid collections, as seen on computed tomography (CT) images, has never been investigated. The study comprised forty patients who had pathological post-operative fluid collections following gastric cancer surgery and underwent CT scans. Patients were separated into six groups based on advanced microbiological analysis of the fluid: mono bacterial (n = 16)/multiple-bacterial (n = 24)/fungal (n = 14)/non-fungal (n = 26) infection and drug susceptibility tests into: multiple drug-resistance bacteria (n = 23) and non-resistant bacteria (n = 17). Dedicated software was used to extract the collections' TA parameters. The parameters obtained were used to compare fungal and non-fungal infections, mono-bacterial and multiple-bacterial infections, and multiresistant and non-resistant infections. Univariate and receiver operating characteristic analyses and the calculation of sensitivity (Se) and specificity (Sp) were used to identify the best-suited parameters for distinguishing between the selected groups. TA parameters were able to differentiate between fungal and non-fungal collections (ATeta3, p = 0.02; 55% Se, 100% Sp), mono and multiple-bacterial (CN2D6AngScMom, p = 0.03); 80% Se, 64.29% Sp) and between multiresistant and non-multiresistant collections (CN2D6Contrast, p = 0.04; 100% Se, 50% Sp). CT-based TA can statistically differentiate between different types of infected fluid collections. However, it is unclear which of the fluids' micro or macroscopic features are reflected by the texture parameters. In addition, this cohort is used as a training cohort for the imaging algorithm, with further validation cohorts being required to confirm the changes detected by the algorithm.Entities:
Keywords: bacteriology; computed tomography; gastric cancer; infected peritoneal collections; surgery; texture-based analysis
Year: 2022 PMID: 35885807 PMCID: PMC9324114 DOI: 10.3390/healthcare10071280
Source DB: PubMed Journal: Healthcare (Basel) ISSN: 2227-9032
Figure 1Flow chart. CT, computer tomography, patient groups.
Figure 2Synthetic demonstration of the region-of-interest (ROI) placement using (A) a computed tomography image of a 55-year-old patient with Enterococcus spp.—infected collection; the fluid collection is indicated with red arrow (B) the researcher placed a seed (green) within the collection and (C) the software automatically delineated the collection based on gradient and geometry coordinates.
Texture parameters.
| Parameters | Class | Computational Variations | Computation Method |
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| Teta 1–4, Sigma | ARM | - | - |
| GrNonZeros, percentage | AR | - | 4 bits/pixel |
| Perc.01–99%, Skewness, Kurtosis, Variance, Mean | Histogram | - | - |
| GLevNonU, LngREmph, RLNonUni, ShrtREmp, Fraction | RLM | 4 directions | 6 bits/pixel |
| InvDfMom, SumAverg, | COM | 4 directions | 6 bits/pixel; 5 |
| WavEn | WT | 4 frequency bands | 5 scales |
AR, Absolute gradient; RLM, Run Length Matrix; COM, Co-occurrence Matrix; ARM, Auto-regressive Model; WT, Wavelet transformation; Mean, histogram’s mean; Variance, histogram’s variance; Skewness, histogram’s skewness; Kurtosis, histogram’s kurtosis; Perc.01–99%, 1st to 99th percentile; GrMean, absolute gradient mean; GrVariance, absolute gradient variance; GrSkewness, absolute gradient skewness; GrKurtosis, absolute gradient kurtosis; GrNonZeros, percentage of pixels with nonzero gradient); RLNonUni, run-length nonuniformity; GLevNonU, grey level nonuniformity; LngREmph, long-run emphasis; ShrtREmp, short-run emphasis; Fraction, the fraction of image in runs; AngScMom, angular second moment; Contrast, contrast; Correlat, correlation; SumOfSqs, the sum of squares; InvDfMom, inverse difference moment; SumAverg, sum average; SumVarnc, sum variance; SumEntrp, sum entropy; Entropy, entropy; DifVarnc, the difference of variance; DifEntrp, the difference of entropy; Teta 1–4, parameters θ1–θ14; Sigma, parameter σ; WavEn, wavelet energy.
Univariate analysis results. Bold values are statistically significant.
