Literature DB >> 35865987

CHRNA5 rs16969968 and CHRNA3 rs578776 polymorphisms are associated with multiple nicotine dependence phenotypes in Bangladeshi smokers.

Nusrat Islam Chaity1, Mohd Nazmul Hasan Apu1.   

Abstract

Background: A recent study has identified the role of CHRNA5-A3-B4 gene cluster variants rs16969968 and rs578776 of nicotinic acetylcholine receptors (nAChRs) on smoking status in Bengali ethnicity. The aim of the current study was to investigate whether these rs16969968-rs578776-rs11072768 single nucleotide polymorphisms (SNPs) of CHRNA5-A3-B4 gene cluster were associated with nicotine dependence (ND) and related phenotypes.
Methods: The Fagerstrom Test for Nicotine Dependence (FTND) and Cigarette Dependence Scale (CDS-12) were used to assess the degree of ND, and genotyping was done using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method on a cohort of 129 male smokers participating in a structured questionnaire-based survey.
Results: Smokers with AA genotype of CHRNA5 rs16969968 SNP were at significantly increased risk of developing ND compared to its wild type variant with odds ratio (ORs) of 1.20 (FTND: 95% CI 0.25-5.37, p = 0.253) and 2.48 (CDS-12: 95% CI 0.46-13.26, p = 0.081), respectively. Conversely, smokers with AA genotype of CHRNA3 rs578776 variant had a strong protective effect against ND development (ORs = 0.27, 95% CI 0.09-0.80, p = 0.076). There was no such link reported in CHRNB4 rs11072768 variant carriers. Similarly, G-A/G-A diplotype of rs16969968_rs578776 variants was discovered to be a protective factor against ND. Moreover, demographic features such as age, occupation and dwelling status were found to be significantly associated with ND.
Conclusion: Taken together, CHRNA5-A3-B4 gene cluster variants rs16969968 and rs578776 as well as specific demographic characteristics regulate ND and related smoking phenotypes in Bangladeshi male smokers. Further studies with large sample sizes are required to substantially validate the significance.
© 2022 The Author(s).

Entities:  

Keywords:  Bangladeshi smokers; CHRNA5-A3-B4 gene cluster; Nicotine dependence; rs11072768; rs16969968; rs578776

Year:  2022        PMID: 35865987      PMCID: PMC9293740          DOI: 10.1016/j.heliyon.2022.e09947

