Qi Wang1, Jie Liu1, Zi-Dan Zhou1, Ke-Xin Zhou1, Fei Li1, Qi-Wen Zhang1, Shou-Kai Wang1, Wei Wang1, Zhen Jin1,2, You-Zhi Tang1,2. 1. Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China. 2. Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China.
Abstract
A series of pleuromutilin derivatives containing alkylamine and nitrogen heterocycle groups were designed and synthesised under mild conditions. The in vitro antibacterial activity of these semisynthetic derivatives against four strains of Staphylococcus aureus (MRSA ATCC 43300, S.aureus ATCC 29213, S.aureus AD3, and S.aureus 144) were evaluated by the broth dilution method. Compound 13 was found to have excellent antibacterial activity against MRSA (MIC = 0.0625 μg/mL). Furthermore, compound 13 was further studied by the time-killing kinetics and the post-antibiotic effect approach. In the mouse thigh infection model, compound 13 exhibited superior antibacterial efficacy than that of tiamulin. Meanwhile, compound 13 showed a lower inhibitory effect than that of tiamulin on RAW264.7 and 16HBE cells at the concentration of 10 μg/mL. Molecular docking study revealed that compound 13 can effectively bind to the active site of the 50S ribosome (the binding free energy = -9.66 kcal/mol).
A series of pleuromutilin derivatives containing alkylamine and nitrogen heterocycle groups were designed and synthesised under mild conditions. The in vitro antibacterial activity of these semisynthetic derivatives against four strains of Staphylococcus aureus (MRSA ATCC 43300, S.aureus ATCC 29213, S.aureus AD3, and S.aureus 144) were evaluated by the broth dilution method. Compound 13 was found to have excellent antibacterial activity against MRSA (MIC = 0.0625 μg/mL). Furthermore, compound 13 was further studied by the time-killing kinetics and the post-antibiotic effect approach. In the mouse thigh infection model, compound 13 exhibited superior antibacterial efficacy than that of tiamulin. Meanwhile, compound 13 showed a lower inhibitory effect than that of tiamulin on RAW264.7 and 16HBE cells at the concentration of 10 μg/mL. Molecular docking study revealed that compound 13 can effectively bind to the active site of the 50S ribosome (the binding free energy = -9.66 kcal/mol).
The abuse of antibiotics contributes to the emergence of multiple drug-resistant bacteria, including Methicillin-resistant Staphylococcus aureus (MRSA). MRSA can cause a wide variety of clinical diseases, such as skin and soft tissue infections (SSTIs), sepsis, pneumonia, meningitis, infective endocarditis and bacteraemia,. The prevalence of MRSA infection had become a major public health concern worldwide. Vancomycin is “the last line of defense” against Methicillin-resistant Staphylococcus aureus infections. But it has recently been reported that the horizontal transfer of the vanA gene from vancomycin-resistant E. faecalis to MRSA, leading the resistance of MRSA to vancomycin. With the prevalence of MRSA, new antimicrobial agents with novel modes of action are urgently needed.Pleuromutilin (1, Figure 1) is a tricyclic diterpene natural product, which was first discovered and isolated from two basidiomycetes, Pleurotus mutilus and P. passeckerianus in 1951. Pleuromutilin exhibited antibacterial activity towards part of Gram-negative bacteria and most of Gram-positive bacteria, such as Staphylococcus aureus. Pleuromutilin exerts antibacterial activity by binding to the V domain of the peptidyl transferase centre (PTC) of the 50S subunit of the bacterial ribosome. Thus, pleuromutilin has aroused considerable research for this unique antibacterial mechanism. The structural optimizations of pleuromutilin on the C-14 side chain prompted the discovery of tiamulin (2, Figure 1) and valnemulin (3, Figure 1) which were authorised as veterinary medicines in 1979 and 1999, respectively. Retapamulin (4, Figure 1) became the first pleuromutilin approved for human use by U.S Food and Drug Administration (FDA) in 200711. Lefamulin (5, Figure 1) is the first approved systemic pleuromutilin antibiotic for the treatment of community-acquired bacterial pneumonia (CABP).
