| Literature DB >> 35874050 |
Anna Maria Peri1, Michelle J Bauer1, Haakon Bergh2, Dominika Butkiewicz1, David L Paterson1,3, Patrick Na Harris1,2.
Abstract
Background: Conventional blood cultures methods are associated with long turnaround times, preventing early treatment optimization in bloodstream infections. The BioFire Blood Culture Identification 2 (BCID2) Panel is a new multiplex PCR applied on positive blood cultures, reducing time to pathogen identification and resistant markers detection.Entities:
Keywords: Blood culture; Bloodstream infection; Molecular diagnostic techniques; Sepsis
Year: 2022 PMID: 35874050 PMCID: PMC9304729 DOI: 10.1016/j.heliyon.2022.e09983
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
BioFire BCID2 panel; MRSA, methicillin-resistant Staphylococcus aureus.
| Gram positives | |
| Gram negatives | |
| Yeast | |
| Antimicrobial resistance markers |
Performance characteristics of the BCID2 compared to conventional culture shown for each target for monomicrobial samples.
| Microorganism | TP (n) [BC+/BCID2+] | FP (n) [BC-/BCID2+] | FN (n) [BC+/BCID2-] | TN (n) [BC-/BCID2-] | SE (%) | 95% CI (%) | SP (%) | 95% CI (%) |
|---|---|---|---|---|---|---|---|---|
| 12 | 0 | 0 | 48 | 100 | 73.5–100 | 100 | 92.6–100 | |
| 7 | 0 | 0 | 53 | 100 | 59–100 | 100 | 93.3–100 | |
| 3 | 0 | 0 | 57 | 100 | 29.2–100 | 100 | 93.7–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 9 | 0 | 0 | 51 | 100 | 66.4–100 | 100 | 93–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 4 | 0 | 0 | 56 | 100 | 39.8–100 | 100 | 93.6–100 | |
| 2 | 0 | 0 | 58 | 100 | 15.8–100 | 100 | 93.8–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 26 | 1 | 0 | 33 | 100 | 86.8–100 | 97.1 | 84.7–99.9 | |
| 23 | 0 | 0 | 37 | 100 | 85.2–100 | 100 | 90.5–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 1 | 0 | 0 | 59 | 100 | 2.5–100 | 100 | 93.9–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
| 0 | 0 | 0 | 60 | NA | - | 100 | 94.1–100 | |
TP = True Positives; FP = False Positives; FN = False Negatives; TN = True Negatives; BC = Blood Culture; BCID2 = Blood Culture Identification 2 Panel; SE = Sensitivity; SP = Specificity; CI = Confidence Interval.
Including 2 off-panel species (S. hominis and S. capitis).
Including 4 off-panel species (S. intermedius, S. constellatus, S. group C and S. group D).
This sample grew B. cereus according to traditional methods confirmed by whole genome sequencing.
Concordance between BCID2 and traditional methods for polymicrobial blood cultures.
| Polymicrobial blood cultures | Results according to conventional methods | Results according to BCID2 | Concordant results |
|---|---|---|---|
| 1 | 100% | ||
| 2 | 50% | ||
Whole genome sequencing confirmed Enterococcus spp.
Resistance markers detected by BCID2 and in-house PCR and correlation to bacterial phenotype.
| Phenotype according to VITEK 2 and conventional susceptibility testing | Identification of resistance markers according to BCID2 | Identification of resistance markers according to in-house PCR | Concordant results |
|---|---|---|---|
| Oxacillin resistance | 3/3 | ||
| 3rd generation cephalosporin resistance | 3/3 | ||
| 3rd generation cephalosporin resistance | None | NA | |
NA = Not applicable.
Cefoxitin screening well.
blaCMY was also detected by whole genome sequencing.