Literature DB >> 35881336

Preservation and Extraction of Malaria Parasite DNA from Dried Blood Spots.

Helle Hansson1,2, Queen Saidi3,4,5, Michael Alifrangis3,4.   

Abstract

Molecular studies related to diagnosis and research rely on collection of blood samples and extraction of high-quality DNA. In Africa, where the populations carried 94% of the total burden of cases and deaths due to malaria in 2019, collection of samples is often challenged by remote study areas and lack of a cold chain to transport and store samples. Collection of blood on filter paper is a technique that is less invasive and has simpler requirements regarding training of staff, storage, and transport of samples than collection of venous blood samples. Dried blood spots (DBS) are therefore commonly used in many research projects. However, DNA quality can be affected by duration and conditions of storage. The quality of the DNA for molecular analyses also depends on a DNA extraction methodology that provides high-quality DNA with high purity and yield. Several protocols for DNA extraction have been described, and many comparative studies have analyzed and optimized the different methodologies to find an alternative to the more costly commercial extraction kits. This chapter describes recommendations for storage and preservation of DBS, and a Chelex-based protocol for extraction of DNA from DBS.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Chelex-100; DNA extraction; Dried blood spots; Filter paper; Malaria; Plasmodium

Mesh:

Substances:

Year:  2022        PMID: 35881336     DOI: 10.1007/978-1-0716-2189-9_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  26 in total

1.  Rapid, efficient method for multiplex amplification from filter paper.

Authors:  M Caggana; J M Conroy; K A Pass
Journal:  Hum Mutat       Date:  1998       Impact factor: 4.878

2.  High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction.

Authors:  G Snounou; S Viriyakosol; X P Zhu; W Jarra; L Pinheiro; V E do Rosario; S Thaithong; K N Brown
Journal:  Mol Biochem Parasitol       Date:  1993-10       Impact factor: 1.759

3.  Determination of genetic variation within Plasmodium falciparum by using enzymatically amplified DNA from filter paper disks impregnated with whole blood.

Authors:  K C Kain; D E Lanar
Journal:  J Clin Microbiol       Date:  1991-06       Impact factor: 5.948

4.  Whole-genome amplified DNA from stored dried blood spots is reliable in high resolution melting curve and sequencing analysis.

Authors:  Bo G Winkel; Mads V Hollegaard; Morten S Olesen; Jesper H Svendsen; Stig Haunsø; David M Hougaard; Jacob Tfelt-Hansen
Journal:  BMC Med Genet       Date:  2011-02-09       Impact factor: 2.103

5.  Ultra-sensitive detection of Plasmodium falciparum by amplification of multi-copy subtelomeric targets.

Authors:  Natalie Hofmann; Felista Mwingira; Seif Shekalaghe; Leanne J Robinson; Ivo Mueller; Ingrid Felger
Journal:  PLoS Med       Date:  2015-03-03       Impact factor: 11.069

6.  Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification.

Authors:  Samuel O Oyola; Cristina V Ariani; William L Hamilton; Mihir Kekre; Lucas N Amenga-Etego; Anita Ghansah; Gavin G Rutledge; Seth Redmond; Magnus Manske; Dushyanth Jyothi; Chris G Jacob; Thomas D Otto; Kirk Rockett; Chris I Newbold; Matthew Berriman; Dominic P Kwiatkowski
Journal:  Malar J       Date:  2016-12-20       Impact factor: 2.979

7.  High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology.

Authors:  Sidsel Nag; Marlene D Dalgaard; Poul-Erik Kofoed; Johan Ursing; Marina Crespo; Lee O'Brien Andersen; Frank Møller Aarestrup; Ole Lund; Michael Alifrangis
Journal:  Sci Rep       Date:  2017-05-25       Impact factor: 4.379

Review 8.  Dried Blood Spots for Global Health Diagnostics and Surveillance: Opportunities and Challenges.

Authors:  Mark D Lim
Journal:  Am J Trop Med Hyg       Date:  2018-06-28       Impact factor: 2.345

9.  FOETAL for NCD-FOetal Exposure and Epidemiological Transitions: the role of Anaemia in early Life for Non-Communicable Diseases in later life: a prospective preconception study in rural Tanzania.

Authors:  Line Hjort; Sofie Lykke Møller; Daniel Minja; Omari Msemo; Birgitte Bruun Nielsen; Dirk Lund Christensen; Thor Theander; Karsten Nielsen; Lise Grupe Larsen; Louise Groth Grunnet; Leif Groop; Rashmi Prasad; John Lusingu; Christentze Schmiegelow; Ib C Bygbjerg
Journal:  BMJ Open       Date:  2019-05-22       Impact factor: 2.692

10.  Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots.

Authors:  Sidsel Nag; Poul-Erik Kofoed; Johan Ursing; Camilla Koldbæk Lemvigh; Rosa Lundbye Allesøe; Amabelia Rodrigues; Christina Aaby Svendsen; Jacob Dyring Jensen; Michael Alifrangis; Ole Lund; Frank M Aarestrup
Journal:  Malar J       Date:  2018-02-23       Impact factor: 2.979

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