| Literature DB >> 30038677 |
Ali Abbasian Ardakani1, Alireza Rasekhi2, Afshin Mohammadi2, Ebrahim Motevalian3, Bahareh Khalili Najafabad1.
Abstract
PURPOSE: Papillary thyroid carcinoma (PTC) is the most common thyroid cancer, and cervical lymph nodes (LNs) are the most common extrathyroid metastatic involvement. Early detection and reliable diagnosis of LNs can lead to improved cure rates and management costs. This study explored the potential of texture analysis for texture-based classification of tumour-free and metastatic cervical LNs of PTC in ultrasound imaging.Entities:
Keywords: computer-assisted; diagnosis; lymph nodes; pattern recognition; thyroid carcinoma; ultrasonography
Year: 2018 PMID: 30038677 PMCID: PMC6047085 DOI: 10.5114/pjr.2018.75017
Source DB: PubMed Journal: Pol J Radiol ISSN: 1733-134X
Figure 1A sample distribution of feature for two classes. The samples marked cannot be properly classified
Figure 2Overview of general texture analysis process in the ultrasound lymph node images
Figure 3Evolution of two reduction methods for texture analysis. A) Fisher coefficient with 10 highest values, (B) probability of classification error and average correlation coefficient (POE+ACC) with 10 lowest values
Summary of 10 best Fisher features with highest values
| Feature rank | Normalisation | |||||
|---|---|---|---|---|---|---|
| Default | 3sigma | 1-99% | ||||
| Feature | Fisher coefficient | Feature | Fisher coefficient | Feature | Fisher coefficient | |
| 1 | WavEnLH_s-4 | 5.1055 | WavEnLL_s-3 | 7.0694 | WavEnLH_s-4 | 4.2902 |
| 2 | WavEnLH_s-3 | 3.3025 | WavEnLL_s-2 | 5.6225 | WavEnLH_s-3 | 3.1058 |
| 3 | WavEnLH_s-5 | 2.3952 | WavEnLL_s-4 | 5.2312 | WavEnLH_s-5 | 2.9345 |
| 4 | WavEnLH_s-2 | 1.1781 | WavEnLH_s-4 | 5.1331 | Gr_Skewness | 2.1927 |
| 5 | WavEnLL_s-5 | 1.0984 | WavEnLH_s-3 | 3.0562 | Horzl_RLNU | 2.1008 |
| 6 | WavEnLL_s-4 | 1.0715 | WavEnLL_s-1 | 2.6987 | Horzl_GLNU | 2.0388 |
| 7 | Horzl_GLNU | 1.0465 | WavEnLL_s-5 | 2.3642 | 45dgr_RLNU | 1.1473 |
| 8 | 45dgr_GLNU | 1.0410 | WavEnLH_s-5 | 2.0884 | 45dgr_GLNU | 1.1190 |
| 9 | 135dr_GLNU | 1.0376 | SE_S(0,5) | 1.5735 | 135dr_GLNU | 1.1096 |
| 10 | Vertl_GLNU | 1.0371 | SA_S(2,2) | 1.4091 | Vertl_GLNU | 1.1036 |
Summary of 10 best probability of classification error and average correlation coefficient (POE+ACC) features with lowest values
| Feature rank | Normalisation | |||||
|---|---|---|---|---|---|---|
| Default | 3sigma | 1-99% | ||||
| Feature | POE+ACC coefficient | Feature | POE+ACC coefficient | Feature | POE+ACC coefficient | |
| 1 | WavEnLH_s-4 | 0.4380 | WavEnLH_s-4 | 0.4124 | WavEnLH_s-4 | 0.3759 |
| 2 | Horz_LRE | 0.4387 | SA_S(0,5) | 0.4377 | Vertl_Fraction | 0.4820 |
| 3 | WavEnLH_s-5 | 0.4737 | WavEnLH_s-3 | 0.4868 | Horzl_GLNU | 0.4918 |
| 4 | 45dgr_GLNU | 0.4745 | WavEnHH_s-4 | 0.4913 | WavEnLH_s-3 | 0.4967 |
| 5 | WavEnLL_s-4 | 0.4831 | WavEnLL_s-3 | 0.5013 | WavEnLH_s-5 | 0.5099 |
| 6 | WavEnLH_s-3 | 0.4845 | Teta4 | 0.5158 | SOS_S(4,-4) | 0.5169 |