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| ATeta3 | 0.23 | 0.18–0.43 | 0.42 | 0.36–0.52 |
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| ATeta4 | 0.05 | 0.01–0.16 | −0.009 | −011–0.04 |
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| CZ1D6Contrast | 0.34 | 0.14–2.6 | 0.87 | 0.10–8.53 | 0.43 |
| CN2D6Correlat | 0.09 | 0.06–0.15 | 0.04 | −0.002–0.12 | 0.10 |
| RND6RLNonUni | 140.61 | 59.45–653.45 | 498.60 | 38.69–1580.42 | 0.37 |
| CH4D6Correlat | 0.07 | 0.04–0.13 | 0.07 | 0.004–0.10 | 0.40 |
| GD4Skewness | 1.17 | 0.28–1.34 | 0.36 | 0.11–2.02 | 0.49 |
| CV1D6Contrast | 0.32 | 0.13–1.97 | 0.68 | 0.08–7.11 | 0.49 |
| RVD6RLNonUni | 95.78 | 43.84–571.62 | 506.96 | 22.78–1450.85 | 0.43 |
| CH1D6AngScMom | 0.35 | 0.13–0.73 | 0.19 | 0.01–0.80 | 0.40 |
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| CN5D6Correlat | 0.08 | 0.02–0.15 | 0.01 | −0.03–0.06 | 0.04 |
| ATeta2 | −0.18 | −0.25–0.01 | −0.15 | −0.28–−0.03 | 0.75 |
| CN2D6AngScMom | 0.11 | 0.04–0.30 | 0.04 | −0.003–0.08 |
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| WavEnHL_s-2 | 0.47 | 0.13–3.02 | 0.74 | 0.16–16.06 | 0.34 |
| RVD6LngREmph | 27.84 | 3.75–539.08 | 9.43 | 1.62–61.38 | 0.13 |
| CH1D6Contrast | 0.23 | 0.05–1.31 | 0.40 | 0.12–5.99 | 0.19 |
| RZD6GLevNonU | 223.30 | 117.44–505.92 | 169.84 | 90.70–228.98 | 0.25 |
| RHD6LngREmph | 35.00 | 4.31–513.91 | 11.68 | 1.69–89.29 | 0.15 |
| ATeta4 | −0.02 | −0.12–0.04 | 0.03 | 0.01–0.14 | 0.12 |
| Perc01 | 1001.5 | 113.5–1019.5 | 90.00 | 78.00–994.25 | 0.02 |
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| RND6GLevNonU | 187.76 | 120.15–384.61 | 157.79 | 100.10–212.03 | 0.29 |
| CH1D6DifVarnc | 1.33 | 0.13–2.35 | 0.26 | 0.06–1.31 | 0.24 |
| GD4Kurtosis | 0.26 | −1.08–0.50 | 0.19 | −0.44–12.85 | 0.47 |
| RHD6GLevNonU | 165.87 | 91.77–369.11 | 131.18 | 89.00–184.78 | 0.24 |
| ATeta1 | 0.51 | 0.33–0.58 | 0.59 | 0.36–0.69 | 0.34 |
| CN5D6Correlat | 0.01 | −0.02–0.05 | 0.03 | −0.01–0.09 | 0.43 |
| WavEnLL_s-1 | 10,243.16 | 4182.69–12,237.74 | 10398 | 4286.96–16013.20 | 0.37 |
| CN4D6Correlat | 0.04 | −0.04–0.06 | 0.03 | 0.00–0.09 | 0.53 |
| Kurtosis | 0.47 | 0.21–1.25 | 0.73 | 0.24–4.71 | 0.47 |
| CN2D6 | 0.04 | 0.00–0.07 | 0.07 | 0.04–0.21 |
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p-value, statistical significance value; bold values are statistically significant. IQR, interquartille range; Mean, histogram’s mean; Variance, histogram’s variance; Skewness, histogram’s skewness; Kurtosis, histogram’s kurtosis; Perc.01–99%, 1–99% percentile; GrMean, absolute gradient mean; GrVariance, absolute gradient variance; GrSkewness, absolute gradient skewness; GrKurtosis, absolute gradient kurtosis; GrNonZeros; RLNonUni, run-length nonuniformity; GLevNonU, grey level nonuniformity; LngREmph, long-run emphasis; ShrtREmp, (short-run emphasis; Fraction, the fraction of image in runs; AngScMom, angular second moment; Contrast, contrast; Correlat, correlation; SumOfSqs, the sum of squares; InvDfMom, inverse difference moment; SumAverg, sum average; SumVarnc, sum variance; SumEntrp, sum entropy; Entropy, entropy; DifVarnc, difference variance; DifEntrp, difference entropy; Teta 1–4, parameters θ1–θ4; Sigma, parameter σ; WavEn, wavelet energy.
Receiver operating characteristics’ analysis results.
| Parameter | Sign.lvl. | AUC | J | Cut-Off | Se (%) | Sp |
|---|---|---|---|---|---|---|
| Fungi vs. non-fungi | ||||||
| ATeta3 | 0.0137 | 0.765 (0.564–0.906) | 0.5556 | ≤0.23 | 55.5 (21.2–86.3) | 100 (81.5–100) |
| ATeta4 | 0.003 | 0.772 (0.571–0.91) | 0.5 | >−0.024 | 100 (66.4–100) | 50 (26–74) |
| Combined Teta model | <0.0001 | 0.877 (0.717–1) | 0.72 | >0.49 | 77.78 (40.0–97.2) | 94.44 (72.7–99.9) |
| Mono vs. poli microbian | ||||||
| CN2D6AngScMom | 0.0129 | 0.757 (0.541–0.907) | 0.44 | >0.05 | 80 (44.4–97.5) | 64.29 (35.1–87.2) |
| Multirezistent vs. non multi | ||||||
| CN2D6Contrast | 0.0173 | 0.74 (0.528–0.893) | 0.5 | ≤0.098 | 100 (75.3–100) | 50 (21.1–78.9) |
Sign.lvl., significance level; AUC, area under the curve; J, Youden index; Se, Sensitivity; Sp, Specificity; Between the brackets, values corresponding to the 95% confidence interval.
Figure 3Display of ROC curves of (A) ATeta3, ATeta4 and Combined Teta model for the diagnosis of fungal infections; (B) CN2D6AngScMom for the diagnosis of fungal infections; (C) CN2D6Contrast for the diagnosis of multiresistant infections.