| Literature DB >> 35885427 |
Olga Yu Fedorenko1, Diana Z Paderina1, Elena G Kornetova1,2, Evgeniya G Poltavskaya1, Ivan V Pozhidaev1, Anastasiia A Goncharova1, Maxim B Freidin3,4, Anna V Bocharova3, Nikolay A Bokhan1,2, Anton J M Loonen5, Svetlana A Ivanova1,2.
Abstract
BACKGROUND: Tardive dyskinesia (TD) is an extrapyramidal side effect of the long-term use of antipsychotics. In the present study, the role of glutamatergic system genes in the pathogenesis of total TD, as well as two phenotypic forms, orofacial TD and limb-truncal TD, was studied.Entities:
Keywords: antipsychotics; genes; glutamatergic system; microglia; pharmacogenetics; schizophrenia; tardive dyskinesia
Year: 2022 PMID: 35885427 PMCID: PMC9322868 DOI: 10.3390/diagnostics12071521
Source DB: PubMed Journal: Diagnostics (Basel) ISSN: 2075-4418
The basic information of analyzed polymorphic variants.
| Gene | SNP | Chromosome: Location | Location Region | Alleles | MAF | χ2 | |
|---|---|---|---|---|---|---|---|
|
| rs11644461 | 16:10027033 | intron variant | T/C | 0.23 (C) | 0.686 | 0.408 |
| rs11646587 | 16:9779462 | intron variant | G/A | 0.29 (A) | 0.373 | 0.541 | |
| rs11866328 | 16:9768699 | intron variant | G/T | 0.31 (T) | 0 | 1 | |
| rs1345423 | 16:10154207 | intron variant | G/A/C/T | 0.32 (G) | 0.241 | 0.624 | |
| rs4782039 | 16:9913110 | intron variant | T/C | 0.22 (C) | 0.659 | 0.417 | |
| rs7190619 | 16:9985267 | intron variant | G/A | 0.07 (A) | 0.665 | 0.415 | |
| rs7192557 | 16:10029612 | intron variant | G/A/C/T | 0.32 (A) | 0.280 | 0.597 | |
| rs7196095 | 16:9791975 | intron variant | T/C/G | 0.30 (C) | 0.110 | 0.740 | |
| rs7206256 | 16:10103066 | intron variant | A/G/T | 0.44 (G) | 0.417 | 0.518 | |
| rs8057394 | 16:10021631 | intron variant | C/G | 0.43 (C) | 0.354 | 0.552 | |
| rs9788936 | 16:10011603 | intron variant | T/C | 0.24 (C) | 0.014 | 0.906 | |
| rs9989388 | 16:9872282 | intron variant | C/T | 0.19 (T) | 0.255 | 0.614 | |
|
| rs10772715 | 12:13885069 | intron variant | G/A | 0.43 (A) | 0.006 | 0.938 |
| rs10845838 | 12:13741462 | intron variant | G/A | 0.38 (A) | 0.482 | 0.487 | |
| rs12300851 | 12:13815471 | intron variant | T/A/C | 0.10 (C) | 0.066 | 0.798 | |
| rs12827536 | 12:13943223 | intron variant | C/T | 0.22 (T) | 0.912 | 0.340 | |
| rs1805481 | 12:13610521 | intron variant | A/C | 0.43 (C) | 0.832 | 0.362 | |
| rs2192970 | 12:13683379 | intron variant | G/A | 0.11 (A) | 0.195 | 0.659 | |
| rs220599 | 12:13822364 | intron variant | G/A | 0.44 (A) | 2.664 | 0.103 | |
| rs2300242 | 12:13687363 | intron variant | A/T | 0.48 (T) | 0.604 | 0.437 | |
| rs7313149 | 12:13675353 | intron variant | T/A/C/G | 0.21 (C) | 1.875 | 0.171 | |
| rs890 | 12:13562374 | 3 prime UTR variant | A/C/G | 0.28 (C) | 0.600 | 0.438 | |
|
| rs1954787 | 11:120792654 | intron variant | T/C | 0.50 (T) | 0.052 | 0.819 |
|
| rs1042113 | 11:35286822 | synonymous variant | T/C | 0.23 (C) | 0.081 | 0.777 |
| rs10742338 | 11:35255541 | 3 prime UTR variant | T/A/C | 0.10 (T) | 4.312 |
| |
| rs10768121 | 11:35258109 | 3 prime UTR variant | A/C/G | 0.35 (C) | 1.411 | 0.235 | |
| rs11033046 | 11:35253386 | 3 prime UTR variant | T/A | 0.36 (A) | 0.763 | 0.382 | |
| rs12294045 | 11:35257754 | 3 prime UTR variant | C/G/T | 0.20 (T) | 0.015 | 0.904 | |
| rs12361171 | 11:35256786 | 3 prime UTR variant | T/A/C | 0.36 (A) | 2.575 | 0.109 | |
| rs3088168 | 11:35251721 | 3 prime UTR variant | T/C | 0.36 (C) | 0.778 | 0.378 | |
| rs3812778 | 11:35255723 | 3 prime UTR variant | G/A | 0.10 (A) | 2.547 | 0.110 | |
| rs3829280 | 11:35255176 | 3 prime UTR variant | A/C/T | 0.13 (T) | 2.916 | 0.088 | |
| rs7936950 | 11:35257412 | 3 prime UTR variant | C/A/G/T | 0.10 (C) | 3.488 | 0.062 | |
|
