Literature DB >> 35852690

Evaluation of Advantages of Lithium Chloride as a Precipitating Agent in RNA Isolation from Frozen Vein Segments.

V A Korolenya1,2, K A Gavrilov1,2, K S Sevost'ianova1,2, A I Shevela1,2, M L Filipenko1,2, M A Smetanina3,4.   

Abstract

Contamination of the sample with DNA is a problem when isolating RNA by phenol-chloroform extraction, and DNase treatment introduces an additional error in the analysis of gene expression. Bearing in mind the ability of LiCl to precipitate RNA selectively, we studied the possibility and advantage of using LiCl as a precipitation agent in the protocol for RNA precipitation [3] from frozen segments of large vessels. Combined use of LiCl with isopropanol as precipitating agents (optimal ratio 2.5 M and 40%, respectively) significantly eliminates negative effects of using this salt (inhibition of reverse transcription and low RNA yield).
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  RNA isolation; isopropanol; lithium chloride; precipitation selectivity; reverse transcription

Mesh:

Substances:

Year:  2022        PMID: 35852690     DOI: 10.1007/s10517-022-05554-8

Source DB:  PubMed          Journal:  Bull Exp Biol Med        ISSN: 0007-4888            Impact factor:   0.737


  8 in total

1.  DNA methylation and gene expression profiling reveal MFAP5 as a regulatory driver of extracellular matrix remodeling in varicose vein disease.

Authors:  Mariya A Smetanina; Alexander E Kel; Ksenia S Sevost'ianova; Igor V Maiborodin; Andrey I Shevela; Igor A Zolotukhin; Philip Stegmaier; Maxim L Filipenko
Journal:  Epigenomics       Date:  2018-08-02       Impact factor: 4.778

2.  The size distributions of proteins, mRNA, and nuclear RNA.

Authors:  S S Sommer; J E Cohen
Journal:  J Mol Evol       Date:  1980-03       Impact factor: 2.395

3.  A method for the purification of E. coli plasmid DNA by homogeneous lysis and polyethylene glycol precipitation.

Authors:  D Pulleyblank; M Michalak; S L Daisley; R Glick
Journal:  Mol Biol Rep       Date:  1983-08       Impact factor: 2.316

4.  The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on.

Authors:  Piotr Chomczynski; Nicoletta Sacchi
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  An optimized method for extraction and detection of Coconut cadang-cadang viroid(CCCVd) from oil palm.

Authors:  M R Mohammadi; G Vadamalai; H Joseph
Journal:  Commun Agric Appl Biol Sci       Date:  2010

6.  An optimized preparation method to obtain high-quality RNA from dry sunflower seeds.

Authors:  X B Ma; J Yang
Journal:  Genet Mol Res       Date:  2011-02-01

7.  RNA Purity, Real-Time PCR Sensitivity, and Colon Segment Influence mRNA Relative Expression in Murine Dextran Sodium Sulfate Experimental Colitis.

Authors:  Bernardo Oldak; Mayra Cruz-Rivera; Ana Flisser; Fela Mendlovic
Journal:  J Biomol Tech       Date:  2018-07-13

8.  Construction of prokaryotic strand-specific primary-transcripts saturated RNASeq library by controlled heat magnesium-dependent mRNA degradation.

Authors:  Kirill S Mironov; Maria Shumskaya; Dmitry A Los
Journal:  Biochimie       Date:  2020-08-14       Impact factor: 4.079

  8 in total

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