Structure of pleuromutilin (), tiamulin (), valnemulin (), retapamulin (), lefamulin ().Previous work in our group has led to a variety of semisynthetic pleuromutilin derivatives. These derivatives contain 2-aminophenylthiol, piperazine ring, piperidine ring and 1,2,3-triazole as linkers on the C14 side chain of pleuromutilin. The bioassay results confirmed that pleuromutilin derivatives using 2-aminobenzenethiol as the linking chain exhibited good antibacterial activity against MRSA. A survey reported that 59% of small-molecule drugs contain nitrogen heterocycles among U.S. FDA approved drugs on the market. These backgrounds inspired us to develop novel pleuromutilin derivatives containing nitrogen heterocycles with 2-aminobenzenethiol as the linking arm. Additionally, in order to enrich the diversity of introduced groups, we also introduced alkylamines on the C14 side chain.In this study, we designed and synthesised 21 pleuromutilin derivatives with nitrogen heterocycles and alkylamines under mild conditions and evaluated their antibacterial activity against MRSA in vitro and in vivo. To investigate the possible binding mode of these compounds with 50S ribosomes, the molecular docking experiment was also performed.
Results and discussion
Chemistry
The synthetic course of all pleuromutilin derivatives was depicted in Scheme 1. Compound 6 was synthesised by the reaction of pleuromutilin with p-toluenesulfonyl chloride in the presence of acetonitrile and inorganic base (sodium or potassium hydroxide). Compound 7 was prepared through the reaction of compound 6 with iodine by a nucleophilic substitution reaction. Compound 8 and the acyl chloride group of chloracetyl chloride were converted into 22–(2-(2-chloroacetamido)phenyl)thioacetyl-l-yl-22-deoxy pleuromutilin (compound 9) through condensation reaction. The target = compounds containing alkylamine (compounds 10–14) and nitrogen heterocycle (compounds 15–30) were synthesised by secondary amine intermediate and compound 9 under alkaline condition. All compounds are > 95% pure by HPLC analysis.
Scheme 1.
Reagent and conditions: (i) dichloromethane, 4-tosyl chloride, NaOH, rt, 3 h (ii) ethyl acetate, 2-aminobenzenethiol, NaOH, 70 °C, 3 h; (iii) acetonitrile, chloroacetyl chloride, triethylamine, rt, 4 h; (iv) acetonitrile, secondary amine, K2CO3, 78 °C, 12 h.
Reagent and conditions: (i) dichloromethane, 4-tosyl chloride, NaOH, rt, 3 h (ii) ethyl acetate, 2-aminobenzenethiol, NaOH, 70 °C, 3 h; (iii) acetonitrile, chloroacetyl chloride, triethylamine, rt, 4 h; (iv) acetonitrile, secondary amine, K2CO3, 78 °C, 12 h.
In vitro antibacterial activity
The in vitro antibacterial activity of these pleuromutilin derivatives was evaluated against MRSA (ATCC 43300), S. aureus (ATCC 29213), S. aureus (AD3), S. aureus (144) in accordance with the Clinical and Laboratory Standards Institute (CLSI). The MICs and MBCs of the 21 new pleuromutilin derivatives were determined by the broth micro dilution method. Tiamulin (2, Figure 1), valnemulin (3, Figure 1), retapamulin (4, Figure 1) and vancomycin were used as the reference antibacterial drugs. Results of MICs and MBCs were displayed in Table 1.
Table 1.
MIC and MBC (μg/mL) values of compounds 10–30, tiamulin, valnemulin, vancomycin, and retapamulin against MRSA (ATCC 43300), S. aureus (ATCC 29213), S. aureus (AD3) and S. aureus (144).