Source DB:  PubMed          Journal:  Heliyon        ISSN: 2405-8440


Introduction

Smoking is one of the leading causes of premature death worldwide. Study conducted on more than 200,000 people has reported that about 67 percent of smokers perished from smoking-related illness and the relative risk for adverse health effects increases with intensity of smoking [1]. In 2015, global estimated death due to smoking was 6.4 million and it has been predicted that by 2030 it will be approximately 6.8 million which is appalling [2, 3]. Besides, in Bangladesh, the death rate due to smoking has been reported to be 19% by World Health Organization (WHO) [4]. Global Adult Tobacco Survey (GATS) conducted by WHO in Bangladesh has reported that approximately 35.3% adults are currently smoking among which 46% are men and 25.2% are women and among the non-smokers 39% adults are exposed to smoking [5]. Even though different smoking cessation treatments are available, many smokers failed to act upon their intentions to quit smoking and diversity in quitting occurs due to nicotine dependence (ND). The majority of dependents are not able to stop smoking, even with professional assistance [6] and in spite of the known health benefits. Various restorative factors [7, 8, 9] are contributing to relapse after cessation among which genetic factors play an important role and can be attributable to a 50% risk for failed attempts to quit smoking [4, 5]. Recently, Genome-wide association studies (GWAS) have highlighted some new genetic variants such as CHRNA5-A3-B4 gene cluster associated with nicotine dependence (ND), which can also be candidates for the prediction of the success of the treatment of this dependence [10]. ND is a complex behavioral condition that has a slow onset and develops due to prolonged smoking which can be characterized by tolerance, cravings, withdrawal symptoms during periods of abstinence, and loss of control over the amount despite the harmful consequences. Nicotine is the main chemical constituent and psychoactive ingredient of cigarettes responsible for ND development which gives a temporary pleasing effect in the brain after inhalation and absorption, and dissipation of its transient effect impulsivity to smoke arises again. It exerts its psychopharmacological activity by binding with functionally diverse neuronal nicotinic acetylcholine receptors (nAChRs), which exists as homo or hetero pentameric and ligand gated ion channel [11, 12, 13, 14]. Among its 12 different subtypes, α5, α3, β4 receptor subunits are often co-expressed and co-regulated on chromosome 15q25, and encoded by CHRNA5-A3-B4 gene cluster [10]. Polymorphism in this gene cluster alters the receptor composition as well as binding of nicotine to this receptor which leads to changes in functional and behavioral outcomes. Additionally, variation in this gene cluster has been found associated with ND and various smoking related phenotypes [12, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32] as well as lung cancer [33, 34, 35] which makes this a plausible candidate to develop better assessment methods and produce more personalized therapy for cessation. The most well-known hereditary influence related to ND is a missense mutation at rs16969968 (G>A) on the nAChRs CHRNA5, resulting in an amino acid alteration from aspartate to asparagine at the 398th position [36, 37, 38, 39]. CHRNA3 rs578776 (G>A) is a 3'-UTR variant and the minor allele genotype (AA) was found to be a protective factor against heaviness of smoking as well as ND [15, 27, 36, 38, 39, 40, 41, 42] and CHRNB4 rs11072768 (T>G) is an intron variant significantly associated with cigarette per day (CPD) in Chinese males and lung cancer indirectly through smoking behavior [12, 43, 44, 45]. In accordance with those previous studies and as association differs in different races and ethnic groups, our previous work established a strong association between this gene cluster variants and smoking status (SS) [21]. Therefore, the current study was aimed to further explore the hypothesis that occurrences of these three SNPs (rs16969968-rs578776-rs11072768) in CHRNA5-A3-B4 gene cluster control several ND traits in Bangladeshi male smokers.

Materials and methods

Study design and population

A total of 129 smokers defined by WHO [46] were enrolled from our previously published study [21] but was limited only to male population due to unavailability and privacy concerns of female smokers. A prior power analysis (β = 0.2) determined that the power of the analysis of variance (ANOVA) was ≥0.8 at a 95% confidence interval (CI), indicating that the sample size (n = 129) of the study was sufficient. Each participant signed a written consent form before being enrolled and completed self-reported measures for his smoking history and behavior. Study protocol was approved by the ethical committees and the study was conducted according to the declaration of Helsinki and its further amendments [47].

Phenotype analysis

Primary data was collected by a questionnaire-based survey method where Fagerstrom Test for Nicotine Dependence (FTND) and Cigarette Dependence Scale (CDS-12), two scales were used for the measurement of degree of ND. The FTND scale measures the degree of ND from 2 (low) to 8 (high), relates with the withdrawal symptoms, ability to stop smoking, physiological dependence and tolerance, heavily weighted for cigarettes per day (CPD) and time from waking until the first cigarette (TFC) but fails to differentiate very low dependent smokers [48, 49, 50]. Whereas, the 12-items CDS scale is brief, self-administered, slightly better predictor of withdrawal symptoms and self-efficacy after cessation, has test-retest ability and suited for both high and low dependent smokers ranging from 12 (lowest) to 60 (highest) but has no ‘gold standard’ for measuring ND. Since CDS-12 scale is briefer and more sensitive than FTND scale but has no ‘gold standard’ for ND both the scales were used in order to measure the ND more precisely. Here, we assessed ND with some smoking-related phenotypes-smoking initiation (SI), CPD, TFC in association with these two scores i.e., FTND, CDS-12. SI was assessed by comparing smokers of ≤16 years to smokers of >16 years of age as previous study reported no observable genetic effect in subjects who began daily nicotine use after the age of 16 [51]. CPD was used as a measurement of tobacco consumption where heavy smokers who smoked 20 or more cigarettes per day were compared with light smokers who smoked less than 20 cigarettes per day [52]. TFC was applied for measuring the craving phenotype and the ability to quit as well. ND was evaluated using FTND and CDS-12 scores. Participants were divided into two groups based on their scores: low dependence (<4 scores for FTND, ≤40 scores for CDS-12) and high dependence (≥4 scores for FTND, >40 scores for CDS-12).

