Literature DB >> 35881796

Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism.

Riccardo Fusi1,2, Serena Rosignoli3, Haoyu Lou1,4,5, Giuseppe Sangiorgi3, Riccardo Bovina3, Jacob K Pattem6,7, Aditi N Borkar8,9, Marco Lombardi1,10, Cristian Forestan3, Sara G Milner3, Jayne L Davis1, Aneesh Lale1,2, Gwendolyn K Kirschner11, Ranjan Swarup1, Alberto Tassinari3, Bipin K Pandey1,2, Larry M York1,12, Brian S Atkinson1, Craig J Sturrock1, Sacha J Mooney1, Frank Hochholdinger11, Matthew R Tucker4,5, Axel Himmelbach13, Nils Stein13,14, Martin Mascher13,15, Kerstin A Nagel16, Laura De Gara10, James Simmonds17, Cristobal Uauy17, Roberto Tuberosa3, Jonathan P Lynch1,18, Gleb E Yakubov6, Malcolm J Bennett1,2, Rahul Bhosale1,2, Silvio Salvi3.   

Abstract

Root angle in crops represents a key trait for efficient capture of soil resources. Root angle is determined by competing gravitropic versus antigravitropic offset (AGO) mechanisms. Here we report a root angle regulatory gene termed ENHANCED GRAVITROPISM1 (EGT1) that encodes a putative AGO component, whose loss-of-function enhances root gravitropism. Mutations in barley and wheat EGT1 genes confer a striking root phenotype, where every root class adopts a steeper growth angle. EGT1 encodes an F-box and Tubby domain-containing protein that is highly conserved across plant species. Haplotype analysis found that natural allelic variation at the barley EGT1 locus impacts root angle. Gravitropic assays indicated that Hvegt1 roots bend more rapidly than wild-type. Transcript profiling revealed Hvegt1 roots deregulate reactive oxygen species (ROS) homeostasis and cell wall-loosening enzymes and cofactors. ROS imaging shows that Hvegt1 root basal meristem and elongation zone tissues have reduced levels. Atomic force microscopy measurements detected elongating Hvegt1 root cortical cell walls are significantly less stiff than wild-type. In situ analysis identified HvEGT1 is expressed in elongating cortical and stele tissues, which are distinct from known root gravitropic perception and response tissues in the columella and epidermis, respectively. We propose that EGT1 controls root angle by regulating cell wall stiffness in elongating root cortical tissue, counteracting the gravitropic machinery's known ability to bend the root via its outermost tissues. We conclude that root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism.

Entities:  

Keywords:  antigravitropic; barley; cell-wall; root angle; wheat

Mesh:

Substances:

Year:  2022        PMID: 35881796      PMCID: PMC9351459          DOI: 10.1073/pnas.2201350119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  57 in total

1.  A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.

Authors:  Pablo Cingolani; Adrian Platts; Le Lily Wang; Melissa Coon; Tung Nguyen; Luan Wang; Susan J Land; Xiangyi Lu; Douglas M Ruden
Journal:  Fly (Austin)       Date:  2012 Apr-Jun       Impact factor: 2.160

2.  pegas: an R package for population genetics with an integrated-modular approach.

Authors:  Emmanuel Paradis
Journal:  Bioinformatics       Date:  2010-01-14       Impact factor: 6.937

3.  TILLMore, a resource for the discovery of chemically induced mutants in barley.

Authors:  Valentina Talamè; Riccardo Bovina; Maria Corinna Sanguineti; Roberto Tuberosa; Udda Lundqvist; Silvio Salvi
Journal:  Plant Biotechnol J       Date:  2008-04-15       Impact factor: 9.803

4.  Identification of novel transcripts in annotated genomes using RNA-Seq.

Authors:  Adam Roberts; Harold Pimentel; Cole Trapnell; Lior Pachter
Journal:  Bioinformatics       Date:  2011-06-21       Impact factor: 6.937

5.  VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.

Authors:  Shengyang Wu; Yurong Xie; Junjie Zhang; Yulong Ren; Xin Zhang; Jiulin Wang; Xiuping Guo; Fuqing Wu; Peike Sheng; Juan Wang; Chuanyin Wu; Haiyang Wang; Shanjin Huang; Jianmin Wan
Journal:  Plant Cell       Date:  2015-10-20       Impact factor: 11.277

6.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

7.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

8.  The developmental and environmental regulation of gravitropic setpoint angle in Arabidopsis and bean.

Authors:  Suruchi Roychoudhry; Martin Kieffer; Marta Del Bianco; Che-Yang Liao; Dolf Weijers; Stefan Kepinski
Journal:  Sci Rep       Date:  2017-03-03       Impact factor: 4.379

9.  ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF-containing protein that controls root growth angle in barley and wheat.

Authors:  Gwendolyn K Kirschner; Serena Rosignoli; Li Guo; Isaia Vardanega; Jafargholi Imani; Janine Altmüller; Sara G Milner; Raffaella Balzano; Kerstin A Nagel; Daniel Pflugfelder; Cristian Forestan; Riccardo Bovina; Robert Koller; Tyll G Stöcker; Martin Mascher; James Simmonds; Cristobal Uauy; Heiko Schoof; Roberto Tuberosa; Silvio Salvi; Frank Hochholdinger
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-31       Impact factor: 11.205

10.  Tubby-like Protein 2 regulates homogalacturonan biosynthesis in Arabidopsis seed coat mucilage.

Authors:  Meng Wang; Zongchang Xu; Rana Imtiaz Ahmed; Yiping Wang; Ruibo Hu; Gongke Zhou; Yingzhen Kong
Journal:  Plant Mol Biol       Date:  2019-02-01       Impact factor: 4.076

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