Compound No
R
MIC/MBC(μg/mL)
MRSAATCC43300
S.aureusATCC 29213
S.aureusAD3
S.aureus144
10
0.0625/0.125
0.0625/0.25
0.0625/0.5
0.0625/0.25
11
0.25/0.25
0.25/1
0.5/2
0.5/2
12
0.125/0.25
0.125/0.25
0.125/2
0.25/0.5
13
0.0625/0.125
0.0625/0.25
0.0625/0.5
0.125/0.5
14
0.125/0.25
0.125/0.25
0.125/2
0.25/0.5
15
0.25/0.5
0.25/0.5
0.25/2
0.25/0.5
16
>16/>32
>16/>32
>16/>32
>16/>32
17
0.125/>16
0.125/>16
0.125/>16
0.125/>16
18
0.0625/0.125
0.0625/0.25
0.0625/0.5
0.125/0.5
19
0.125/0.5
0.125/0.5
0.25/1
0.25/0. 5
20
0.125/0.25
0.0625/0.25
0.125/0.5
0.125/0.5
21
>16/>32
>16/>32
>16/>32
>16/>32
22
0.125/0.25
0.125/0.5
0.125/1
0.25/0.5
23
0.25/0.25
0.25/0.25
0.25/2
0.25/0.5
24
0.25/0.5
0.25/0.5
0.5/4
0.5/1
25
0.25/0.5
0.5/1
0.5/2
0.5/1
26
0.25/0.25
0.25/1
0.25/2
0.5/0.5
27
0.125/0.25
0.125/0.25
0.25/2
0.25/1
28
0.125/1
0.5/2
0.5/4
1/4
29
0.125/0.125
0.125/1
0.125/2
0.125/1
30
>16/>32
>16/>32
>16/>32
>16/>32
Tiamulin
0.25/0.5
0.5/1
0.5/2
0.5/2
Valnemulin
0.0625/0.25
0.0625/0.0625
0.0625/0.25
0.0625/0.125
Retapamulin
0.0625/0.125
0.0625/0.125
0.0625/0.25
0.125/0.25
Vancomycin
1/1
1/2
1/1
1/2
MIC and MBC (μg/mL) values of compounds 10–30, tiamulin, valnemulin, vancomycin, and retapamulin against MRSA (ATCC 43300), S. aureus (ATCC 29213), S. aureus (AD3) and S. aureus (144).As presented in Table 1, the MIC values of most of synthesised compounds against MRSA (ATCC 43300), S. aureus (ATCC 29213), S. aureus (AD3) and S. aureus (144) ranged from 0.25 to 0.0625 μg/mL, 0.5 to 0.0625 μg/mL, 0.5 to 0.0625 and 1 to 0.125 μg/mL, respectively. The results showed that most of the tested compounds displayed stronger antibacterial activity than tiamulin against those four Gram-positive bacteria.Compound 10 (MIC = 0.0625 μg/mL) exhibited superior antibacterial activity against MRSA than compound 11 (MIC = 0. 25 μg/mL). Therefore, we hypothesised that the longer side chain of the introduced secondary amine might yield the poorer antibacterial activity, which was consistent with previously reported. When the terminal methyl group in compound 11 was replaced by hydroxyl, compound 13 (MIC = 0.0625 μg/mL) was obtained. We hypothesised that the strong binding ability between hydroxyl and the residue of 50S ribosomes might be the reason for the superior activity of compound 13. When the hydrogen atom on the C2 position of the pyrrole ring was substituted by nitrile and aldehyde group, compounds 17 and 18 were obtained. The MIC values of compound 17 and 18 against MRSA were 0.125 and 0.0625 μg/mL. The results showed that the compound containing stronger electron-withdrawing ability group relatively displayed better antibacterial activity. In order to compare the difference of compounds containing different nitrogen heterocycles, compounds 18 and 25 were prepared. As shown in Table 1, compound 18 displayed superior antibacterial activity than compound 25. The results indicated that the superior antibacterial activity of compound 18 containing pyrrole ring might be related to the strong electron-rich ability, which was consistent with previously reported. Compounds 19, 20 and 28 exhibited superior antibacterial activity. This result indicated that these compounds containing the piperidinyl group showed a better antibacterial effect. Compound 22 exhibited superior antibacterial activity against MRSA than compounds 23 and 24. We hypothesised that the introduction of methyl groups at C2 and C5 sites of imidazole increased the steric hindrance of the compounds and might yield poorer antibacterial activity.According to the previous studies, compounds were considered bactericidal when MBC/MIC ratio ≤ 4 and bacteriostatic when MBC/MIC ratio > 4. The MBC/MIC ratios of most pleuromutilin derivatives against MRSA were ≤4. Thus, most of these compounds could be considered as prospective bactericidal agents.Among these derivatives, compounds 10, 13, and 18 exhibited a greater bactericidal effect than other pleuromutilin derivatives. Therefore, the time-kill kinetics experiments of these three compounds were performed. Tiamulin and retapamulin were used as positive controls. The results were shown in Figure 2.