Genotype analysis

Genomic DNA was extracted from all 129 smokers’ blood samples and genotyped for CHRNA5 rs16969968, CHRNA3 rs578776, CHRNB4 rs11072768 variants using Polymerase Chain Reaction -Restriction Fragment Length Polymorphism (PCR-RFLP) method [53]. Details of the genotype analysis can be found in our previously published study [21].

In-silico gene expression analysis

To explore the tissue specific expression of CHRNA5-A3-B4 gene cluster and its associated SNPs of interest, an in-silico gene expression analysis was performed using Genotype-Tissue Expression (GTEx) portal [54]. Furthermore, to correlate the expression of these three genes with two major histological subtypes of lung cancer i.e., lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) as well as with smoking status, UALCAN, an interactive web tool based on TCGA dataset [55], was used.

Statistical analysis

Chi-square test (χ2) was applied to measure the association of smokers’ demographic features with several smoking phenotypes. To perform multiple regression analyses for assessing odds ratios (ORs) and 95% confidence interval (CI), SPSS software package, version 17.0 (SPSS, Inc., Chicago, IL) was used and were adjusted to age, occupation and dwelling status. In all the analyses, p value less than 0.05 was considered as statistically significant. In addition, data, if required, were corrected for multiple comparisons using Bonferroni method in order to prevent false positive results.

Results

Association between demographic characteristics of smokers and smoking phenotypes

Age of the smokers was found to be a statistically significant factor in influencing many smoking-related phenotypes, such as age of SI, CPD, TFC, FTND and CDS-12, whereas occupation and dwelling status were important contributing factors primarily for phenotypes related to the intensity of nicotine dependence. Individual body weight and parental tobacco exposure didn’t seem to impact any ND traits. Detailed results of the correlation analysis between demographic characteristics and smoking phenotypes are shown in Table 1.
Table 1

Correlation between demographic characteristics of smokers and different smoking phenotypes.

CharacteristicsSI age
CPD
TFC
FTND
CDS
≤16 years>16 yearsp-value≤20>20p-value≤30>30p-value<4≥4p-value<40≥40p-value
Age (years)
<254270.024∗3100.022∗6250.0005∗2290.029∗2290.027∗
25–5015385614373231393337
>5088157167913814
Weight (kg)
<606240.51634110.25624210.60327180.32718270.098
60–801844619323844263931
>803571357162
Occupation
Student11420.3775310.0001∗16380.0004∗34200.026∗34200.038∗
Service39163811118118
Business510155138713614
Others812181222710201218
Dwelling status
Urban15460.4975730.0005∗22380.014∗40200.0004∗39210.003∗
Rural12274518372622412439
PTE
Yes15370.6655390.44730320.92532300.78731310.785
No12364912293230313229

PTE, Parental Tobacco Exposure; SI, Smoking initiation; CPD, Cigarette per day; TFC, Time from waking until the First Cigarette; FTND, Fagerstrom Test for Nicotine Dependence; CDS-12, Cigarette Dependence Scale -12 (∗) marks the values which are statistically significant where p < 0.05 indicates statistical significance.

Correlation between demographic characteristics of smokers and different smoking phenotypes. PTE, Parental Tobacco Exposure; SI, Smoking initiation; CPD, Cigarette per day; TFC, Time from waking until the First Cigarette; FTND, Fagerstrom Test for Nicotine Dependence; CDS-12, Cigarette Dependence Scale -12 (∗) marks the values which are statistically significant where p < 0.05 indicates statistical significance.