| rs2229894 | 5:36686302 | 3 prime UTR variant | G/A/C | 0.43 | 0.552 | 0.457 |
|
| rs62126236 | 19:49441696 | intron variant | T/C | 0.19 (C) | 0.458 | 0.499 |
|
| rs1468412 | 7:86804135 | intron variant | A/T | 0.38 (T) | 0 | 1 |
| rs2237562 | 7:86792916 | intron variant | T/C | 0.39 (C) | 0.587 | 0.444 | |
| rs2299225 | 7:86818264 | intron variant | T/G | 0.03 (G) | 1.247 | 0.264 | |
| rs6465084 | 7:86774159 | intron variant | A/G | 0.23 (G) | 4.100 |
| |
|
| rs12491620 | 3:7352646 | intron variant | C/G | 0.18 (G) | 3.215 | 0.073 |
| rs1396409 | 3:7261220 | intron variant | G/A/C/T | 0.34 (A) | 0.096 | 0.757 | |
| rs1450099 | 3:7496689 | intron variant | T/G | 0.38 (T) | 0.099 | 0.752 | |
| rs17031835 | 3:6880071 | intron variant | C/T | 0.10 (T) | 0.039 | 0.844 | |
| rs3749380 | 3:6861610 | missense variant | C/G/T | 0.42 (T) | 0.299 | 0.585 | |
|
| rs2237748 | 7:126638809 | intron variant | C/T | 0.32 (T) | 0 | 1 |
| rs2299472 | 7:126580415 | intron variant | C/A/G | 0.32 (A) | 0.062 | 0.803 |
Notes: MAF—minor allele frequency; HWE χ2 and HWE p—chi-square and p-value statistics, respectively, to test the frequency distribution according to the Hardy–Weinberg equilibrium. * and in bold: significant at p < 0.05.
Demographic and clinical parameters of the total group of patients with schizophrenia depending on the presence or absence of tardive dyskinesia.
| Patients without TD | Patients with TD | ||
|---|---|---|---|
| Total sample size | 715 | 229 | - |
| Gender, n (%) | Male—375 (52.45%) | Male—134 (58.51%) | 0.109 |
| Female—340 (47.55%) | Female—95 (41.49%) | ||
| Age, years | 37 (30; 48) | 45 (34.75; 56.25) | <0.001 |
| Age of onset, years | 24 (20; 29) | 24 (19; 31.25) | 0.558 |
| Duration of illness, years | 11.5 (5; 20) | 18 (8.75; 27.25) | <0.001 |
| CPZeq, dose Me (Q1; Q3) | 450 (225; 750) | 500 (300; 758.7) | 0.187 |
Notes: Me (Q1; Q3)—median and quartiles (first and third); TD—tardive dyskinesia; CPZeq—chlorpromazine equivalent (according to [46]).
Demographic and clinical parameters of the representative group of patients genotyped.
| Patients without TD | Patients with TD | ||
|---|---|---|---|
| Total sample size | 546 | 158 | - |
| Orofacial TD—86 | |||
| Gender, n (%) | Male—282 (51.65%) | Male—88 (55.70%) | 0.109 |
| Female—264 (48.35%) | Female—70 (44.30%) | ||
| Age, years | 38 (31; 48) | 45 (34; 57) | <0.001 |
| Age of onset, years | 24 (20; 30) | 24 (19.5; 31.5) | 0.558 |
| Duration of illness, years | 12 (6; 21) | 18 (9; 27) | <0.001 |
| CPZeq, dose Me (Q1; Q3) | 430 (225; 779.95) | 500 (300; 758.7) | 0.294 |
Notes: Me (Q1; Q3)—median and quartiles (first and third); TD—tardive dyskinesia; CPZeq—chlorpromazine equivalent (calculated according to [46]).
Results of regression analysis of association between genetic markers and tardive dyskinesia.
| Gene | SNP | Estimate | Standard Error | |
|---|---|---|---|---|
|
| rs2237562 | 0.3884 | 0.1400 | 0.0055 |
|
| rs1468412 | 0.3311 | 0.1400 | 0.0180 |
|
| rs1042113 | 0.3846 | 0.1434 | 0.0073 |
|
| rs10768121 | −0.2963 | 0.1352 | 0.0284 |
|
| rs12361171 | −0.2963 | 0.1358 | 0.0291 |
|
| rs2229894 | −0.3327 | 0.1401 | 0.0175 |
Notes: Additive genetic model was tested using logistic regression adjusting for age and sex. Only nominally significant associations are shown.
Results of regression analysis of association between haplotypes of SLC1A2 gene (SNPs rs1042113, rs10768121, and rs12361171) and tardive dyskinesia.
| Haplotype | Frequency | OR | 95% CI | |
|---|---|---|---|---|
| TCA | 0.3805 | 1.00 (Ref.) | ||
| CAT | 0.2731 | 1.57 | 1.15–2.14 | 0.0048 |
| TAT | 0.3311 | 1.16 | 0.84–1.60 | 0.3570 |
| Rare | 0.0152 | 0.74 | 0.21–2.54 | 0.6296 |
Notes: Adjustments were made for age and sex; rare haplotypes with frequency < 0.01 are combined.