Figure 2.
Time-kill curves for MRSA ATCC 43300 with different concentrations of compounds (a), (b), (c), tiamulin (d), retapamulin (e).
Time-kill curves for MRSA ATCC 43300 with different concentrations of compounds (a), (b), (c), tiamulin (d), retapamulin (e).Compounds 10 and 18 at 4 × MIC induced inhibition of MRSA (-1.22 log10 CFU/mL and −1.17 log10 CFU/mL reduction) after 3 h incubation. Compound 13, tiamulin and retapamulin at 2 × MIC induced killing of MRSA (-1.2 log10 CFU/mL, −0.96 log10 CFU/mL and −1.08 log10 CFU/mL reduction) after 3 h of incubation. 99.9% of MRSA was killed by 4 × MIC of compounds 10 and 18 at 24 h. After exposure for 24 h, compound 13 killed 99.9% of MRSA at 2 × MIC concentration. The results indicated that compounds 10, 13 and 18 against MRSA were time-dependent agents. For time-dependent antibacterial agents, multiple or continuous intravenous administration may achieve better therapeutic effects,.In order to explore the potential of these drugs for continuous inhibition of bacteria and provide rational dosing regimen, we performed the post-antibiotic effect (PAE) tests on compounds 10, 13 and 18. The bacterial growth kinetics curves and the PAE exhaustive results were presented in Figure 3 and Table 2, respectively. According to previous work of our team, the PAE of tiamulin at the concentrations of 2 × MIC and 4 × MIC for 1 h were 1.53 h and 1.90 h; after 2 h exposure, the PAE results for the same concentrations were 1.65 h and 2.04 h, respectively. The results suggested that a similar post-antibacterial effect was observed between compound 10 and tiamulin (P > 0.05). The results also suggested that compound 13 displayed similar post-antibacterial effects to tiamulin (P > 0.05), while compound 18 exhibited a longer PAE than tiamulin. Thus, compound 18 could be administered at longer intervals than tiamulin in clinical use.
Figure 3.
The bacterial growth kinetic curves for MRSA ATCC 43300 exposed to compound (a), compound (c) and compound (e) for 1 h, compound (b), compound (d) and compound (f) for 2 h.
Table 2.
The PAEs values of compounds 10, 13 and 18 against MRSA ATCC 43300.
Compound
Concentration
PAE (h)
Exposure for 1 h
Exposure for 2 h
Compound 10
2 × MIC
1.55
1.63
4 × MIC
1.62
1.73
Compound 13
2 × MIC
1.54
1.76
4 × MIC
1.61
1.90
Compound 18
2 × MIC
1.81
2.58
4 × MIC
1.90
3.00
The bacterial growth kinetic curves for MRSA ATCC 43300 exposed to compound (a), compound (c) and compound (e) for 1 h, compound (b), compound (d) and compound (f) for 2 h.The PAEs values of compounds 10, 13 and 18 against MRSA ATCC 43300.