Correlation of CHRNA5-A3-B4 gene cluster with smoking phenotypes

To examine the influence of these investigated SNPs on the age of daily smoking initiation, we reported a significant association of rs578776 AA genotype with late onset of smoking (OR = 3.49, 95% CI = 0.96–10.54, p = 0.016). However, no such link was discovered for the other two SNPs (Table 2).
Table 2

Association of CHRNA5-A3-B4 gene cluster SNPs with different smoking phenotypes.

CharacteristicsSI age
CPD
TFC
FTND
CDS
≤16 years>16 yearsAdjusted OR (95%CI)p-value≤20>20Adjusted OR (95%CI)p-value≤30>30Adjusted OR (95%CI)p-value<4≥4Adjusted OR (95% CI)p-value<40≥40Adjusted OR (95% CI)p-value
rs16969968 G>A
GG2150Ref7316Ref4544ref4346Ref4643ref
GA5180.65 (0.21–1.99)0.1532251.03 (0.33–3.08)0.3011160.59 (0.27–1.53)0.12116110.62 (0.27–1.42)0.10415120.81 (0.35–1.95)0.237
AA150.45 (0.05–4.30)0.168700.29 (0.02–5.13)0.132340.69 (0.16–3.34)0.228341.20 (0.25–5.37)0.253252.48 (0.46–13.26)0.081
rs578776 G>A
GG629Ref375Ref2022ref1725Ref1923ref
GA12321.76 (0.57–5.13)0.09643132.16 (0.74–6.64)0.0530251.25 (0.54–2.77)0.15927290.70 (0.33–1.58)0.14728280.74 (0.34–1.76)0.201
AA8113.49 (0.96–10.54)0.016∗1831.18 (0.26–5.44)0.239130.75 (0.27–1.96)0.1981560.27 (0.09–0.80)0.076∗1380.48 (0.17–1.40)0.08
rs11072768 T>G
TT1129Ref4211Ref2628ref2924Ref2825ref
TG13281.20 (0.47–3.10)0.2234160.57 (0.18–1.69)0.09223231.09 (0.48–2.40)0.28024231.19 (0.50–2.41)0.22125220.94 (0.44–2.20)0.301
GG2140.38 (0.07–1.91)0.0811640.92 (0.27–3.31)0.329110.85 (0.32–2.43)0.2758121.78 (0.63–4.96)0.099111.33 (0.45–3.9)0.192

PTE, Parental Tobacco Exposure; SI, Smoking initiation; CPD, Cigarette per day; TFC, Time from waking until the First Cigarette; FTND, Fagerstrom Test for Nicotine; Dependence; CDS-12, Cigarette Dependence Scale -12 (∗) marks the values which are statistically significant after correcting for multiple testing.

Association of CHRNA5-A3-B4 gene cluster SNPs with different smoking phenotypes. PTE, Parental Tobacco Exposure; SI, Smoking initiation; CPD, Cigarette per day; TFC, Time from waking until the First Cigarette; FTND, Fagerstrom Test for Nicotine; Dependence; CDS-12, Cigarette Dependence Scale -12 (∗) marks the values which are statistically significant after correcting for multiple testing. Furthermore, the CPD value was used to assess the intensity of nicotine consumption, and our study found no significant connection between the three SNPs studied and the amount of tobacco consumed (Table 2). FTND, CDS scores, and TFC phenotype were recorded afterwards to study the influence of these selected polymorphisms on the degree of ND in smokers. According to the FTND and CDS-12 scores, rs16969968 AA genotype contributed to the development of ND. Conversely, given its high linkage disequilibrium (D′ = 1.0) and low correlation (r2 = 0.2478) with rs16969968 in Bengali ethnicity (Supplementary Figure 1), the rs578776 AA genotype showed a protective function against ND. In addition, the TFC phenotype was found to be unrelated to the SNPs studied (Table 2). Figure 1 shows the FTND and CDS-12 scores distribution among smokers of different CHRNA5-A3-B4 genotypes.
Figure 1

Distribution of nicotine dependence test scores among smokers of different CHRNA5-A3-B4 genotypes A) FTND score, B) CDS-12 score.

