Literature DB >> 35873532

Catalytic mechanism and endo-to-exo selectivity reversion of an octalin-forming natural Diels-Alderase.

Michio Sato1, Shinji Kishimoto1, Mamoru Yokoyama1, Cooper S Jamieson2, Kazuto Narita1, Naoya Maeda1, Kodai Hara1, Hiroshi Hashimoto1, Yuta Tsunematsu1, Kendall N Houk2,3, Yi Tang2,3, Kenji Watanabe1.   

Abstract

We have previously reported the identification of CghA, a proposed Diels-Alderase responsible for the formation of the bicyclic octalin core of the fungal secondary metabolite Sch210972. Here we show the crystal structure of the CghA-product complex at a resolution of 2.0 Å. Our result provides the second structural determination of eukaryotic Diels-Alderases and adds yet another fold to the family of proteins reported to catalyse [4 + 2] cycloaddition reactions. Site-directed mutagenesis-coupled kinetic characterization and computational analyses allowed us to identify key catalytic residues and propose a possible catalytic mechanism. Most interestingly, we were able to rationally engineer CghA such that the mutant was able to catalyse preferentially the formation of the energetically disfavoured exo adduct. This work expands our knowledge and understanding of the emerging and potentially widespread class of natural enzymes capable of catalysing stereoselective Diels-Alder reactions and paves the way towards developing enzymes potentially useful in various bio/synthetic applications.

Entities:  

Year:  2021        PMID: 35873532      PMCID: PMC9302879          DOI: 10.1038/s41929-021-00577-2

Source DB:  PubMed          Journal:  Nat Catal


  34 in total

1.  Supramolecular binding thermodynamics by dispersion-corrected density functional theory.

Authors:  Stefan Grimme
Journal:  Chemistry       Date:  2012-07-10       Impact factor: 5.236

2.  Chemokine receptor CCR-5 inhibitors produced by Chaetomium globosum.

Authors:  Shu-Wei Yang; Ronald Mierzwa; Joseph Terracciano; Mahesh Patel; Vincent Gullo; Nicole Wagner; Bahige Baroudy; Mohindar Puar; Tze-Ming Chan; Andrew T McPhail; Min Chu
Journal:  J Nat Prod       Date:  2006-07       Impact factor: 4.050

Review 3.  Current developments and challenges in the search for a naturally selected Diels-Alderase.

Authors:  Hak Joong Kim; Mark W Ruszczycky; Hung-wen Liu
Journal:  Curr Opin Chem Biol       Date:  2012-01-17       Impact factor: 8.822

4.  Solanapyrone synthase, a possible Diels-Alderase and iterative type I polyketide synthase encoded in a biosynthetic gene cluster from Alternaria solani.

Authors:  Ken Kasahara; Takanori Miyamoto; Takashi Fujimoto; Hiroki Oguri; Tetsuo Tokiwano; Hideaki Oikawa; Yutaka Ebizuka; Isao Fujii
Journal:  Chembiochem       Date:  2010-06-14       Impact factor: 3.164

5.  The Catalytic Mechanism of a Natural Diels-Alderase Revealed in Molecular Detail.

Authors:  Matthew J Byrne; Nicholas R Lees; Li-Chen Han; Marc W van der Kamp; Adrian J Mulholland; James E M Stach; Christine L Willis; Paul R Race
Journal:  J Am Chem Soc       Date:  2016-05-06       Impact factor: 15.419

6.  Evidence for enzyme catalysed intramolecular [4+2] Diels-Alder cyclization during the biosynthesis of pyrichalasin H.

Authors:  Verena Hantke; Elizabeth J Skellam; Russell J Cox
Journal:  Chem Commun (Camb)       Date:  2020-03-05       Impact factor: 6.222

Review 7.  Recent advances of Diels-Alderases involved in natural product biosynthesis.

Authors:  Atsushi Minami; Hideaki Oikawa
Journal:  J Antibiot (Tokyo)       Date:  2016-06-15       Impact factor: 2.649

8.  Enzyme-Catalyzed Inverse-Electron Demand Diels-Alder Reaction in the Biosynthesis of Antifungal Ilicicolin H.

Authors:  Zhuan Zhang; Cooper S Jamieson; Yi-Lei Zhao; Dehai Li; Masao Ohashi; K N Houk; Yi Tang
Journal:  J Am Chem Soc       Date:  2019-03-26       Impact factor: 15.419

9.  An antibody exo Diels-Alderase inhibitor complex at 1.95 angstrom resolution.

Authors:  A Heine; E A Stura; J T Yli-Kauhaluoma; C Gao; Q Deng; B R Beno; K N Houk; K D Janda; I A Wilson
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

10.  A new enzyme involved in the control of the stereochemistry in the decalin formation during equisetin biosynthesis.

Authors:  Naoki Kato; Toshihiko Nogawa; Hiroshi Hirota; Jae-Hyuk Jang; Shunji Takahashi; Jong Seog Ahn; Hiroyuki Osada
Journal:  Biochem Biophys Res Commun       Date:  2015-03-11       Impact factor: 3.575

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  4 in total

1.  Engineered P450 Atom-Transfer Radical Cyclases are Bifunctional Biocatalysts: Reaction Mechanism and Origin of Enantioselectivity.

Authors:  Yue Fu; Heyu Chen; Wenzhen Fu; Marc Garcia-Borràs; Yang Yang; Peng Liu
Journal:  J Am Chem Soc       Date:  2022-07-13       Impact factor: 16.383

2.  Combining iminium and supramolecular catalysis for the [4 + 2] cycloaddition of E-cinnamaldehydes.

Authors:  Kendra K Shrestha; Michael A Hilyard; Indunil Alahakoon; Michael C Young
Journal:  Org Biomol Chem       Date:  2022-08-24       Impact factor: 3.890

Review 3.  Redesigning Enzymes for Biocatalysis: Exploiting Structural Understanding for Improved Selectivity.

Authors:  Yaoyu Ding; Gustavo Perez-Ortiz; Jessica Peate; Sarah M Barry
Journal:  Front Mol Biosci       Date:  2022-07-22

Review 4.  New Trends and Future Opportunities in the Enzymatic Formation of C-C, C-N, and C-O bonds.

Authors:  Jack J Sangster; James R Marshall; Nicholas J Turner; Juan Mangas-Sanchez
Journal:  Chembiochem       Date:  2021-11-24       Impact factor: 3.461

  4 in total

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