In vivo antibacterial activity
Since compound 13 showed excellent in vitro antibacterial activity against MRSA, the in vivo antibacterial activity of compound 13 was further investigated by neutropenic murine thigh infection model. Tiamulin and vancomycin were used as positive controls, and physiological saline was used as a negative control. The results were shown in Figure 4.
Figure 4.
Efficacy of tiamulin, vancomycin, compound against MRSA ATCC 43300 in murine neutropenic thigh models: black triangle: growth control; red triangle: tiamulin (20 mg/kg); green circular: vancomycin (20 mg/kg), blue circular: compound (20 mg/kg).
Efficacy of tiamulin, vancomycin, compound against MRSA ATCC 43300 in murine neutropenic thigh models: black triangle: growth control; red triangle: tiamulin (20 mg/kg); green circular: vancomycin (20 mg/kg), blue circular: compound (20 mg/kg).Compared with no-drug control group, the experimental groups reduced the bacterial load in thigh muscle of mice −1.25 log10 CFU/mL (tiamulin), −1.84 log10 CFU/mL (vancomycin), −1.78 log10 CFU/mL (compound 13), respectively. The significant statistically difference between tiamulin and compound 13 were observed (P < 0.001, n = 6/group). Compound 13 exhibited a significant treatment effect against MRSA compared to tiamulin (-0.53 log10 CFU/mL). No statistical difference was observed between the compound 13 and vancomycin in the infection model. The results showed that compound 13 could be used to treat MRSA infection in vivo and was more effective than tiamulin in reducing the MRSA load of thigh infected mice. Compound 13 exhibited a similar level of efficacy to vancomycin in reducing the MRSA load of thigh infected mice.
Cytotoxicity assay
The cytotoxicity of compounds 10, 13, 18 and tiamulin to RAW264.7 and human cell lines 16HBE (non-cancer cell line) cells were evaluated by MTT assay. The results were presented in Figure 5(a,b). At the concentration of 5 μg/mL, compounds 10, 13, 18 had no significant inhibitory effect on RAW264.7 cells. Under the same experimental conditions, we evaluated the cytotoxicity of these compounds and tiamulin at the concentration of 10 μg/mL. RAW264.7 cells treated with compounds 10 and 18 have a statistical difference compared with the control group. However, no statistical difference was observed between control group and compound 13 treated group. At the concentration of 5 μg/mL, compounds 13 and tiamulin had no significant inhibitory effect on 16HBE cells. At the concentration of 10 μg/mL, lower inhibitory effect was observed on compound 13 treated group. The result indicated that compound 13 was less cytotoxic than tiamulin on RAW264.7 cells and 16HBE cells.
Figure 5.
The cytotoxicity assay of compounds , and tiamulin to RAW264.7 (a) and 16HBE (b) cells at the concentration of 5 μg/mL and 10 μg/mL.
The cytotoxicity assay of compounds , and tiamulin to RAW264.7 (a) and 16HBE (b) cells at the concentration of 5 μg/mL and 10 μg/mL.Compound 13 might exhibit better safety profile as compared to that of tiamulin.
Molecular docking study
A molecular docking study was performed to predict the possible binding mode of compound 13 with 50S ribosomes (PDB: 1XBP). Through Ledock software, the redocking of tiamulin into 1XBP placed the ligand in the same conformation as that in the X-ray structure (RMSD = 0.728). The binding free energy of compound 13 with the 50S ribosome was calculated to be −9.66 kcal/mol. The docking results of compound 13 show similar binding mode (Figure 6(a)) to tiamulin. The docking results presented a superimposition mode of 50S ribosomes and compound 13.
Figure 6.
Docking mode of compound 13 to 1XBP (a). Docking mode of tiamulin (yellow) and compound 13 (green) to 1XBP. (b) 3 D representation of docking poses for compound 13 in the 50S ribosome residues. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.).