Distribution of nicotine dependence test scores among smokers of different CHRNA5-A3-B4 genotypes A) FTND score, B) CDS-12 score. To further dig into the collective role of rs16969968 and rs578776 SNPs, different diplotypes, matched pair of haplotypes on homologous chromosomes [56], of these two polymorphisms having at least <5.0% frequency were correlated with their FTND scores. The diplotype analysis revealed that individuals having two low-risk G alleles for rs16969968 along with two low-risk A alleles for rs578776 were associated with significantly reduced risk of ND (OR = 0.2167, 95% CI = 0.05–0.95, p = 0.043) (Figure 2).
Figure 2

Association of different rs16969968_rs578776 diplotypes with FTND scores. ∗p < 0.05.

Association of different rs16969968_rs578776 diplotypes with FTND scores. ∗p < 0.05.

Correlation between CHRNA5-A3-B4 gene expression and lung cancer risk

Our in-silico mRNA expression analysis of these three genes in different regions of brain and lungs revealed that the median expression of both CHRNA5 and CHRNA3 genes is highest in the cerebellum region, whereas basal ganglia express the highest level of CHRNB4 gene. Compared to the cerebellum, CHRNA5 and CHRNB4 genes are relatively lowly expressed in lung tissues, approximately by 3-fold and 4-fold, respectively and the expression of CHRNA3 was found negligible (only 1.2% relative to cerebellum) (Supplementary Figure 2 and Supplementary Table 1). To correlate these expression data with lung cancer risk, expression between normal and lung cancer was obtained from the UALCAN database. CHRNA5 gene was found to be significantly upregulated in lung cancer patients irrespective of their cancer subtypes, ethnicities and smoking habits (Figure 3), suggesting a link between high CHRNA5 expression and lung cancer risk. In contrast to CHRNA5 overexpression in lung primary tumors, expression of CHRNA3 gene showed no significant difference between normal and lung cancer patients except for Caucasian ethnicity and LUSC subtypes (Figure 4), which could possibly be justified by the low expression level of this gene in lungs compared to major brain regions. In case of CHRNB4 gene expression, a trend similar to CHRNA5 expression was observed. However, it is important to highlight the fact that CHRNB4 expression exhibits insignificant results for Asian lung cancer patients (Figure 5). More importantly, despite the existence of some sort of relationship between normal and lung cancer patients’ gene expression for CHRNA5-A3-B4 gene cluster in terms of their smoking habits, none of these genes showed any significant difference when a comparison was made between smoker and non-smoker lung cancer patients.
Figure 3

Expression analysis of CHRNA5 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05.

Figure 4

Expression analysis of CHRNA3 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05.

Figure 5

Expression analysis of CHRNB4 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05.

Expression analysis of CHRNA5 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05. Expression analysis of CHRNA3 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05. Expression analysis of CHRNB4 gene using UALCAN A) expression in LUAD, B) expression in LUSC, C) expression in LUAD based on patient’s ethnicity, D) expression in LUSC based on patient’s ethnicity, E) expression in LUAD based on patient’s smoking habit, F) expression in LUSC based on patient’s smoking habit. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗∗p < 0.0001, p > 0.05. Our analysis of CHRNA5 rs16969968 polymorphism also reported a significantly low expression for AA genotype compared to GG genotype (p = 5.00 × 10-09) in lung tissue (Supplementary Figure 3). No lung tissue specific data was found for CHRNA3 rs578776 and CHRNB4 rs11072768 polymorphisms in the GTEx portal.