| 7 | WavEnLH_s-2 | 0.5142 | Horzl_GLNU | 0.5210 | WavEnHH_s-5 | 0.5266 |
| 8 | WavEnHH_s-4 | 0.5166 | Variance | 0.5220 | Perc.90% | 0.5280 |
| 9 | Correlat_S(0, 5) | 0.5176 | WavEnLH_s-5 | 0.5372 | Teta3 | 0.5414 |
| 10 | Skewness | 0.5325 | Gr_Kurtosis | 0.5373 | WavEnLL_s-5 | 0.5514 |
Summary of performance for Fisher feature reduction method in three normalisation schemes
| Normalisation scheme | SEN (%) | SPC (%) | ACC (%) | PPV (%) | NPV (%) | Az value | Correct classification |
|---|---|---|---|---|---|---|---|
| Default | 89.78 | 87.59 | 88.69 | 87.88 | 89.55 | 0.908 (0.872, 0.944) | 243/274 (88.68%) |
| 3sigma | 93.43 | 91.97 | 92.70 | 92.75 | 93.33 | 0.943 (0.917, 0.970) | 254/274 (92.70%) |
| 1-99% | 89.78 | 91.24 | 90.51 | 91.11 | 89.93 | 0.925 (0.893, 0.956) | 248/274 (90.51%) |
SEN – sensitivity, SPC – specificity, ACC – accuracy, PPV – positive predictive value, NPV – negative predictive value, Az – area under ROC curve
Numbers in parentheses are 95% confidence intervals
Summary of performance for probability of classification error and average correlation coefficient (POE+ACC) feature reduction method in three normalisation schemes
| Normalisation scheme | SEN (%) | SPC (%) | ACC (%) | PPV (%) | NPV (%) | Az value | Correct classification |
|---|---|---|---|---|---|---|---|
| Default | 90.51 | 90.51 | 90.51 | 90.51 | 90.51 | 0.927 (0897, 0.958) | 248/274 (90.51%) |
| 3sigma | 91.97 | 91.24 | 91.60 | 91.30 | 91.91 | 0.934 (0.906, 0.963) | 251/274 (91.60%) |
| 1-99% | 95.62 | 93.43 | 94.52 | 93.57 | 95.52 | 0.963 (0.943, 0.982) | 259/274 (94.52%) |
SEN – sensitivity, SPC – specificity, ACC – accuracy, PPV – positive predictive value, NPV – negative predictive value, Az – area under ROC curve
Numbers in parentheses are 95% confidence intervals
Summary of performance for fusion Fisher and probability of classification error and average correlation coefficient (POE+ACC) feature reduction method in three normalisation schemes
| Normalization scheme | SEN (%) | SPC (%) | ACC (%) | PPV (%) | NPV (%) | Az value | Correct classification |
|---|---|---|---|---|---|---|---|
| Default | 92.70 | 92.70 | 92.70 | 92.70 | 92.70 | 0.945 (0.917, 0.972) | 254/274 (92.70%) |
| 3sigma | 99.27 | 98.54 | 98.90 | 98.55 | 99.26 | 0.996 (0.990, 1.000) | 271/274 (98.90%) |
| 1-99% | 96.35 | 97.08 | 96.71 | 97.06 | 96.38 | 0.979 (0.965, 0.994) | 265/274 (96.71%) |
SEN – sensitivity, SPC – specificity, ACC – accuracy, PPV – positive predictive value, NPV – negative predictive value, Az – area under ROC curve
Numbers in parentheses are 95% confidence intervals
Figure 4The diagrams of the ROC curves for texture analysis method in Fisher (A), POE+ACC (B), and FFPA feature reduction method (C)
Figure 5Sample distributions after texture analysis with FFPA features. A) default, (B) 3sigma, and (C) 1-99% normalisation. MDF – most discriminating features; “1” and “2” represent tumour-free and metastatic lymph nodes, respectively