Docking mode of compound 13 to 1XBP (a). Docking mode of tiamulin (yellow) and compound 13 (green) to 1XBP. (b) 3 D representation of docking poses for compound 13 in the 50S ribosome residues. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.).Three hydrogen bonds played an important role on the binding of compound 13 to 50S ribosome. One hydrogen bond (distance: 2.5 Å) was formed between the ketone on the C3 atom of compound 13 (pleuromutilin core) and the residue of A-2482. One hydrogen bond (distance: 2.0 Å) was constituted by the amide side chain on the compound 13 and the residue of U-2564. The third hydrogen bond was constituted by the hydroxyl side chain on the compound 13 and the residues of C-2420 (distance: 2.2 Å). The superior docking mode of compound 13 demonstrated that it might has a stronger affinity with 50S ribosomes.
Conclusions
In this study, a series of novel pleuromutilin derivatives embracing alkylamine and nitrogen heterocycles were synthesised and evaluated for their in vitro and in vivo antibacterial activity against MRSA. Most of tested compounds exhibited superior antibacterial activities against MRSA and S. aureus than tiamulin. The time-kill curve results suggested that compounds 13 were in a time-dependent manner against MRSA. The PAE study indicated that compound 13 had a similar PAE time against MRSA compared with tiamulin. Compound 13 was more effective than tiamulin in the neutropenic murine thigh infection model, and exhibited a similar treatment effect compared to the vancomycin. Compound 13 formed three strong hydrogen bonds with residues of 50S ribosome. This study indicated that compound 13 could be served as a potential candidate against MRSA infections for further optimisation and discovery.
Experimental
Materials
Pleuromutilin (>90% pure) was purchased from Great Enjoyhood Biochemical Co. Ltd., (Daying, China). The aprotic solvent used in this experiment were purchased from TiTan Technology Co. Ltd., (Shanghai, China). The other analytical grade solvents were purchased from Guangzhou General Reagent Factory (Guangzhou, China). The target compounds were purified by silica gel column chromatography (200–300 mesh, Branch of Qingdao Haiyang Chemical Co. Ltd., Shandong, China). Melting Point Apparatus were purchased from Gongyi Yuhua Instrument Co., Ltd. The optical rotations were measured on an Autopol III automatic polarimeter (Rudolph Research analytical).
Synthesis
General method for the synthesis of novel pleuromutilin derivatives based on compound 1 were illustrated in Scheme 1. Compound 22–(2-(2-chloroacetamido)phenyl)thioacety-l-yl-22-deoxypleuromutilin(compound 9) and a variety of secondary amine were prepared according to the literature. All those pleuromutilin derivatives were purified by silica column chromatography. These synthesised target compounds were characterised by 1H NMR, 13 C NMR and high-resolution mass spectral (HR-MS) analysis. 1H NMR and 13 C NMR spectra were processed with Bruker AV-400 and AV-600 spectrometer in chloroform-d or DMSO-d6 using trimethylsilane as an internal standard. Chemical shift values (δ) were reported in ppm. High-resolution mass spectra were recorded by Thermo Scientific Q Exactive Focus Orbitrap LC-MS/MS with an electrospray ionisation (ESI) source. HPLC was performed using a Waters e2695 liquid chromatography column (Phe-nomenex 4.6 × 250 mm, 5 μm, mobile phase A: 0.1% formic acid in water; mobile phase B: methanol; mobile phase C: acetonitrile). The results confirmed that the chemical structures of pleuromutilin derivatives were consistent with the expected structures.