Discussion

Numerous lines of evidence including ours have indicated a compelling link between CHRNA5-A3-B4 gene cluster variants (rs16969968-rs578776-rs11072768) and SS in Bangladeshi male smokers. In the present study, which primarily focused on the transition from regular smoking to addiction, we performed analyses to explore their relationship with ND by utilizing two independent ND measurement scales (FTND and CDS-12) covering a broad spectrum of smoking related phenotypes including smoking initiation age, smoking quantity and craving as well as dependence. Individuals carrying AA genotype of CHRNA5 rs16969968 variant had 1.20 (FTND) and 2.48 (CDS-12) higher odds of developing ND, if compared with noncarriers, replicating several previously reported studies [18, 26, 26]. However, our findings failed to reach sufficient statistical significance considerably owing to the small study population or probably a true finding in reference to few previous similar reports [57, 58, 59]. Association of rs16969968 AA genotype with ND was well documented by in vitro functional studies [18, 60]. A change from aspartic acid (D398) to asparagine (N398) in rs16969968 variant initiates a series of event including the reduction of receptor’s function, concomitant prolongation of receptor desensitization and reduction of calcium ions permeability [60, 61], which ultimately generates an increased demand for nicotine in particular brain areas leading to development of ND [27, 36, 62]. In addition, conservation of D398 amino acid across divergent species [18] and a drastic reduction of sensitivity to nicotine induced behaviors and seizures in CHRNA5 mutant mouse model [63] might also reason the high ND in CHRNA5 rs16969968 AA genotype carriers. The CHRNA3 rs578776 variant AA genotype was found to be protective against ND and late-onset smoking which corroborates several previous studies [18, 64]. A study conducted on the brain reward system reported that rs578776 protective A-allele carriers show normal intrinsic reward sensitivity to intrinsically pleasant activity in smokers whereas G-allele carriers demonstrate increased sensitivity to nicotine induced stimulation [65]. Moreover, Hong and colleagues identified rs578776 at-risk G-allele mediated overactivation of a specific brain circuit in dorsal anterior cingulate cortex and left anterior thalamus regions using fMRI technology [66], which might be sensitive to nicotine exposure suggesting a plausible link between rs578776 at-risk G-allele and ND. Being an intron variant, CHRNB4 rs11072768 polymorphism has been found to be associated with smoking cessation, CPD [12, 43] as well as lung cancer [45]. Molecular study performed on B4 subunit null mice reported an increased tolerance development after chronically treated with nicotine [67], which might lead to neuroadaptation and subsequently to ND. Surprisingly, our analysis could not identify any association of rs11072768 with any of the investigated smoking-related phenotypes. Analysis of different diplotypes of rs16969968_rs578776 also detected that smoker with common allele homozygous for rs16969968 and minor allele homozygous for rs578776 demonstrated an overall protection against ND, showing an independent role of each SNP. This finding was also potentially backed by the low correlation (r2 = 0.2478) value reported in BEB ethnicity (current study) and differences between rs578776 related dorsal anterior cingulate cortex (dACC)-thalamus circuit and rs16969968 related dACC-ventral striatum circuit [66]. ND features may also be modified by many social environment factors, according to social cognitive theory [68]. Age, occupation, and residence status were all found to be strongly correlated with ND-related traits in this study. On the other hand, parental smoking exposure had no effect on future ND development, which is in direct opposition to the social cognitive paradigm [68]. This discrepancy could possibly be due to other confounding factors which might be ruled out by large scale population study. Our study also investigated the mRNA expression pattern of CHRNA5-A3-B4 gene cluster in normal and lung cancer patients using an in-silico approach. We reported overexpression of CHRNA5 and CHRNB4 in lung cancer patients compared to normal volunteers which is consistent with several previously published results [33, 34, 45, 69]. However, CHRNB4 expression was found to be nonsignificant in case of Asian ethnicity which in a way corroborates our findings regarding rs11072768 and ND. No such association was found for CHRNA3 gene. In case of smoker lung cancer patients, expression of all three genes was significantly higher than that of normal individuals. Interestingly, there was no significant difference in expression of CHRNA5-A3-B4 gene region revealed between non-smokers (n = 18) and smokers (n = 133) lung cancer patients, hence, requiring a large-scale investigation. SNP specific expression analysis using GTEx portal showed low expression of rs16969968 AA genotype in normal lung tissues and no data was found for other two SNPs. Altogether, based on the findings of our preliminary in-silico analysis, a comprehensive study comprising a substantial number of lung cancer patients with varying smoking status is required to establish any link among CHRNA5-A3-B4 gene cluster, ND and lung cancer risk. In conclusion, our findings showed that rs16969968 and rs578776 SNPs of CHRNA5-A3-B4 gene cluster on chromosome 15q25 and certain demographic features influence ND in Bangladeshi male smokers, though our study was limited by small sample size and lack of any biochemical biomarker e.g. serum/urine cotinine (COT), trans-3'-hydroxy cotinine (3HC) levels measurement. This study replicating the gene to phenotype association with those self-reported phenotypes and genetic measurements allowed a further step towards understanding the relationship between the variants and ND in the Bangladeshi population. Further study with a large sample size should be performed to substantially validate these findings.

