| Literature DB >> 35873276 |
Elsa Santos Febles1,2, Marlis Ontivero Ortega1,3, Michell Valdés Sosa1, Hichem Sahli2,4.
Abstract
Antecedent: The event-related potential (ERP) components P300 and mismatch negativity (MMN) have been linked to cognitive deficits in patients with schizophrenia. The diagnosis of schizophrenia could be improved by applying machine learning procedures to these objective neurophysiological biomarkers. Several studies have attempted to achieve this goal, but no study has examined Multiple Kernel Learning (MKL) classifiers. This algorithm finds optimally a combination of kernel functions, integrating them in a meaningful manner, and thus could improve diagnosis. Objective: This study aimed to examine the efficacy of the MKL classifier and the Boruta feature selection method for schizophrenia patients (SZ) and healthy controls (HC) single-subject classification.Entities:
Keywords: Boruta; event related potential; feature selection; machine learning; multiple kernel learning; schizophrenia
Year: 2022 PMID: 35873276 PMCID: PMC9305700 DOI: 10.3389/fninf.2022.893788
Source DB: PubMed Journal: Front Neuroinform ISSN: 1662-5196 Impact factor: 3.739
Demographic data (Laton et al., 2014).
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| Number of participants | 54 | 54 | |
| Male | 36 | 36 | |
| Age (years): mean ± std | 40.5 ± 10.1 | 37.6 ± 14.1 | 0.22 |
| Age (years): range | [22.4, 60.5] | [15.1, 64.4] | |
| Education (years): mean ± std | 12.6 ± 1.80 | 14.8 ± 2.11 | 4.84 ×10–5 |
| Disease duration (years): mean ± std | 14.8 ± 9.04 | – | |
| Disease duration (years): range | [1, 40] | – |
Paradigms and procedures (Laton et al., 2014).
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| Target | 1500 Hz 70 dB | Square, side 106 pixels | 10 |
| Distractor | 500 Hz 70 dB | Circle, diameter 176 pixels | 10 |
| Standard | 1000 Hz 70 dB | Square, side 158 pixels | 80 |
| Inter-stimulus interval was randomized between 1 and 1.5 s. 400 stimuli per test. 100 ms per stimuli. Total test time of 540 s. | |||
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| Duration deviant | 1000 Hz 70 dB | 250 ms | 5% |
| Frequency deviant | 1500 Hz 70 dB | 100 ms | 5% |
| Standard | 1000 Hz 70 dB | 100 ms | 90% |
| Inter-stimulus interval of 300 ms, 1800 tones per test. Total test time of 733 s. | |||
Figure 1Averaged evoked potential signals used for feature extraction.
Figure 2Principal components of P300 tasks (N100, P200, N200, P300) and MMN task (P200, P300).
Figure 3Grouping input data (726 features) in three possible kernel combinations according to the feature space approach.
Figure 4Feature selection steps applying nested cross-validation.
Figure 5Distribution of feature selection in 10 fold cross-validation. (A) Amount of attributes selected per k iteration of the 10 fold CV and the distribution per paradigm in the 10 subsets of features selected, (B) Frequency of selection of all the attributes that were selected at least once in the ten Boruta applications. The bottom number means how many features were selected at least in n CV iterations (n on top).
Features selected by the Boruta feature selection method.
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| P300v | Target | Pz | P2 | Latency |
| P300a | Distractor | Cz | N1 | absRatio |
| P300a | Distractor | Fz | P2 | absRatio |
| P300a | Distractor | Fz | P2 | absAmplitude |
| P300a | Target | Cz | N1 | absRatio |
| P300a | Target | Cz | N2 | Latency |
| P300a | Target | Cz | P2 | Latency |
Performance of MKL algorithm with and without feature selection.
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| Paradigm | 83 | 80 | 88 | 0.88 | 86 | 86 | 87 | 0.92 |
| Channels | 80 | 74 | 87 | 0.82 | 84 | 85 | 86 | 0.91 |
| Type of Features | 82 | 78 | 85 | 0.87 | 86 | 86 | 86 | 0.92 |