Compound 6 (1 g, 1.87 mmol) and iodine (0.48 g, 1.87 mmol) were dissolved in ethyl acetate (30 ml). The mixture was refluxed at 70 °C for 3 h until the reaction was completed. Then 2-amino thiophenol (0.25 g, 2.04 mmol) and 10 N sodium hydroxide (0.75 g, 18.75 mmol) were added into the above solution. The mixture was refluxed at 78 °C for 3 h and the reaction was monitored by TLC(dichloromethane/meoh = 200:1 (v/v)). Upon completion, the mixture was washed with brine (30 ml × 3) and dichloromethane (50 ml × 3), dried with over anhydrous Na2SO4. The organic layer was removed in vacuo to yield pale yellow crude product. The crude product was purified with flash column chromatography to obtain the pure solid.
Compound 8 (1 g, 2.06 mmol) and chloroacetyl chloride (0.26 g, 2.27 mmol) were dissolved in acetonitrile (30 ml). 2–3 drops of triethylamine were dripped slowly into the above solution. The resulting reaction mixture was stirred at room temperature for 4 h until reaction was completed. A mixture of the reaction was washed with brine (30 ML) and ethyl acetate (50 ml) for three times, dried with over anhydrous Na2SO4.Then, the organic layer was removed in vacuo to yield pure product.
General procedure for the synthesis of compounds 10–30
Compound 9 (2 g, 3.56 mmol) was dissolved in acetonitrile (20 ml). Then added K2CO3 (1.48 g, 10.68 mmol) and derivatives which contain alkylamine or nitrogen heterocycles groups (3.92 mmol) to the solution and stirred for 12 h at 78 °C until reaction was completed. The mixture was washed with dichloromethane (30 ml) and water (50 ml) for 3 times. The organic phase was dried over anhydrous Na2SO4 and evaporated in vacuum. The crude production was purified by silica gel column chromatography (dichloromethane: methanol = 60:1 or ethyl acetate: petroleum ether =1.5:1).
The antimicrobial activity of the newly designed pleuromutilin derivatives against MRSA (ATCC 43300), S. aureus (ATCC 29213), S. aureus (AD3), and S. aureus (144) were evaluated using tiamulin, valnemulin, retapamulin, and vancomycin as positive controls. The MIC value was recorded as the lowest concentration of the sample that completely inhibited the visible growth of bacteria after incubating in the 96-well plate for 18–24 h at 37 °C. Stock solutions of these derivatives were prepared by 90% ultrapure-water, 5% dimethyl sulfoxide (DMSO) and 5% Tween 80 at the concentration of 320μg/mL. According to the broth micro dilution methods, a series of two-fold dilution were prepared in Mueller-Hinton broth medium (MHB), and the amount of inoculation in each well was 5 × 105 CFU/mL.Each concentration of these compounds and positive controls was conducted for three parallel experiments. After the MIC results were observed, the 96-well plate were kept in 37 °C in 5% CO2 atmosphere for 24 h, and the MBC was determined by inoculating the borehole bacterial solution from no obvious bacterial growth on Mueller-Hinton agar plate (MHA). The MBC was recorded as the lowest concentration of these tested compounds that was able to produce a 99.9% decrease in viable bacterial cells on the agar plates.
Constant concentration time-kill curves
To investigate the antibacterial effect of compound 10, compound 13, and compound 18 at different drug concentrations against MRSA (ATCC 43300) in vitro, the time-kill cure experiment was performed. MRSA (ATCC 43300) was collected in logarithmic period then diluted to 1 × 106 CFU/mL. Bacterial solutions were treated with compound 10, compound 13, compound 18, tiamulin, and retapamulin at concentrations of 2 × MIC, 4 × MIC, 8 × MIC, 16 × MIC, 32 × MIC, respectively. Mixtures were placed in 37 °C constant temperature shaking incubator. Samples(100 μL) were diluted in sterile saline and plated on MH agar plates at different time points(0, 3, 6, 9 and 24 h), respectively. These results were recorded after 18–24 h of incubation. Time-kill curves were established by plotting bacteria counts (log10 CFU/mL) versus time.