Declarations

Author contribution statement

Nusrat Islam Chaity: Performed the experiments; Analyzed and interpreted the data; Wrote the paper. Mohd Nazmul Hasan Apu: Conceived and designed the experiments; Analyzed and interpreted the data; Wrote the paper.

Funding statement

This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.

Data availability statement

Data included in article/supp. material/referenced in article.

Declaration of interests statement

The authors declare no competing interests.

Additional information

No additional information is available for this paper.
  64 in total

1.  The Fagerström test for nicotine dependence in two adult population samples-potential influence of lifetime amount of tobacco smoked on the degree of dependence.

Authors:  Ulrich John; Christian Meyer; Ulfert Hapke; Hans-Jürgen Rumpf; Anja Schumann; Christiane Adam; Dietrich Alte; Jan Lüdemann
Journal:  Drug Alcohol Depend       Date:  2003-07-20       Impact factor: 4.492

2.  Social influence, intention to smoke, and adolescent smoking behaviour longitudinal relations.

Authors:  Paulo D Vitória; M Fátima Salgueiro; Silvia A Silva; Hein de Vries
Journal:  Br J Health Psychol       Date:  2011-01-13

3.  The CHRNA5/A3/B4 gene cluster variability as an important determinant of early alcohol and tobacco initiation in young adults.

Authors:  Isabel R Schlaepfer; Nicole R Hoft; Allan C Collins; Robin P Corley; John K Hewitt; Christian J Hopfer; Jeffrey M Lessem; Matthew B McQueen; Soo Hyun Rhee; Marissa A Ehringer
Journal:  Biol Psychiatry       Date:  2007-12-27       Impact factor: 13.382

4.  Analysis of detailed phenotype profiles reveals CHRNA5-CHRNA3-CHRNB4 gene cluster association with several nicotine dependence traits.

Authors:  Ulla Broms; Juho Wedenoja; Marine R Largeau; Tellervo Korhonen; Janne Pitkäniemi; Kaisu Keskitalo-Vuokko; Anja Häppölä; Katri H Heikkilä; Kauko Heikkilä; Samuli Ripatti; Antti-Pekka Sarin; Outi Salminen; Tiina Paunio; Michele L Pergadia; Pamela A F Madden; Jaakko Kaprio; Anu Loukola
Journal:  Nicotine Tob Res       Date:  2012-01-12       Impact factor: 4.244

5.  Cholinergic nicotinic receptor genes implicated in a nicotine dependence association study targeting 348 candidate genes with 3713 SNPs.

