Literature DB >> 17406285

The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on.

Piotr Chomczynski1, Nicoletta Sacchi.   

Abstract

Since its introduction, the 'single-step' method has become widely used for isolating total RNA from biological samples of different sources. The principle at the basis of the method is that RNA is separated from DNA after extraction with an acidic solution containing guanidinium thiocyanate, sodium acetate, phenol and chloroform, followed by centrifugation. Under acidic conditions, total RNA remains in the upper aqueous phase, while most of DNA and proteins remain either in the interphase or in the lower organic phase. Total RNA is then recovered by precipitation with isopropanol and can be used for several applications. The original protocol, enabling the isolation of RNA from cells and tissues in less than 4 hours, greatly advanced the analysis of gene expression in plant and animal models as well as in pathological samples, as demonstrated by the overwhelming number of citations the paper gained over 20 years.

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Year:  2006        PMID: 17406285     DOI: 10.1038/nprot.2006.83

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  518 in total

1.  Reference genes for qPCR assays in toxic metal and salinity stress in two flatworm model organisms.

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Journal:  Ecotoxicology       Date:  2011-11-12       Impact factor: 2.823

2.  Assessment of lipopolysaccharide microleakage at conical implant-abutment connections.

Authors:  Sönke Harder; Elgar Susanne Quabius; Lars Ossenkop; Matthias Kern
Journal:  Clin Oral Investig       Date:  2011-12-02       Impact factor: 3.573

3.  Isolation of high quality RNA from Phyllanthus emblica and its evaluation by downstream applications.

Authors:  Avneesh Kumar; Kashmir Singh
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

4.  Analysis of aminoacyl- and peptidyl-tRNAs by gel electrophoresis.

Authors:  Brian D Janssen; Elie J Diner; Christopher S Hayes
Journal:  Methods Mol Biol       Date:  2012

5.  A novel shell-structure cell microcarrier (SSCM) for cell transplantation and bone regeneration medicine.

Authors:  Kai Su; Yihong Gong; Chunming Wang; Dong-An Wang
Journal:  Pharm Res       Date:  2010-11-19       Impact factor: 4.200

6.  Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific.

Authors:  Kazuo Suzuki; Takaomi Ishida; Makoto Yamagishi; Chantelle Ahlenstiel; Sanjay Swaminathan; Katharine Marks; Daniel Murray; Erin M McCartney; Michael R Beard; Marina Alexander; Damian F J Purcell; David A Cooper; Toshiki Watanabe; Anthony D Kelleher
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

7.  Specific Binding of snoRNAs to PARP-1 Promotes NAD+-Dependent Catalytic Activation.

Authors:  Dan Huang; Dae-Seok Kim; W Lee Kraus
Journal:  Biochemistry       Date:  2020-04-17       Impact factor: 3.162

8.  Elevated expression of E-cadherin in primary breast cancer and its corresponding metastatic lymph node.

Authors:  Lin Chen; Wei Jian; Leisheng Lu; Lijun Zheng; Zhen Yu; Donglei Zhou
Journal:  Int J Clin Exp Med       Date:  2015-07-15

9.  Purification of DNA/RNA in a microfluidic device.

Authors:  Andy Fan; Samantha Byrnes; Catherine Klapperich
Journal:  Methods Mol Biol       Date:  2013

10.  Thylakoid lumen carbonic anhydrase (CAH3) mutation suppresses air-Dier phenotype of LCIB mutant in Chlamydomonas reinhardtii.

Authors:  Deqiang Duanmu; Yingjun Wang; Martin H Spalding
Journal:  Plant Physiol       Date:  2008-12-12       Impact factor: 8.340

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