Determination of the post-antibiotic effect (PAE)
The post-antibiotic effect in vitro (PAE) of compound 10, compound 13, compound 18 and tiamulin against MRSA was performed by MH broth dilution method. A logarithmic-phase broth culture solution of MRSA was diluted in MH broth to a final count of approximately 1 × 106 CFU/mL. Bacterial solutions were treated with compounds 10, 13, 18, and tiamulin at final concentrations of 2 × MIC, 4 × MIC, 8 × MIC, 16 × MIC, 32 × MIC, respectively. Two groups of mixtures were incubated at a 37 °C constant temperature vibration incubator for 1 h and 2 h. After that, the drugs were removed from the mixtures by diluting 1000 times with the preheated MH broth. Two groups of samples were collected after the completion of dilution and were incubated under the condition of 37 °C constant temperature incubator, a 95% humidified atmosphere and 5% CO2. Samples (100 μL) were diluted in sterile saline and plated on MH agar plates at the following time points(0, 2, 4, 6, and 8 h), respectively. Finally, these plates were incubated for 24 h, the number of colonies were counted manually. The PAE was calculated using the following equation: PAE = T (where T is the time required for the increase of 1 log10 CFU/mL from the removal of the antimicrobial, and T represents the time required for bacterial cultures not treated with an antimicrobial to increase 1 log10 CFU/mL) and expressed in an hour.
In vivo efficacy of pleuromutilin derivatives
Neutropenic murine thigh infection model
Six-week-old, specific pathogen-free (SPF), female ICR/Swiss mice weighing 22–28 g were used for a thigh infection model experiment. Neutropenia was induced by cyclophosphamide administration at 4 day (150 mg/kg) and 1 day (100 mg/kg) prior to infection by intraperitoneal injection. A logarithmic-phase culture solution of MRSA was diluted in MH broth to a final count of approximately 1 × 107 CFU/mL. After dilution, the concentration of 107 CFU/mL (0.1 ml/thigh) were injected into each thigh of the mice to produce a thigh infection model caused by MRSA. 2 h after infection, the thigh infection model was established. After two hours, mice were randomly divided into 3 groups (3 per group) and injected intraperitoneally with normal saline (control group), compound 13 (20 mg/kg), and tiamulin (20 mg/kg) as a control group and two experimental groups. Mice that received intravenous injections were euthanized 24 h, thigh tissue was aseptically collected, placed into pre-weighed tubes (containing 1 ml of iced saline), weighed, and homogenised. Ten-fold serial dilutions of thigh tissue homogenates were plated onto MH agar plates and the number of colonies were counted manually. This experiment protocols were reviewed and approved by the Committee on the Ethics of Animals of South China Agricultural University (Approval number: 2021C061).To assessed the effects of tiamulin and the target compounds on the viability of RAW264.7 macrophages and human cell lines 16HBE (non-cancer cell line), the MTT assay was performed as described in references. RAW264.7 cells and 16HBE cells were seeded in a 96-well plate at a density of 1.0 × 105 cells per well.Cells were treated with the target compounds (5 μg/mL and 10 μg/mL) and were cultured at 37 °C in the atmosphere of 5% CO2 for 24 h. After incubation, 0.5 mg/mL MTT were add to per well for 4 h at 37 °C. After the MTT solution was discarded, the DMSO (150 μL) was added to each well to dissolve all crystals. The absorbance at 490 nm was recorded using a microplate spectrophotometer (BIO-TEK Instrument Inc, USA).
Molecular modeling
Docking studies revealed the binding modes of pleuromutilin derivatives analogs which based on the crystal structure of S. aureus 50S ribosomal in complex with tiamulin (PDB ID code: 1XBP). The peptidyl transferase centre (PTC), consisting primarily of all residues within 40 Å around the tiamulin in 1XBP. The binding site of tiamulin in 1XBP was set to the docking position. All compounds were prepared with Avogadro 1.1.1, with a 5000 steps Steepest Descent as well as 1000 steps Conjugate Gradients geometry optimisation using MMFF94 force field. Docking experiments were performed using LeDock Vina and PymolClick here for additional data file.
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