Authors:  Scott F Saccone; Anthony L Hinrichs; Nancy L Saccone; Gary A Chase; Karel Konvicka; Pamela A F Madden; Naomi Breslau; Eric O Johnson; Dorothy Hatsukami; Ovide Pomerleau; Gary E Swan; Alison M Goate; Joni Rutter; Sarah Bertelsen; Louis Fox; Douglas Fugman; Nicholas G Martin; Grant W Montgomery; Jen C Wang; Dennis G Ballinger; John P Rice; Laura Jean Bierut
Journal:  Hum Mol Genet       Date:  2006-11-29       Impact factor: 6.150

6.  Genetic variability of smoking persistence in African Americans.

Authors:  Ajna Hamidovic; John L Kasberger; Taylor R Young; Robert J Goodloe; Susan Redline; Sarah G Buxbaum; Neal L Benowitz; Andrew W Bergen; Kenneth R Butler; Nora Franceschini; Sina A Gharib; Brian Hitsman; Daniel Levy; Yan Meng; George J Papanicolaou; Sarah R Preis; Bonnie Spring; Mindi A Styn; Elisa K Tong; Wendy B White; Kerri L Wiggins; Eric Jorgenson
Journal:  Cancer Prev Res (Phila)       Date:  2011-03-24

7.  Multiple independent loci at chromosome 15q25.1 affect smoking quantity: a meta-analysis and comparison with lung cancer and COPD.

Authors:  Nancy L Saccone; Robert C Culverhouse; Tae-Hwi Schwantes-An; Dale S Cannon; Xiangning Chen; Sven Cichon; Ina Giegling; Shizhong Han; Younghun Han; Kaisu Keskitalo-Vuokko; Xiangyang Kong; Maria Teresa Landi; Jennie Z Ma; Susan E Short; Sarah H Stephens; Victoria L Stevens; Lingwei Sun; Yufei Wang; Angela S Wenzlaff; Steven H Aggen; Naomi Breslau; Peter Broderick; Nilanjan Chatterjee; Jingchun Chen; Andrew C Heath; Markku Heliövaara; Nicole R Hoft; David J Hunter; Majken K Jensen; Nicholas G Martin; Grant W Montgomery; Tianhua Niu; Thomas J Payne; Leena Peltonen; Michele L Pergadia; John P Rice; Richard Sherva; Margaret R Spitz; Juzhong Sun; Jen C Wang; Robert B Weiss; William Wheeler; Stephanie H Witt; Bao-Zhu Yang; Neil E Caporaso; Marissa A Ehringer; Tim Eisen; Susan M Gapstur; Joel Gelernter; Richard Houlston; Jaakko Kaprio; Kenneth S Kendler; Peter Kraft; Mark F Leppert; Ming D Li; Pamela A F Madden; Markus M Nöthen; Sreekumar Pillai; Marcella Rietschel; Dan Rujescu; Ann Schwartz; Christopher I Amos; Laura J Bierut
Journal:  PLoS Genet       Date:  2010-08-05       Impact factor: 5.917

8.  Variants in nicotinic acetylcholine receptors alpha5 and alpha3 increase risks to nicotine dependence.

Authors:  Xiangning Chen; Jingchun Chen; Vernell S Williamson; Seon-Sook An; John M Hettema; Steven H Aggen; Michael C Neale; Kenneth S Kendler
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2009-10-05       Impact factor: 3.568

9.  CHRNA5-A3-B4 genetic variants alter nicotine intake and interact with tobacco use to influence body weight in Alaska Native tobacco users.

Authors:  Andy Z X Zhu; Caroline C Renner; Dorothy K Hatsukami; Neal L Benowitz; Rachel F Tyndale
Journal:  Addiction       Date:  2013-07-05       Impact factor: 6.526

10.  Smoker's characteristics, general health and their perception of smoking in the social environment: a study of smokers in Rajshahi City, Bangladesh.

Authors:  Md Kamruzzaman; Ahammad Hossain; Enamul Kabir
Journal:  Z Gesundh Wiss       Date:  2021-01-06
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.